data_74X
#

_chem_comp.id                                   74X
_chem_comp.name                                 
;1-[4-chloranyl-3-(trifluoromethyl)phenyl]-3-[[(2R,3S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxol
an-2-yl]methyl]thiourea
;

_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H18 Cl F3 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(THIO)UREA-ALPHA-DEOXYTHYMIDINE DERIVATIVE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-10-24
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       478.873
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    74X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2YOG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
74X  OAC   OAC   O   0  1  N  N  N  12.479   3.475  29.972   6.932  -1.430   1.120  OAC   74X   1  
74X  CAZ   CAZ   C   0  1  N  N  N  13.661   3.753  29.885   6.592  -0.303   0.817  CAZ   74X   2  
74X  NAR   NAR   N   0  1  N  N  N  14.408   3.289  28.823   7.521   0.667   0.721  NAR   74X   3  
74X  CAY   CAY   C   0  1  N  N  N  15.739   3.593  28.726   7.161   1.922   0.387  CAY   74X   4  
74X  OAB   OAB   O   0  1  N  N  N  16.375   3.146  27.763   8.001   2.800   0.300  OAB   74X   5  
74X  CAU   CAU   C   0  1  N  N  N  16.329   4.424  29.721   5.798   2.211   0.138  CAU   74X   6  
74X  CAA   CAA   C   0  1  N  N  N  17.783   4.823  29.667   5.369   3.606  -0.237  CAA   74X   7  
74X  CAM   CAM   C   0  1  N  N  N  15.589   4.867  30.783   4.887   1.220   0.242  CAM   74X   8  
74X  NBD   NBD   N   0  1  N  N  N  14.241   4.530  30.868   5.294  -0.042   0.579  NBD   74X   9  
74X  CBC   CBC   C   0  1  N  N  S  13.400   4.963  32.000   4.306  -1.119   0.686  CBC   74X  10  
74X  OAS   OAS   O   0  1  N  N  N  14.244   5.231  33.141   3.005  -0.619   0.357  OAS   74X  11  
74X  CAO   CAO   C   0  1  N  N  N  12.483   6.128  31.712   4.643  -2.241  -0.320  CAO   74X  12  
74X  CBA   CBA   C   0  1  N  N  S  13.290   7.238  32.335   3.237  -2.661  -0.828  CBA   74X  13  
74X  OAD   OAD   O   0  1  N  N  N  14.283   7.683  31.384   3.305  -3.183  -2.157  OAD   74X  14  
74X  CBB   CBB   C   0  1  N  N  R  13.959   6.567  33.561   2.496  -1.300  -0.801  CBB   74X  15  
74X  CAN   CAN   C   0  1  N  N  N  13.083   6.554  34.872   0.988  -1.520  -0.668  CAN   74X  16  
74X  NAP   NAP   N   0  1  N  N  N  13.112   7.953  35.308   0.302  -0.226  -0.695  NAP   74X  17  
74X  CAT   CAT   C   0  1  N  N  N  12.157   8.841  35.000  -1.041  -0.172  -0.592  CAT   74X  18  
74X  SAE   SAE   S   0  1  N  N  N  10.622   8.374  34.339  -1.945  -1.617  -0.429  SAE   74X  19  
74X  NAQ   NAQ   N   0  1  N  N  N  12.367  10.104  35.369  -1.672   1.018  -0.618  NAQ   74X  20  
74X  CAV   CAV   C   0  1  Y  N  N  11.547  11.117  35.083  -3.071   1.069  -0.600  CAV   74X  21  
74X  CAL   CAL   C   0  1  Y  N  N  12.001  11.999  34.103  -3.785   0.277   0.290  CAL   74X  22  
74X  CAJ   CAJ   C   0  1  Y  N  N  10.326  11.351  35.706  -3.747   1.916  -1.469  CAJ   74X  23  
74X  CAK   CAK   C   0  1  Y  N  N   9.571  12.469  35.319  -5.127   1.965  -1.449  CAK   74X  24  
74X  CAW   CAW   C   0  1  Y  N  N  10.044  13.340  34.331  -5.836   1.171  -0.565  CAW   74X  25  
74X  CLA   CLA   CL  0  0  N  N  N   9.077  14.714  33.926  -7.571   1.235  -0.542  CLA   74X  26  
74X  CAX   CAX   C   0  1  Y  N  N  11.270  13.115  33.700  -5.165   0.330   0.305  CAX   74X  27  
74X  CBE   CBE   C   0  1  N  N  N  11.828  14.075  32.607  -5.940  -0.529   1.271  CBE   74X  28  
74X  FAG   FAG   F   0  1  N  N  N  10.983  14.264  31.619  -5.050  -1.286   2.039  FAG   74X  29  
74X  FAH   FAH   F   0  1  N  N  N  12.014  15.268  33.115  -6.704   0.287   2.111  FAH   74X  30  
74X  FAF   FAF   F   0  1  N  N  N  12.977  13.627  32.113  -6.785  -1.385   0.557  FAF   74X  31  
74X  HAR   HAR   H   0  1  N  N  N  13.974   2.727  28.119   8.454   0.461   0.893  HAR   74X  32  
74X  HAA1  HAA1  H   0  0  N  N  N  18.021   5.462  30.530   6.242   4.259  -0.269  HAA1  74X  33  
74X  HAA2  HAA2  H   0  0  N  N  N  18.412   3.921  29.695   4.893   3.589  -1.217  HAA2  74X  34  
74X  HAA3  HAA3  H   0  0  N  N  N  17.977   5.377  28.737   4.662   3.981   0.503  HAA3  74X  35  
74X  HAM   HAM   H   0  1  N  N  N  16.047   5.474  31.550   3.842   1.421   0.056  HAM   74X  36  
74X  HBC   HBC   H   0  1  N  N  N  12.753   4.113  32.263   4.304  -1.518   1.700  HBC   74X  37  
74X  HAO1  HAO1  H   0  0  N  N  N  12.340   6.281  30.632   5.253  -1.858  -1.138  HAO1  74X  38  
74X  HAO2  HAO2  H   0  0  N  N  N  11.504   6.010  32.198   5.140  -3.073   0.179  HAO2  74X  39  
74X  HBB   HBB   H   0  1  N  N  N  14.895   7.101  33.781   2.718  -0.730  -1.703  HBB   74X  40  
74X  HBA   HBA   H   0  1  N  N  N  12.638   8.062  32.660   2.772  -3.376  -0.150  HBA   74X  41  
74X  HAD   HAD   H   0  1  N  N  N  14.798   8.383  31.767   3.850  -3.977  -2.240  HAD   74X  42  
74X  HAN1  HAN1  H   0  0  N  N  N  12.054   6.229  34.656   0.636  -2.135  -1.495  HAN1  74X  43  
74X  HAN2  HAN2  H   0  0  N  N  N  13.523   5.894  35.634   0.776  -2.023   0.276  HAN2  74X  44  
74X  HAP   HAP   H   0  1  N  N  N  13.884   8.261  35.864   0.814   0.593  -0.788  HAP   74X  45  
74X  HAQ   HAQ   H   0  1  N  N  N  13.193  10.306  35.895  -1.157   1.840  -0.649  HAQ   74X  46  
74X  HAL   HAL   H   0  1  N  N  N  12.957  11.810  33.638  -3.261  -0.379   0.969  HAL   74X  47  
74X  HAJ   HAJ   H   0  1  N  N  N   9.965  10.684  36.475  -3.194   2.536  -2.159  HAJ   74X  48  
74X  HAK   HAK   H   0  1  N  N  N   8.617  12.659  35.788  -5.653   2.623  -2.124  HAK   74X  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
74X  OAC  CAZ   DOUB  N  N   1  
74X  CAZ  NAR   SING  N  N   2  
74X  CAZ  NBD   SING  N  N   3  
74X  NAR  CAY   SING  N  N   4  
74X  CAY  OAB   DOUB  N  N   5  
74X  CAY  CAU   SING  N  N   6  
74X  CAU  CAA   SING  N  N   7  
74X  CAU  CAM   DOUB  N  N   8  
74X  CAM  NBD   SING  N  N   9  
74X  NBD  CBC   SING  N  N  10  
74X  CBC  OAS   SING  N  N  11  
74X  CBC  CAO   SING  N  N  12  
74X  OAS  CBB   SING  N  N  13  
74X  CAO  CBA   SING  N  N  14  
74X  CBA  OAD   SING  N  N  15  
74X  CBA  CBB   SING  N  N  16  
74X  CBB  CAN   SING  N  N  17  
74X  CAN  NAP   SING  N  N  18  
74X  NAP  CAT   SING  N  N  19  
74X  CAT  SAE   DOUB  N  N  20  
74X  CAT  NAQ   SING  N  N  21  
74X  NAQ  CAV   SING  N  N  22  
74X  CAV  CAL   SING  Y  N  23  
74X  CAV  CAJ   DOUB  Y  N  24  
74X  CAL  CAX   DOUB  Y  N  25  
74X  CAJ  CAK   SING  Y  N  26  
74X  CAK  CAW   DOUB  Y  N  27  
74X  CAW  CLA   SING  N  N  28  
74X  CAW  CAX   SING  Y  N  29  
74X  CAX  CBE   SING  N  N  30  
74X  CBE  FAG   SING  N  N  31  
74X  CBE  FAH   SING  N  N  32  
74X  CBE  FAF   SING  N  N  33  
74X  NAR  HAR   SING  N  N  34  
74X  CAA  HAA1  SING  N  N  35  
74X  CAA  HAA2  SING  N  N  36  
74X  CAA  HAA3  SING  N  N  37  
74X  CAM  HAM   SING  N  N  38  
74X  CBC  HBC   SING  N  N  39  
74X  CAO  HAO1  SING  N  N  40  
74X  CAO  HAO2  SING  N  N  41  
74X  CBB  HBB   SING  N  N  42  
74X  CBA  HBA   SING  N  N  43  
74X  OAD  HAD   SING  N  N  44  
74X  CAN  HAN1  SING  N  N  45  
74X  CAN  HAN2  SING  N  N  46  
74X  NAP  HAP   SING  N  N  47  
74X  NAQ  HAQ   SING  N  N  48  
74X  CAL  HAL   SING  N  N  49  
74X  CAJ  HAJ   SING  N  N  50  
74X  CAK  HAK   SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
74X  SMILES            ACDLabs               12.01  "FC(F)(F)c1cc(ccc1Cl)NC(=S)NCC3OC(N2C(=O)NC(=O)C(=C2)C)CC3O"  
74X  InChI             InChI                 1.03   "InChI=1S/C18H18ClF3N4O4S/c1-8-7-26(17(29)25-15(8)28)14-5-12(27)13(30-14)6-23-16(31)24-9-2-3-11(19)10(4-9)18(20,21)22/h2-4,7,12-14,27H,5-6H2,1H3,(H2,23,24,31)(H,25,28,29)/t12-,13+,14-/m0/s1"  
74X  InChIKey          InChI                 1.03   IJDGQXGQAWBJEG-MJBXVCDLSA-N  
74X  SMILES_CANONICAL  CACTVS                3.385  "CC1=CN([C@@H]2C[C@H](O)[C@@H](CNC(=S)Nc3ccc(Cl)c(c3)C(F)(F)F)O2)C(=O)NC1=O"  
74X  SMILES            CACTVS                3.385  "CC1=CN([CH]2C[CH](O)[CH](CNC(=S)Nc3ccc(Cl)c(c3)C(F)(F)F)O2)C(=O)NC1=O"  
74X  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CC1=CN(C(=O)NC1=O)[C@@H]2C[C@@H]([C@H](O2)CNC(=S)Nc3ccc(c(c3)C(F)(F)F)Cl)O"  
74X  SMILES            "OpenEye OEToolkits"  1.9.2  "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CNC(=S)Nc3ccc(c(c3)C(F)(F)F)Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
74X  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-({[4-chloro-3-(trifluoromethyl)phenyl]carbamothioyl}amino)-2',5'-dideoxy-3,4-dihydrothymidine"  
74X  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "1-[4-chloranyl-3-(trifluoromethyl)phenyl]-3-[[(2R,3S,5S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl]thiourea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
74X  "Create component"   2012-10-24  EBI   
74X  "Initial release"    2013-07-24  RCSB  
74X  "Modify descriptor"  2014-09-05  RCSB  
74X  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     74X
_pdbx_chem_comp_synonyms.name        "(THIO)UREA-ALPHA-DEOXYTHYMIDINE DERIVATIVE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
