data_69X
#

_chem_comp.id                                   69X
_chem_comp.name                                 "5'-O-[(S)-{[(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]oxy}(hydroxy)phosphoryl]adenosine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H23 N6 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-02
_chem_comp.pdbx_modified_date                   2022-06-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       510.394
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    69X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ROR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
69X  C02  C1   C  0  1  N  N  S   6.957  -2.401  51.923   4.993  -0.802  -0.038  C02  69X   1  
69X  C03  C2   C  0  1  N  N  N   7.096  -0.872  51.651   4.860   0.585  -0.670  C03  69X   2  
69X  C04  C3   C  0  1  Y  N  N   7.768  -0.554  50.378   5.937   1.489  -0.128  C04  69X   3  
69X  C05  C4   C  0  1  Y  N  N   9.132  -0.899  50.131   7.160   1.568  -0.769  C05  69X   4  
69X  C06  C5   C  0  1  Y  N  N   9.755  -0.628  48.901   8.148   2.396  -0.274  C06  69X   5  
69X  C07  C6   C  0  1  Y  N  N   9.044   0.004  47.843   7.913   3.149   0.868  C07  69X   6  
69X  C09  C7   C  0  1  Y  N  N   7.662   0.383  48.076   6.686   3.069   1.509  C09  69X   7  
69X  C10  C8   C  0  1  Y  N  N   7.081   0.076  49.296   5.699   2.243   1.006  C10  69X   8  
69X  C11  C9   C  0  1  N  N  N   6.402  -2.551  53.336   3.845  -1.670  -0.486  C11  69X   9  
69X  C18  C10  C  0  1  N  N  N   9.565  -1.547  56.049  -1.161  -2.740  -0.029  C18  69X  10  
69X  C19  C11  C  0  1  N  N  R  10.964  -2.151  56.061  -2.263  -2.154   0.855  C19  69X  11  
69X  C21  C12  C  0  1  N  N  R  11.469  -4.028  57.383  -3.861  -0.484   0.712  C21  69X  12  
69X  C22  C13  C  0  1  N  N  R  10.784  -4.559  56.108  -4.555  -1.743   0.132  C22  69X  13  
69X  C24  C14  C  0  1  N  N  S  11.085  -3.448  55.115  -3.597  -2.875   0.578  C24  69X  14  
69X  C27  C15  C  0  1  Y  N  N   9.609  -4.662  59.034  -3.600   1.217  -1.133  C27  69X  15  
69X  C29  C16  C  0  1  Y  N  N  10.792  -5.958  60.422  -5.289   2.528  -0.770  C29  69X  16  
69X  C30  C17  C  0  1  Y  N  N  11.316  -6.833  61.431  -6.291   3.513  -0.744  C30  69X  17  
69X  C33  C18  C  0  1  Y  N  N  13.464  -6.664  60.344  -7.206   2.483   1.108  C33  69X  18  
69X  C35  C19  C  0  1  Y  N  N  11.674  -5.499  59.427  -5.319   1.524   0.212  C35  69X  19  
69X  N01  N1   N  0  1  N  N  N   6.081  -3.094  50.933   6.262  -1.412  -0.458  N01  69X  20  
69X  N26  N2   N  0  1  Y  N  N  10.956  -4.688  58.519  -4.245   0.711  -0.045  N26  69X  21  
69X  N28  N3   N  0  1  Y  N  N   9.505  -5.426  60.159  -4.212   2.286  -1.555  N28  69X  22  
69X  N31  N4   N  0  1  N  N  N  10.574  -7.364  62.458  -6.313   4.526  -1.686  N31  69X  23  
69X  N32  N5   N  0  1  Y  N  N  12.679  -7.172  61.352  -7.218   3.447   0.206  N32  69X  24  
69X  N34  N6   N  0  1  Y  N  N  13.063  -5.830  59.354  -6.287   1.541   1.123  N34  69X  25  
69X  O08  O1   O  0  1  N  N  N   9.642   0.293  46.658   8.887   3.960   1.360  O08  69X  26  
69X  O12  O2   O  0  1  N  N  N   5.272  -2.623  53.647   4.005  -2.471  -1.376  O12  69X  27  
69X  O13  O3   O  0  1  N  N  N   7.350  -2.530  54.259   2.645  -1.553   0.104  O13  69X  28  
69X  O15  O4   O  0  1  N  N  N   6.277  -3.326  56.502   1.845  -4.048  -0.110  O15  69X  29  
69X  O16  O5   O  0  1  N  N  N   6.798  -0.756  56.050   1.316  -2.340  -1.892  O16  69X  30  
69X  O17  O6   O  0  1  N  N  N   8.671  -2.470  56.519   0.090  -2.135   0.305  O17  69X  31  
69X  O20  O7   O  0  1  N  N  N  11.214  -2.663  57.401  -2.455  -0.764   0.541  O20  69X  32  
69X  O23  O8   O  0  1  N  N  N  11.314  -5.864  55.709  -5.853  -1.918   0.703  O23  69X  33  
69X  O25  O9   O  0  1  N  N  N  12.397  -3.458  54.600  -4.083  -3.502   1.767  O25  69X  34  
69X  P14  P1   P  0  1  N  N  N   7.035  -2.209  55.923   1.471  -2.515  -0.430  P14  69X  35  
69X  H1   H1   H  0  1  N  N  N   7.961  -2.849  51.890   4.977  -0.709   1.048  H1   69X  36  
69X  H2   H2   H  0  1  N  N  N   7.677  -0.425  52.471   4.966   0.503  -1.752  H2   69X  37  
69X  H3   H3   H  0  1  N  N  N   6.089  -0.430  51.632   3.882   1.001  -0.431  H3   69X  38  
69X  H4   H4   H  0  1  N  N  N   9.701  -1.382  50.912   7.342   0.981  -1.657  H4   69X  39  
69X  H5   H5   H  0  1  N  N  N  10.789  -0.904  48.757   9.103   2.457  -0.774  H5   69X  40  
69X  H6   H6   H  0  1  N  N  N   7.097   0.895  47.312   6.501   3.654   2.397  H6   69X  41  
69X  H7   H7   H  0  1  N  N  N   6.041   0.330  49.438   4.743   2.180   1.505  H7   69X  42  
69X  H8   H8   H  0  1  N  N  N   9.544  -0.655  56.692  -1.099  -3.816   0.132  H8   69X  43  
69X  H9   H9   H  0  1  N  N  N   9.295  -1.264  55.021  -1.392  -2.543  -1.076  H9   69X  44  
69X  H10  H10  H  0  1  N  N  N  11.714  -1.404  55.762  -1.992  -2.262   1.906  H10  69X  45  
69X  H11  H11  H  0  1  N  N  N  12.550  -4.214  57.296  -4.102  -0.362   1.768  H11  69X  46  
69X  H12  H12  H  0  1  N  N  N   9.699  -4.621  56.276  -4.613  -1.689  -0.955  H12  69X  47  
69X  H13  H13  H  0  1  N  N  N  10.319  -3.406  54.326  -3.476  -3.608  -0.219  H13  69X  48  
69X  H14  H14  H  0  1  N  N  N   8.793  -4.112  58.589  -2.710   0.797  -1.577  H14  69X  49  
69X  H15  H15  H  0  1  N  N  N  14.503  -6.959  60.341  -7.979   2.468   1.863  H15  69X  50  
69X  H16  H16  H  0  1  N  N  N   6.029  -4.067  51.157   6.301  -1.509  -1.462  H16  69X  51  
69X  H17  H17  H  0  1  N  N  N   5.164  -2.696  50.963   7.049  -0.883  -0.115  H17  69X  52  
69X  H19  H19  H  0  1  N  N  N  11.157  -7.946  63.025  -5.630   4.563  -2.375  H19  69X  53  
69X  H20  H20  H  0  1  N  N  N  10.199  -6.623  63.016  -7.010   5.200  -1.658  H20  69X  54  
69X  H21  H21  H  0  1  N  N  N  10.538  -0.021  46.670   9.471   3.530   1.999  H21  69X  55  
69X  H22  H22  H  0  1  N  N  N   5.552  -2.986  57.013   1.962  -4.236   0.831  H22  69X  56  
69X  H23  H23  H  0  1  N  N  N  11.093  -6.511  56.368  -6.327  -2.694   0.371  H23  69X  57  
69X  H24  H24  H  0  1  N  N  N  12.510  -4.212  54.034  -4.920  -3.971   1.650  H24  69X  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
69X  O08  C07  SING  N  N   1  
69X  C07  C09  DOUB  Y  N   2  
69X  C07  C06  SING  Y  N   3  
69X  C09  C10  SING  Y  N   4  
69X  C06  C05  DOUB  Y  N   5  
69X  C10  C04  DOUB  Y  N   6  
69X  C05  C04  SING  Y  N   7  
69X  C04  C03  SING  N  N   8  
69X  N01  C02  SING  N  N   9  
69X  C03  C02  SING  N  N  10  
69X  C02  C11  SING  N  N  11  
69X  C11  O12  DOUB  N  N  12  
69X  C11  O13  SING  N  N  13  
69X  O13  P14  SING  N  N  14  
69X  O25  C24  SING  N  N  15  
69X  C24  C19  SING  N  N  16  
69X  C24  C22  SING  N  N  17  
69X  O23  C22  SING  N  N  18  
69X  P14  O16  DOUB  N  N  19  
69X  P14  O15  SING  N  N  20  
69X  P14  O17  SING  N  N  21  
69X  C18  C19  SING  N  N  22  
69X  C18  O17  SING  N  N  23  
69X  C19  O20  SING  N  N  24  
69X  C22  C21  SING  N  N  25  
69X  C21  O20  SING  N  N  26  
69X  C21  N26  SING  N  N  27  
69X  N26  C27  SING  Y  N  28  
69X  N26  C35  SING  Y  N  29  
69X  C27  N28  DOUB  Y  N  30  
69X  N34  C35  DOUB  Y  N  31  
69X  N34  C33  SING  Y  N  32  
69X  C35  C29  SING  Y  N  33  
69X  N28  C29  SING  Y  N  34  
69X  C33  N32  DOUB  Y  N  35  
69X  C29  C30  DOUB  Y  N  36  
69X  N32  C30  SING  Y  N  37  
69X  C30  N31  SING  N  N  38  
69X  C02  H1   SING  N  N  39  
69X  C03  H2   SING  N  N  40  
69X  C03  H3   SING  N  N  41  
69X  C05  H4   SING  N  N  42  
69X  C06  H5   SING  N  N  43  
69X  C09  H6   SING  N  N  44  
69X  C10  H7   SING  N  N  45  
69X  C18  H8   SING  N  N  46  
69X  C18  H9   SING  N  N  47  
69X  C19  H10  SING  N  N  48  
69X  C21  H11  SING  N  N  49  
69X  C22  H12  SING  N  N  50  
69X  C24  H13  SING  N  N  51  
69X  C27  H14  SING  N  N  52  
69X  C33  H15  SING  N  N  53  
69X  N01  H16  SING  N  N  54  
69X  N01  H17  SING  N  N  55  
69X  N31  H19  SING  N  N  56  
69X  N31  H20  SING  N  N  57  
69X  O08  H21  SING  N  N  58  
69X  O15  H22  SING  N  N  59  
69X  O23  H23  SING  N  N  60  
69X  O25  H24  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
69X  SMILES            ACDLabs               12.01  "Oc1ccc(cc1)CC(N)C(=O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"  
69X  InChI             InChI                 1.03   "InChI=1S/C19H23N6O9P/c20-11(5-9-1-3-10(26)4-2-9)19(29)34-35(30,31)32-6-12-14(27)15(28)18(33-12)25-8-24-13-16(21)22-7-23-17(13)25/h1-4,7-8,11-12,14-15,18,26-28H,5-6,20H2,(H,30,31)(H2,21,22,23)/t11-,12+,14+,15+,18+/m0/s1"  
69X  InChIKey          InChI                 1.03   NFCVQVDMLQEZAK-URQYDQELSA-N  
69X  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](Cc1ccc(O)cc1)C(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34"  
69X  SMILES            CACTVS                3.385  "N[CH](Cc1ccc(O)cc1)C(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34"  
69X  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C[C@@H](C(=O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N)O"  
69X  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1CC(C(=O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
69X  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-[(S)-{[(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]oxy}(hydroxy)phosphoryl]adenosine"  
69X  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{S})-2-azanyl-3-(4-hydroxyphenyl)propanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
69X  "Create component"  2021-08-02  RCSB  
69X  "Initial release"   2022-06-08  RCSB  
##
