data_YSW
# 
_chem_comp.id                                    YSW 
_chem_comp.name                                  "(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl dodecanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H58 N O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-17 
_chem_comp.pdbx_modified_date                    2023-03-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        579.746 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YSW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FD7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YSW C01 C1  C 0 1 N N N 158.204 195.041 189.344 14.623  -4.510 -1.362 C01 YSW 1  
YSW C02 C2  C 0 1 N N N 159.269 195.430 188.440 13.660  -4.048 -0.266 C02 YSW 2  
YSW C03 C3  C 0 1 N N N 158.588 196.301 187.445 12.356  -3.564 -0.904 C03 YSW 3  
YSW C04 C4  C 0 1 N N N 158.698 195.864 186.052 11.394  -3.102 0.192  C04 YSW 4  
YSW C05 C5  C 0 1 N N N 159.321 196.844 185.195 10.090  -2.617 -0.446 C05 YSW 5  
YSW C06 C6  C 0 1 N N N 158.675 197.048 183.900 9.127   -2.155 0.650  C06 YSW 6  
YSW C07 C7  C 0 1 N N N 158.750 198.466 183.493 7.823   -1.671 0.012  C07 YSW 7  
YSW C08 C8  C 0 1 N N N 159.117 198.631 182.108 6.860   -1.209 1.107  C08 YSW 8  
YSW C09 C9  C 0 1 N N N 160.422 198.066 181.869 5.557   -0.725 0.470  C09 YSW 9  
YSW C10 C10 C 0 1 N N N 160.707 197.907 180.418 4.594   -0.263 1.565  C10 YSW 10 
YSW C11 C11 C 0 1 N N N 160.579 199.166 179.737 3.290   0.221  0.927  C11 YSW 11 
YSW C12 C12 C 0 1 N N N 160.399 198.990 178.311 2.342   0.676  2.007  C12 YSW 12 
YSW C15 C13 C 0 1 N N N 162.289 198.852 176.974 0.267   1.566  2.770  C15 YSW 13 
YSW C16 C14 C 0 1 N N S 163.486 197.948 176.795 -1.065  2.066  2.206  C16 YSW 14 
YSW C17 C15 C 0 1 N N N 163.671 197.582 175.336 -0.801  3.168  1.177  C17 YSW 15 
YSW C23 C16 C 0 1 N N N 167.699 196.232 172.894 2.398   3.318  -3.019 C23 YSW 16 
YSW C24 C17 C 0 1 N N N 168.693 196.945 172.035 3.357   2.273  -3.595 C24 YSW 17 
YSW C27 C18 C 0 1 N N N 164.956 199.782 177.538 -3.105  1.010  1.573  C27 YSW 18 
YSW C29 C19 C 0 1 N N N 165.180 200.272 178.945 -3.899  -0.098 0.930  C29 YSW 19 
YSW C30 C20 C 0 1 N N N 164.403 199.544 180.017 -5.394  0.195  1.075  C30 YSW 20 
YSW C31 C21 C 0 1 N N N 164.458 200.249 181.372 -6.200  -0.930 0.422  C31 YSW 21 
YSW C32 C22 C 0 1 N N N 163.625 199.695 182.489 -7.694  -0.637 0.567  C32 YSW 22 
YSW C33 C23 C 0 1 N N N 164.200 198.473 183.126 -8.500  -1.761 -0.086 C33 YSW 23 
YSW C34 C24 C 0 1 N N N 164.628 198.655 184.538 -9.995  -1.469 0.060  C34 YSW 24 
YSW C35 C25 C 0 1 N N N 164.514 197.414 185.334 -10.801 -2.593 -0.594 C35 YSW 25 
YSW C36 C26 C 0 1 N N N 163.599 197.452 186.517 -12.296 -2.300 -0.448 C36 YSW 26 
YSW C37 C27 C 0 1 N N N 164.182 196.809 187.745 -13.102 -3.425 -1.102 C37 YSW 27 
YSW C38 C28 C 0 1 N N N 163.168 196.185 188.634 -14.596 -3.132 -0.956 C38 YSW 28 
YSW C39 C29 C 0 1 N N N 163.602 195.561 189.936 -15.402 -4.256 -1.610 C39 YSW 29 
YSW N25 N1  N 0 1 N N N 169.589 195.977 171.377 2.585   1.157  -4.156 N25 YSW 30 
YSW O13 O1  O 0 1 N N N 159.562 199.478 177.665 2.674   0.619  3.167  O13 YSW 31 
YSW O14 O2  O 0 1 N N N 161.320 198.201 177.814 1.127   1.145  1.679  O14 YSW 32 
YSW O18 O3  O 0 1 N N N 164.743 198.194 174.564 0.095   2.680  0.176  O18 YSW 33 
YSW O20 O4  O 0 1 N N N 165.865 196.172 175.242 1.196   4.828  -0.561 O20 YSW 34 
YSW O21 O5  O 0 1 N N N 166.956 198.502 175.429 -0.663  3.927  -2.011 O21 YSW 35 
YSW O22 O6  O 0 1 N N N 166.635 197.178 173.144 1.688   2.755  -1.914 O22 YSW 36 
YSW O26 O7  O 0 1 N N N 164.732 198.463 177.368 -1.764  0.965  1.567  O26 YSW 37 
YSW O28 O8  O 0 1 N N N 164.980 200.508 176.597 -3.677  1.938  2.095  O28 YSW 38 
YSW P19 P1  P 0 1 N N N 166.177 197.492 174.644 0.592   3.575  -1.066 P19 YSW 39 
YSW H1  H1  H 0 1 N N N 158.610 194.385 190.129 14.169  -5.326 -1.924 H1  YSW 40 
YSW H2  H2  H 0 1 N N N 157.769 195.939 189.806 14.834  -3.678 -2.034 H2  YSW 41 
YSW H3  H3  H 0 1 N N N 157.425 194.503 188.783 15.552  -4.855 -0.907 H3  YSW 42 
YSW H4  H4  H 0 1 N N N 159.711 194.549 187.952 13.449  -4.879 0.407  H4  YSW 43 
YSW H5  H5  H 0 1 N N N 160.054 195.985 188.975 14.114  -3.232 0.296  H5  YSW 44 
YSW H6  H6  H 0 1 N N N 159.024 197.308 187.521 12.568  -2.732 -1.576 H6  YSW 45 
YSW H7  H7  H 0 1 N N N 157.520 196.343 187.705 11.902  -4.379 -1.466 H7  YSW 46 
YSW H8  H8  H 0 1 N N N 157.687 195.658 185.670 11.182  -3.933 0.864  H8  YSW 47 
YSW H9  H9  H 0 1 N N N 159.297 194.942 186.021 11.848  -2.286 0.754  H9  YSW 48 
YSW H10 H10 H 0 1 N N N 160.357 196.523 185.010 10.301  -1.786 -1.118 H10 YSW 49 
YSW H11 H11 H 0 1 N N N 159.325 197.807 185.727 9.636   -3.433 -1.008 H11 YSW 50 
YSW H12 H12 H 0 1 N N N 157.619 196.749 183.973 8.916   -2.987 1.322  H12 YSW 51 
YSW H13 H13 H 0 1 N N N 159.180 196.429 183.144 9.581   -1.339 1.212  H13 YSW 52 
YSW H14 H14 H 0 1 N N N 159.500 198.972 184.118 8.035   -0.840 -0.661 H14 YSW 53 
YSW H15 H15 H 0 1 N N N 157.766 198.930 183.654 7.369   -2.487 -0.551 H15 YSW 54 
YSW H16 H16 H 0 1 N N N 159.134 199.703 181.862 6.649   -2.040 1.780  H16 YSW 55 
YSW H17 H17 H 0 1 N N N 158.378 198.121 181.473 7.315   -0.393 1.670  H17 YSW 56 
YSW H18 H18 H 0 1 N N N 160.474 197.079 182.351 5.768   0.106  -0.203 H18 YSW 57 
YSW H19 H19 H 0 1 N N N 161.181 198.729 182.309 5.102   -1.541 -0.093 H19 YSW 58 
YSW H20 H20 H 0 1 N N N 159.995 197.188 179.986 4.383   -1.094 2.238  H20 YSW 59 
YSW H21 H21 H 0 1 N N N 161.732 197.529 180.290 5.048   0.553  2.128  H21 YSW 60 
YSW H22 H22 H 0 1 N N N 161.489 199.759 179.911 3.501   1.053  0.255  H22 YSW 61 
YSW H23 H23 H 0 1 N N N 159.709 199.703 180.142 2.836   -0.595 0.365  H23 YSW 62 
YSW H24 H24 H 0 1 N N N 162.608 199.794 177.444 0.750   2.369  3.325  H24 YSW 63 
YSW H25 H25 H 0 1 N N N 161.840 199.065 175.993 0.085   0.722  3.435  H25 YSW 64 
YSW H26 H26 H 0 1 N N N 163.252 197.012 177.323 -1.676  2.464  3.016  H26 YSW 65 
YSW H27 H27 H 0 1 N N N 162.729 197.830 174.824 -1.741  3.462  0.711  H27 YSW 66 
YSW H28 H28 H 0 1 N N N 163.833 196.495 175.299 -0.356  4.030  1.674  H28 YSW 67 
YSW H29 H29 H 0 1 N N N 167.308 195.347 172.371 2.965   4.186  -2.683 H29 YSW 68 
YSW H30 H30 H 0 1 N N N 168.165 195.922 173.841 1.689   3.623  -3.789 H30 YSW 69 
YSW H31 H31 H 0 1 N N N 169.290 197.626 172.660 3.961   2.728  -4.379 H31 YSW 70 
YSW H32 H32 H 0 1 N N N 168.159 197.525 171.268 4.008   1.903  -2.803 H32 YSW 71 
YSW H33 H33 H 0 1 N N N 166.251 200.169 179.173 -3.643  -0.162 -0.128 H33 YSW 72 
YSW H34 H34 H 0 1 N N N 164.897 201.334 178.983 -3.665  -1.044 1.418  H34 YSW 73 
YSW H35 H35 H 0 1 N N N 163.352 199.472 179.701 -5.650  0.259  2.133  H35 YSW 74 
YSW H36 H36 H 0 1 N N N 164.822 198.533 180.130 -5.628  1.141  0.587  H36 YSW 75 
YSW H37 H37 H 0 1 N N N 165.506 200.233 181.707 -5.943  -0.993 -0.636 H37 YSW 76 
YSW H38 H38 H 0 1 N N N 164.140 201.290 181.212 -5.966  -1.876 0.910  H38 YSW 77 
YSW H39 H39 H 0 1 N N N 163.521 200.471 183.261 -7.951  -0.573 1.625  H39 YSW 78 
YSW H40 H40 H 0 1 N N N 162.633 199.442 182.088 -7.929  0.309  0.079  H40 YSW 79 
YSW H41 H41 H 0 1 N N N 163.438 197.680 183.098 -8.244  -1.825 -1.143 H41 YSW 80 
YSW H42 H42 H 0 1 N N N 165.076 198.160 182.539 -8.266  -2.707 0.402  H42 YSW 81 
YSW H43 H43 H 0 1 N N N 165.678 198.984 184.548 -10.252 -1.405 1.117  H43 YSW 82 
YSW H44 H44 H 0 1 N N N 163.997 199.428 185.000 -10.229 -0.523 -0.429 H44 YSW 83 
YSW H45 H45 H 0 1 N N N 164.156 196.620 184.662 -10.545 -2.657 -1.651 H45 YSW 84 
YSW H46 H46 H 0 1 N N N 165.520 197.160 185.700 -10.567 -3.539 -0.106 H46 YSW 85 
YSW H47 H47 H 0 1 N N N 163.372 198.503 186.748 -12.552 -2.237 0.609  H47 YSW 86 
YSW H48 H48 H 0 1 N N N 162.669 196.925 186.256 -12.530 -1.354 -0.937 H48 YSW 87 
YSW H49 H49 H 0 1 N N N 164.890 196.030 187.426 -12.845 -3.489 -2.159 H49 YSW 88 
YSW H50 H50 H 0 1 N N N 164.719 197.579 188.318 -12.867 -4.371 -0.613 H50 YSW 89 
YSW H51 H51 H 0 1 N N N 162.437 196.968 188.883 -14.853 -3.068 0.101  H51 YSW 90 
YSW H52 H52 H 0 1 N N N 162.674 195.394 188.050 -14.830 -2.186 -1.445 H52 YSW 91 
YSW H53 H53 H 0 1 N N N 162.724 195.152 190.458 -16.467 -4.048 -1.506 H53 YSW 92 
YSW H54 H54 H 0 1 N N N 164.318 194.751 189.734 -15.146 -4.320 -2.667 H54 YSW 93 
YSW H55 H55 H 0 1 N N N 164.081 196.325 190.567 -15.168 -5.202 -1.121 H55 YSW 94 
YSW H56 H56 H 0 1 N N N 170.248 196.467 170.806 3.196   0.453  -4.543 H56 YSW 95 
YSW H57 H57 H 0 1 N N N 170.077 195.449 172.072 1.968   0.759  -3.463 H57 YSW 96 
YSW H59 H59 H 0 1 N N N 167.171 198.143 176.282 -1.109  3.151  -2.378 H59 YSW 97 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YSW N25 C24 SING N N 1  
YSW C24 C23 SING N N 2  
YSW C23 O22 SING N N 3  
YSW O22 P19 SING N N 4  
YSW O18 P19 SING N N 5  
YSW O18 C17 SING N N 6  
YSW P19 O20 DOUB N N 7  
YSW P19 O21 SING N N 8  
YSW C17 C16 SING N N 9  
YSW O28 C27 DOUB N N 10 
YSW C16 C15 SING N N 11 
YSW C16 O26 SING N N 12 
YSW C15 O14 SING N N 13 
YSW O26 C27 SING N N 14 
YSW C27 C29 SING N N 15 
YSW O13 C12 DOUB N N 16 
YSW O14 C12 SING N N 17 
YSW C12 C11 SING N N 18 
YSW C29 C30 SING N N 19 
YSW C11 C10 SING N N 20 
YSW C30 C31 SING N N 21 
YSW C10 C09 SING N N 22 
YSW C31 C32 SING N N 23 
YSW C09 C08 SING N N 24 
YSW C08 C07 SING N N 25 
YSW C32 C33 SING N N 26 
YSW C33 C34 SING N N 27 
YSW C07 C06 SING N N 28 
YSW C06 C05 SING N N 29 
YSW C34 C35 SING N N 30 
YSW C05 C04 SING N N 31 
YSW C35 C36 SING N N 32 
YSW C04 C03 SING N N 33 
YSW C36 C37 SING N N 34 
YSW C03 C02 SING N N 35 
YSW C37 C38 SING N N 36 
YSW C02 C01 SING N N 37 
YSW C38 C39 SING N N 38 
YSW C01 H1  SING N N 39 
YSW C01 H2  SING N N 40 
YSW C01 H3  SING N N 41 
YSW C02 H4  SING N N 42 
YSW C02 H5  SING N N 43 
YSW C03 H6  SING N N 44 
YSW C03 H7  SING N N 45 
YSW C04 H8  SING N N 46 
YSW C04 H9  SING N N 47 
YSW C05 H10 SING N N 48 
YSW C05 H11 SING N N 49 
YSW C06 H12 SING N N 50 
YSW C06 H13 SING N N 51 
YSW C07 H14 SING N N 52 
YSW C07 H15 SING N N 53 
YSW C08 H16 SING N N 54 
YSW C08 H17 SING N N 55 
YSW C09 H18 SING N N 56 
YSW C09 H19 SING N N 57 
YSW C10 H20 SING N N 58 
YSW C10 H21 SING N N 59 
YSW C11 H22 SING N N 60 
YSW C11 H23 SING N N 61 
YSW C15 H24 SING N N 62 
YSW C15 H25 SING N N 63 
YSW C16 H26 SING N N 64 
YSW C17 H27 SING N N 65 
YSW C17 H28 SING N N 66 
YSW C23 H29 SING N N 67 
YSW C23 H30 SING N N 68 
YSW C24 H31 SING N N 69 
YSW C24 H32 SING N N 70 
YSW C29 H33 SING N N 71 
YSW C29 H34 SING N N 72 
YSW C30 H35 SING N N 73 
YSW C30 H36 SING N N 74 
YSW C31 H37 SING N N 75 
YSW C31 H38 SING N N 76 
YSW C32 H39 SING N N 77 
YSW C32 H40 SING N N 78 
YSW C33 H41 SING N N 79 
YSW C33 H42 SING N N 80 
YSW C34 H43 SING N N 81 
YSW C34 H44 SING N N 82 
YSW C35 H45 SING N N 83 
YSW C35 H46 SING N N 84 
YSW C36 H47 SING N N 85 
YSW C36 H48 SING N N 86 
YSW C37 H49 SING N N 87 
YSW C37 H50 SING N N 88 
YSW C38 H51 SING N N 89 
YSW C38 H52 SING N N 90 
YSW C39 H53 SING N N 91 
YSW C39 H54 SING N N 92 
YSW C39 H55 SING N N 93 
YSW N25 H56 SING N N 94 
YSW N25 H57 SING N N 95 
YSW O21 H59 SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YSW SMILES           ACDLabs              12.01 "NCCOP(O)(=O)OCC(COC(=O)CCCCCCCCCCC)OC(=O)CCCCCCCCCCC"                                                                                                                       
YSW InChI            InChI                1.06  "InChI=1S/C29H58NO8P/c1-3-5-7-9-11-13-15-17-19-21-28(31)35-25-27(26-37-39(33,34)36-24-23-30)38-29(32)22-20-18-16-14-12-10-8-6-4-2/h27H,3-26,30H2,1-2H3,(H,33,34)/t27-/m0/s1" 
YSW InChIKey         InChI                1.06  ZLGYVWRJIZPQMM-MHZLTWQESA-N                                                                                                                                                  
YSW SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCC(=O)OC[C@@H](CO[P](O)(=O)OCCN)OC(=O)CCCCCCCCCCC"                                                                                                                
YSW SMILES           CACTVS               3.385 "CCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCCN)OC(=O)CCCCCCCCCCC"                                                                                                                  
YSW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCC(=O)OC[C@@H](COP(=O)(O)OCCN)OC(=O)CCCCCCCCCCC"                                                                                                                  
YSW SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCCN)OC(=O)CCCCCCCCCCC"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YSW "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl dodecanoate" 
YSW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-dodecanoyloxy-propyl] dodecanoate"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YSW "Create component" 2023-02-17 RCSB 
YSW "Initial release"  2023-03-22 RCSB 
# 
