data_Z6W
#

_chem_comp.id                                   Z6W
_chem_comp.name                                 "(5R)-5-[(2R)-2-hydroxynonyl]-beta-D-xylulofuranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H28 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       292.369
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z6W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1IZ2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z6W  O2    O2    O  0  1  N  Y  N  -37.764  113.205  37.436    4.435   1.257   1.322  O2    Z6W   1  
Z6W  C1    C1    C  0  1  N  N  N  -37.427  111.710  35.619    4.091   1.607  -1.050  C1    Z6W   2  
Z6W  C2    C2    C  0  1  N  N  R  -37.289  111.962  37.064    3.826   0.702   0.154  C2    Z6W   3  
Z6W  C3    C3    C  0  1  N  N  S  -35.922  111.830  37.513    4.394  -0.706  -0.114  C3    Z6W   4  
Z6W  C4    C4    C  0  1  N  N  S  -36.162  112.031  38.862    3.151  -1.628  -0.087  C4    Z6W   5  
Z6W  C5    C5    C  0  1  N  N  R  -37.096  110.974  39.030    1.998  -0.626  -0.352  C5    Z6W   6  
Z6W  O1    O1    O  0  1  N  N  N  -36.913  112.654  34.862    3.555   2.907  -0.796  O1    Z6W   7  
Z6W  O3    O3    O  0  1  N  N  N  -35.068  112.729  37.017    5.315  -1.077   0.914  O3    Z6W   8  
Z6W  O4    O4    O  0  1  N  N  N  -35.076  111.932  39.630    3.221  -2.609  -1.123  O4    Z6W   9  
Z6W  O5    O5    O  0  1  N  N  N  -37.835  110.997  37.856    2.410   0.563   0.360  O5    Z6W  10  
Z6W  C7    C7    C  0  1  N  N  R  -38.836  110.136  40.476   -0.460  -0.215  -0.173  C7    Z6W  11  
Z6W  C8    C8    C  0  1  N  N  N  -39.491  110.113  41.725   -1.794  -0.812   0.280  C8    Z6W  12  
Z6W  C9    C9    C  0  1  N  N  N  -40.867  110.356  41.574   -2.942   0.072  -0.212  C9    Z6W  13  
Z6W  C10   C10   C  0  1  N  N  N  -41.474  110.364  42.830   -4.275  -0.525   0.242  C10   Z6W  14  
Z6W  C11   C11   C  0  1  N  N  N  -42.843  110.620  42.692   -5.424   0.358  -0.250  C11   Z6W  15  
Z6W  C12   C12   C  0  1  N  N  N  -43.399  110.673  43.972   -6.757  -0.239   0.204  C12   Z6W  16  
Z6W  C13   C13   C  0  1  N  N  N  -43.945  111.969  44.123   -7.905   0.644  -0.289  C13   Z6W  17  
Z6W  C14   C14   C  0  1  N  N  N  -44.515  112.108  45.390   -9.239   0.047   0.165  C14   Z6W  18  
Z6W  O7    O7    O  0  1  N  N  N  -39.131  109.231  39.577   -0.263   1.050   0.462  O7    Z6W  19  
Z6W  C6    C6    C  0  1  N  N  N  -37.869  111.167  40.222    0.679  -1.161   0.210  C6    Z6W  20  
Z6W  HO2   HO2   H  0  1  N  Y  N  -37.653  113.319  38.373    4.117   2.142   1.548  HO2   Z6W  21  
Z6W  H11   H11   H  0  1  N  N  N  -36.921  110.763  35.383    5.165   1.684  -1.219  H11   Z6W  22  
Z6W  H12   H12   H  0  1  N  N  N  -38.498  111.622  35.384    3.614   1.184  -1.934  H12   Z6W  23  
Z6W  H3    H3    H  0  1  N  N  N  -35.571  110.803  37.333    4.876  -0.743  -1.091  H3    Z6W  24  
Z6W  H4    H4    H  0  1  N  N  N  -36.666  112.996  39.017    3.038  -2.101   0.889  H4    Z6W  25  
Z6W  H5    H5    H  0  1  N  N  N  -36.553  110.021  39.106    1.906  -0.420  -1.418  H5    Z6W  26  
Z6W  HO1   HO1   H  0  1  N  N  N  -37.036  112.429  33.947    3.686   3.536  -1.519  HO1   Z6W  27  
Z6W  HO3   HO3   H  0  1  N  N  N  -34.199  112.566  37.365    5.703  -1.955   0.795  HO3   Z6W  28  
Z6W  HO4   HO4   H  0  1  N  N  N  -35.315  112.081  40.537    3.980  -3.204  -1.049  HO4   Z6W  29  
Z6W  H7    H7    H  0  1  N  N  N  -38.043  109.486  40.876   -0.472  -0.080  -1.255  H7    Z6W  30  
Z6W  H71   H71   H  0  1  N  N  N  -39.348  109.126  42.188   -1.903  -1.814  -0.134  H71   Z6W  31  
Z6W  H72   H72   H  0  1  N  N  N  -39.057  110.888  42.373   -1.817  -0.864   1.369  H72   Z6W  32  
Z6W  H81   H81   H  0  1  N  N  N  -41.017  111.331  41.087   -2.833   1.074   0.203  H81   Z6W  33  
Z6W  H82   H82   H  0  1  N  N  N  -41.314  109.564  40.955   -2.919   0.124  -1.300  H82   Z6W  34  
Z6W  H91   H91   H  0  1  N  N  N  -41.332  109.385  43.311   -4.385  -1.528  -0.172  H91   Z6W  35  
Z6W  H92   H92   H  0  1  N  N  N  -41.017  111.148  43.452   -4.298  -0.578   1.331  H92   Z6W  36  
Z6W  H101  H101  H  0  0  N  N  N  -42.994  111.581  42.178   -5.314   1.360   0.164  H101  Z6W  37  
Z6W  H102  H102  H  0  0  N  N  N  -43.317  109.815  42.111   -5.401   0.410  -1.339  H102  Z6W  38  
Z6W  H111  H111  H  0  0  N  N  N  -44.189  109.914  44.074   -6.866  -1.241  -0.211  H111  Z6W  39  
Z6W  H112  H112  H  0  0  N  N  N  -42.622  110.498  44.731   -6.780  -0.292   1.292  H112  Z6W  40  
Z6W  H121  H121  H  0  0  N  N  N  -43.147  112.716  44.000   -7.796   1.646   0.126  H121  Z6W  41  
Z6W  H122  H122  H  0  0  N  N  N  -44.718  112.129  43.357   -7.882   0.697  -1.377  H122  Z6W  42  
Z6W  H131  H131  H  0  0  N  N  N  -44.936  113.119  45.495   -9.348  -0.955  -0.249  H131  Z6W  43  
Z6W  H132  H132  H  0  0  N  N  N  -45.315  111.364  45.516   -9.262  -0.005   1.254  H132  Z6W  44  
Z6W  H133  H133  H  0  0  N  N  N  -43.744  111.951  46.158  -10.057   0.677  -0.185  H133  Z6W  45  
Z6W  HO7   HO7   H  0  1  N  N  N  -38.611  109.378  38.796   -0.242   1.006   1.428  HO7   Z6W  46  
Z6W  H61   H61   H  0  1  N  N  N  -37.178  111.209  41.077    0.484  -2.151  -0.202  H61   Z6W  47  
Z6W  H62   H62   H  0  1  N  N  N  -38.403  112.125  40.135    0.747  -1.226   1.296  H62   Z6W  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z6W  O2   C2    SING  N  N   1  
Z6W  C1   C2    SING  N  N   2  
Z6W  C1   O1    SING  N  N   3  
Z6W  C1   H11   SING  N  N   4  
Z6W  C1   H12   SING  N  N   5  
Z6W  C2   C3    SING  N  N   6  
Z6W  C2   O5    SING  N  N   7  
Z6W  C3   C4    SING  N  N   8  
Z6W  C3   O3    SING  N  N   9  
Z6W  C3   H3    SING  N  N  10  
Z6W  C4   C5    SING  N  N  11  
Z6W  C4   O4    SING  N  N  12  
Z6W  C4   H4    SING  N  N  13  
Z6W  C5   O5    SING  N  N  14  
Z6W  C5   C6    SING  N  N  15  
Z6W  C5   H5    SING  N  N  16  
Z6W  O1   HO1   SING  N  N  17  
Z6W  O3   HO3   SING  N  N  18  
Z6W  O4   HO4   SING  N  N  19  
Z6W  C7   C8    SING  N  N  20  
Z6W  C7   O7    SING  N  N  21  
Z6W  C7   C6    SING  N  N  22  
Z6W  C7   H7    SING  N  N  23  
Z6W  C8   C9    SING  N  N  24  
Z6W  C8   H71   SING  N  N  25  
Z6W  C8   H72   SING  N  N  26  
Z6W  C9   C10   SING  N  N  27  
Z6W  C9   H81   SING  N  N  28  
Z6W  C9   H82   SING  N  N  29  
Z6W  C10  C11   SING  N  N  30  
Z6W  C10  H91   SING  N  N  31  
Z6W  C10  H92   SING  N  N  32  
Z6W  C11  C12   SING  N  N  33  
Z6W  C11  H101  SING  N  N  34  
Z6W  C11  H102  SING  N  N  35  
Z6W  C12  C13   SING  N  N  36  
Z6W  C12  H111  SING  N  N  37  
Z6W  C12  H112  SING  N  N  38  
Z6W  C13  C14   SING  N  N  39  
Z6W  C13  H121  SING  N  N  40  
Z6W  C13  H122  SING  N  N  41  
Z6W  C14  H131  SING  N  N  42  
Z6W  C14  H132  SING  N  N  43  
Z6W  C14  H133  SING  N  N  44  
Z6W  O7   HO7   SING  N  N  45  
Z6W  C6   H61   SING  N  N  46  
Z6W  C6   H62   SING  N  N  47  
Z6W  HO2  O2    SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z6W  SMILES            ACDLabs               12.01  "OC1C(O)C(OC1(O)CO)CC(O)CCCCCCC"  
Z6W  InChI             InChI                 1.03   "InChI=1S/C14H28O6/c1-2-3-4-5-6-7-10(16)8-11-12(17)13(18)14(19,9-15)20-11/h10-13,15-19H,2-9H2,1H3/t10-,11-,12-,13+,14-/m1/s1"  
Z6W  InChIKey          InChI                 1.03   ACFOUPJNYNVPQE-XGFWRYKXSA-N  
Z6W  SMILES_CANONICAL  CACTVS                3.370  "CCCCCCC[C@@H](O)C[C@H]1O[C@](O)(CO)[C@@H](O)[C@@H]1O"  
Z6W  SMILES            CACTVS                3.370  "CCCCCCC[CH](O)C[CH]1O[C](O)(CO)[CH](O)[CH]1O"  
Z6W  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCCCCC(C[C@@H]1[C@H]([C@@H]([C@](O1)(CO)O)O)O)O"  
Z6W  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCCCCC(CC1C(C(C(O1)(CO)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z6W  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5R)-5-[(2R)-2-hydroxynonyl]-beta-D-xylulofuranose"  
Z6W  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R,3S,4S,5R)-2-(hydroxymethyl)-5-(2-oxidanylnonyl)oxolane-2,3,4-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z6W  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z6W  "CARBOHYDRATE RING"                    furanose  PDB  ?  
Z6W  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
Z6W  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z6W  "Create component"          2012-12-17  RCSB  
Z6W  "Modify atom id"            2020-05-09  RCSB  
Z6W  "Modify component atom id"  2020-07-17  RCSB  
Z6W  "Initial release"           2020-07-29  RCSB  
##
