data_5NX
# 
_chem_comp.id                                    5NX 
_chem_comp.name                                  "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(3-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-4-oxidanyl-cyclobut-3-ene-1,2-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H20 Cl N6 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-10-28 
_chem_comp.pdbx_modified_date                    2016-09-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.873 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5NX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EHC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5NX C4  C1  C  0 1 Y N N 4.433  -10.054 -3.930 1.822  -1.911 -0.044 C4  5NX 1  
5NX C5  C2  C  0 1 Y N N 4.046  -10.816 -4.976 2.631  -0.997 0.639  C5  5NX 2  
5NX C6  C3  C  0 1 N N N 2.753  -11.120 -5.144 4.021  -1.249 0.718  C6  5NX 3  
5NX C8  C4  C  0 1 Y N N 6.191  -10.578 -5.042 0.596  -0.258 0.745  C8  5NX 4  
5NX N1  N1  N  0 1 N N N 1.781  -10.663 -4.227 4.504  -2.365 0.129  N1  5NX 5  
5NX N2  N2  N  0 1 N N N 1.326  -9.359  -2.298 4.185  -4.344 -1.112 N2  5NX 6  
5NX N3  N3  N  0 1 N N N 3.516  -9.579  -3.056 2.373  -2.995 -0.604 N3  5NX 7  
5NX CAL C5  C  0 1 Y N N 5.516  -13.987 -5.526 4.057  2.290  0.544  CAL 5NX 8  
5NX CAU C6  C  0 1 Y N N 5.525  -15.375 -5.419 4.486  3.281  -0.321 CAU 5NX 9  
5NX CL  CL1 CL 0 0 N N N 5.828  -16.114 -3.890 6.151  3.346  -0.809 CL  5NX 10 
5NX CAJ C7  C  0 1 Y N N 5.290  -16.170 -6.537 3.588  4.219  -0.797 CAJ 5NX 11 
5NX CAI C8  C  0 1 Y N N 5.044  -15.589 -7.777 2.263  4.166  -0.408 CAI 5NX 12 
5NX CAK C9  C  0 1 Y N N 5.037  -14.201 -7.875 1.835  3.176  0.456  CAK 5NX 13 
5NX CAV C10 C  0 1 Y N N 5.271  -13.399 -6.760 2.731  2.235  0.928  CAV 5NX 14 
5NX CAO C11 C  0 1 N N N 5.251  -11.994 -6.924 2.263  1.155  1.870  CAO 5NX 15 
5NX N7  N4  N  1 1 Y N N 5.149  -11.158 -5.654 1.823  -0.010 1.098  N7  5NX 16 
5NX O6  O1  O  0 1 N N N 2.397  -11.819 -6.091 4.763  -0.479 1.303  O6  5NX 17 
5NX C2  C12 C  0 1 N N N 2.197  -9.820  -3.191 3.665  -3.218 -0.523 C2  5NX 18 
5NX N9  N5  N  0 1 Y N N 5.767  -9.866  -3.992 0.545  -1.427 0.041  N9  5NX 19 
5NX CBG C13 C  0 1 N N R 6.643  -9.161  -3.013 -0.656 -2.044 -0.526 CBG 5NX 20 
5NX OAS O2  O  0 1 N N N 8.048  -9.108  -3.381 -1.719 -1.074 -0.645 OAS 5NX 21 
5NX CBE C14 C  0 1 N N R 6.714  -10.026 -1.765 -1.238 -3.101 0.446  CBE 5NX 22 
5NX OAG O3  O  0 1 N N N 7.158  -9.236  -0.655 -0.614 -4.372 0.252  OAG 5NX 23 
5NX CBD C15 C  0 1 N N S 7.788  -11.042 -2.135 -2.727 -3.147 0.023  CBD 5NX 24 
5NX OAF O4  O  0 1 N N N 8.284  -11.675 -0.950 -2.962 -4.245 -0.861 OAF 5NX 25 
5NX CBF C16 C  0 1 N N R 8.850  -10.130 -2.711 -2.953 -1.809 -0.708 CBF 5NX 26 
5NX CAN C17 C  0 1 N N N 9.856  -10.873 -3.655 -4.064 -1.019 -0.014 CAN 5NX 27 
5NX NAQ N6  N  0 1 N N N 9.772  -10.344 -5.032 -4.343 0.203  -0.773 NAQ 5NX 28 
5NX CAX C18 C  0 1 N N N 10.713 -10.462 -5.967 -5.308 1.074  -0.340 CAX 5NX 29 
5NX CBA C19 C  0 1 N N N 11.307 -9.570  -6.852 -6.238 1.118  0.802  CBA 5NX 30 
5NX OAD O5  O  0 1 N N N 11.172 -8.373  -7.102 -6.467 0.395  1.753  OAD 5NX 31 
5NX CAZ C20 C  0 1 N N N 12.113 -10.589 -7.338 -6.776 2.410  0.310  CAZ 5NX 32 
5NX OAC O6  O  0 1 N N N 12.984 -10.671 -8.202 -7.626 3.206  0.664  OAC 5NX 33 
5NX CAW C21 C  0 1 N N N 11.522 -11.483 -6.450 -5.816 2.295  -0.795 CAW 5NX 34 
5NX OAE O7  O  0 1 N N N 11.672 -12.806 -6.173 -5.532 3.077  -1.859 OAE 5NX 35 
5NX H1  H1  H  0 1 N N N 7.222  -10.672 -5.351 -0.256 0.363  0.979  H1  5NX 36 
5NX H2  H2  H  0 1 N N N 0.823  -10.934 -4.316 5.454  -2.559 0.170  H2  5NX 37 
5NX H3  H3  H  0 1 N N N 1.647  -8.827  -1.515 5.137  -4.522 -1.061 H3  5NX 38 
5NX H4  H4  H  0 1 N N N 0.350  -9.545  -2.410 3.601  -4.960 -1.580 H4  5NX 39 
5NX H5  H5  H  0 1 N N N 5.698  -13.373 -4.657 4.758  1.556  0.916  H5  5NX 40 
5NX H6  H6  H  0 1 N N N 5.299  -17.246 -6.441 3.922  4.993  -1.472 H6  5NX 41 
5NX H7  H7  H  0 1 N N N 4.862  -16.203 -8.646 1.561  4.899  -0.779 H7  5NX 42 
5NX H8  H8  H  0 1 N N N 4.847  -13.737 -8.832 0.799  3.135  0.761  H8  5NX 43 
5NX H9  H9  H  0 1 N N N 6.179  -11.705 -7.439 3.083  0.866  2.527  H9  5NX 44 
5NX H10 H10 H  0 1 N N N 4.387  -11.745 -7.557 1.433  1.529  2.468  H10 5NX 45 
5NX H11 H11 H  0 1 N N N 6.247  -8.163  -2.773 -0.434 -2.494 -1.494 H11 5NX 46 
5NX H12 H12 H  0 1 N N N 5.751  -10.521 -1.570 -1.138 -2.774 1.481  H12 5NX 47 
5NX H13 H13 H  0 1 N N N 7.201  -9.779  0.123  -0.945 -5.066 0.838  H13 5NX 48 
5NX H14 H14 H  0 1 N N N 7.422  -11.760 -2.883 -3.371 -3.219 0.899  H14 5NX 49 
5NX H15 H15 H  0 1 N N N 7.615  -12.246 -0.592 -2.778 -5.110 -0.471 H15 5NX 50 
5NX H16 H16 H  0 1 N N N 9.419  -9.675  -1.887 -3.221 -1.995 -1.748 H16 5NX 51 
5NX H17 H17 H  0 1 N N N 9.615  -11.946 -3.666 -4.967 -1.629 0.036  H17 5NX 52 
5NX H18 H18 H  0 1 N N N 10.879 -10.731 -3.276 -3.748 -0.756 0.995  H18 5NX 53 
5NX H19 H19 H  0 1 N N N 9.625  -9.360  -4.928 -3.843 0.395  -1.583 H19 5NX 54 
5NX H20 H20 H  0 1 N N N 11.070 -13.056 -5.482 -6.068 3.880  -1.912 H20 5NX 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5NX OAC CAZ DOUB N N 1  
5NX CAK CAI DOUB Y N 2  
5NX CAK CAV SING Y N 3  
5NX CAI CAJ SING Y N 4  
5NX CAZ CBA SING N N 5  
5NX CAZ CAW SING N N 6  
5NX OAD CBA DOUB N N 7  
5NX CAO CAV SING N N 8  
5NX CAO N7  SING N N 9  
5NX CBA CAX SING N N 10 
5NX CAV CAL DOUB Y N 11 
5NX CAJ CAU DOUB Y N 12 
5NX CAW OAE SING N N 13 
5NX CAW CAX DOUB N N 14 
5NX O6  C6  DOUB N N 15 
5NX CAX NAQ SING N N 16 
5NX N7  C8  DOUB Y N 17 
5NX N7  C5  SING Y N 18 
5NX CAL CAU SING Y N 19 
5NX CAU CL  SING N N 20 
5NX C6  C5  SING N N 21 
5NX C6  N1  SING N N 22 
5NX C8  N9  SING Y N 23 
5NX NAQ CAN SING N N 24 
5NX C5  C4  DOUB Y N 25 
5NX N1  C2  SING N N 26 
5NX N9  C4  SING Y N 27 
5NX N9  CBG SING N N 28 
5NX C4  N3  SING N N 29 
5NX CAN CBF SING N N 30 
5NX OAS CBG SING N N 31 
5NX OAS CBF SING N N 32 
5NX C2  N3  DOUB N N 33 
5NX C2  N2  SING N N 34 
5NX CBG CBE SING N N 35 
5NX CBF CBD SING N N 36 
5NX CBD CBE SING N N 37 
5NX CBD OAF SING N N 38 
5NX CBE OAG SING N N 39 
5NX C8  H1  SING N N 40 
5NX N1  H2  SING N N 41 
5NX N2  H3  SING N N 42 
5NX N2  H4  SING N N 43 
5NX CAL H5  SING N N 44 
5NX CAJ H6  SING N N 45 
5NX CAI H7  SING N N 46 
5NX CAK H8  SING N N 47 
5NX CAO H9  SING N N 48 
5NX CAO H10 SING N N 49 
5NX CBG H11 SING N N 50 
5NX CBE H12 SING N N 51 
5NX OAG H13 SING N N 52 
5NX CBD H14 SING N N 53 
5NX OAF H15 SING N N 54 
5NX CBF H16 SING N N 55 
5NX CAN H17 SING N N 56 
5NX CAN H18 SING N N 57 
5NX NAQ H19 SING N N 58 
5NX OAE H20 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5NX InChI            InChI                1.03  
"InChI=1S/C21H19ClN6O7/c22-9-3-1-2-8(4-9)6-27-7-28(18-12(27)19(34)26-21(23)25-18)20-17(33)13(29)10(35-20)5-24-11-14(30)16(32)15(11)31/h1-4,7,10,13,17,20,29,33H,5-6H2,(H4-,23,24,25,26,30,31,32,34)/p+1/t10-,13-,17-,20-/m1/s1" 
5NX InChIKey         InChI                1.03  IHSJKXMUPLBBMG-PRXMSPFESA-O 
5NX SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(c[n+](Cc3cccc(Cl)c3)c2C(=O)N1)[C@@H]4O[C@H](CNC5=C(O)C(=O)C5=O)[C@@H](O)[C@H]4O" 
5NX SMILES           CACTVS               3.385 "NC1=Nc2n(c[n+](Cc3cccc(Cl)c3)c2C(=O)N1)[CH]4O[CH](CNC5=C(O)C(=O)C5=O)[CH](O)[CH]4O" 
5NX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cc(cc(c1)Cl)C[n+]2cn(c3c2C(=O)NC(=N3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)CNC5=C(C(=O)C5=O)O)O)O" 
5NX SMILES           "OpenEye OEToolkits" 2.0.4 "c1cc(cc(c1)Cl)C[n+]2cn(c3c2C(=O)NC(=N3)N)C4C(C(C(O4)CNC5=C(C(=O)C5=O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5NX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(3-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-4-oxidanyl-cyclobut-3-ene-1,2-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5NX "Create component" 2015-10-28 EBI  
5NX "Initial release"  2016-09-07 RCSB 
# 
