data_YNW
# 
_chem_comp.id                                    YNW 
_chem_comp.name                                  "(6M)-2-(benzylamino)-6-(2-chloro-4-methylphenyl)-1H-benzimidazole-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H18 Cl N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-13 
_chem_comp.pdbx_modified_date                    2024-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        391.850 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YNW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FU7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YNW C10  C1  C  0 1 Y N N N N N -14.604 15.501 -16.723 -6.324 1.293  -0.575 C10  YNW 1  
YNW C11  C2  C  0 1 N N N N N N -13.412 15.622 -17.642 -7.721 1.842  -0.707 C11  YNW 2  
YNW C13  C3  C  0 1 Y N N N N N -16.862 14.795 -16.303 -4.144 1.396  0.413  C13  YNW 3  
YNW C15  C4  C  0 1 Y N N N N N -19.026 16.055 -14.174 -1.286 0.596  -0.326 C15  YNW 4  
YNW C16  C5  C  0 1 Y N N N N N -20.136 15.905 -13.353 -0.002 0.099  -0.207 C16  YNW 5  
YNW C18  C6  C  0 1 Y N N N N N -22.072 16.051 -12.324 2.165  -0.327 -0.076 C18  YNW 6  
YNW C20  C7  C  0 1 Y N N N N N -20.272 14.870 -12.421 0.207  -1.271 0.031  C20  YNW 7  
YNW C22  C8  C  0 1 N N N N N N -23.869 17.672 -12.666 4.115  1.162  -0.277 C22  YNW 8  
YNW C23  C9  C  0 1 Y N N N N N -25.352 17.781 -12.413 5.618  1.065  -0.220 C23  YNW 9  
YNW C24  C10 C  0 1 Y N N N N N -26.268 17.337 -13.361 6.339  0.820  -1.373 C24  YNW 10 
YNW C25  C11 C  0 1 Y N N N N N -27.632 17.391 -13.108 7.718  0.732  -1.320 C25  YNW 11 
YNW C26  C12 C  0 1 Y N N N N N -28.096 17.857 -11.888 8.375  0.888  -0.115 C26  YNW 12 
YNW C27  C13 C  0 1 Y N N N N N -27.194 18.269 -10.924 7.654  1.134  1.039  C27  YNW 13 
YNW C28  C14 C  0 1 Y N N N N N -25.829 18.213 -11.178 6.276  1.227  0.986  C28  YNW 14 
YNW C12  C15 C  0 1 Y N N N N N -15.778 14.900 -17.157 -5.426 1.895  0.288  C12  YNW 15 
YNW C2   C16 C  0 1 N N N N N N -19.274 12.865 -11.299 -0.703 -3.571 0.396  C2   YNW 16 
YNW C4   C17 C  0 1 Y N N N N N -19.170 14.009 -12.269 -0.904 -2.134 0.147  C4   YNW 17 
YNW C5   C18 C  0 1 Y N N N N N -18.051 14.132 -13.106 -2.192 -1.618 0.024  C5   YNW 18 
YNW C6   C19 C  0 1 Y N N N N N -17.957 15.173 -14.036 -2.381 -0.258 -0.205 C6   YNW 19 
YNW C7   C20 C  0 1 Y N N N N N -16.807 15.262 -14.975 -3.756 0.283  -0.334 C7   YNW 20 
YNW C8   C21 C  0 1 Y N N N N N -15.621 15.861 -14.552 -4.668 -0.321 -1.197 C8   YNW 21 
YNW C9   C22 C  0 1 Y N N N N N -14.547 15.982 -15.418 -5.946 0.186  -1.314 C9   YNW 22 
YNW N17  N1  N  0 1 Y N N N N N -21.322 16.601 -13.306 1.259  0.674  -0.271 N17  YNW 23 
YNW N19  N2  N  0 1 Y N N N N N -21.487 15.010 -11.754 1.538  -1.466 0.100  N19  YNW 24 
YNW N21  N3  N  0 1 N N N N N N -23.280 16.519 -11.994 3.532  -0.166 -0.067 N21  YNW 25 
YNW O1   O1  O  0 1 N N N N N N -18.279 12.011 -11.304 -1.768 -4.391 0.507  O1   YNW 26 
YNW O3   O2  O  0 1 N N N N N N -20.261 12.724 -10.591 0.422  -4.018 0.502  O3   YNW 27 
YNW CL14 CL1 CL 0 0 N N N N N N -18.309 14.049 -16.913 -3.018 2.152  1.495  CL14 YNW 28 
YNW H34  H1  H  0 1 N N N N N N -12.776 14.731 -17.538 -7.743 2.593  -1.497 H34  YNW 29 
YNW H35  H2  H  0 1 N N N N N N -13.758 15.705 -18.683 -8.407 1.033  -0.956 H35  YNW 30 
YNW H33  H3  H  0 1 N N N N N N -12.833 16.519 -17.375 -8.023 2.298  0.236  H33  YNW 31 
YNW H37  H4  H  0 1 N N N N N N -18.992 16.845 -14.910 -1.441 1.649  -0.509 H37  YNW 32 
YNW H41  H5  H  0 1 N N N N N N -23.379 18.585 -12.298 3.765  1.840  0.502  H41  YNW 33 
YNW H40  H6  H  0 1 N N N N N N -23.700 17.576 -13.749 3.812  1.541  -1.253 H40  YNW 34 
YNW H42  H7  H  0 1 N N N N N N -25.914 16.946 -14.304 5.826  0.697  -2.315 H42  YNW 35 
YNW H43  H8  H  0 1 N N N N N N -28.333 17.069 -13.864 8.281  0.539  -2.221 H43  YNW 36 
YNW H44  H9  H  0 1 N N N N N N -29.157 17.898 -11.691 9.452  0.819  -0.073 H44  YNW 37 
YNW H45  H10 H  0 1 N N N N N N -27.551 18.635 -9.973  8.167  1.257  1.981  H45  YNW 38 
YNW H46  H11 H  0 1 N N N N N N -25.130 18.508 -10.409 5.713  1.423  1.886  H46  YNW 39 
YNW H36  H12 H  0 1 N N N N N N -15.845 14.514 -18.163 -5.728 2.756  0.865  H36  YNW 40 
YNW H30  H13 H  0 1 N N N N N N -17.250 13.412 -13.031 -3.045 -2.273 0.112  H30  YNW 41 
YNW H31  H14 H  0 1 N N N N N N -15.539 16.233 -13.542 -4.374 -1.186 -1.774 H31  YNW 42 
YNW H32  H15 H  0 1 N N N N N N -13.643 16.461 -15.072 -6.653 -0.282 -1.982 H32  YNW 43 
YNW H38  H16 H  0 1 N N N N N N -21.581 17.371 -13.890 1.459  1.611  -0.425 H38  YNW 44 
YNW H39  H18 H  0 1 N N N N N N -23.920 15.761 -12.124 4.110  -0.932 0.079  H39  YNW 45 
YNW H29  H19 H  0 1 N N N N N N -18.461 11.308 -10.692 -1.586 -5.326 0.672  H29  YNW 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YNW O1  C2   SING N N 1  
YNW C2  O3   DOUB N N 2  
YNW C2  C4   SING N N 3  
YNW C4  C5   DOUB Y N 4  
YNW C4  C20  SING Y N 5  
YNW C5  C6   SING Y N 6  
YNW C6  C7   SING N N 7  
YNW C6  C15  DOUB Y N 8  
YNW C7  C8   DOUB Y N 9  
YNW C7  C13  SING Y N 10 
YNW C8  C9   SING Y N 11 
YNW C9  C10  DOUB Y N 12 
YNW C10 C11  SING N N 13 
YNW C10 C12  SING Y N 14 
YNW C12 C13  DOUB Y N 15 
YNW C13 CL14 SING N N 16 
YNW C15 C16  SING Y N 17 
YNW C16 N17  SING Y N 18 
YNW C16 C20  DOUB Y N 19 
YNW N17 C18  SING Y N 20 
YNW C18 N19  DOUB Y N 21 
YNW C18 N21  SING N N 22 
YNW N19 C20  SING Y N 23 
YNW N21 C22  SING N N 24 
YNW C22 C23  SING N N 25 
YNW C23 C24  DOUB Y N 26 
YNW C23 C28  SING Y N 27 
YNW C24 C25  SING Y N 28 
YNW C25 C26  DOUB Y N 29 
YNW C26 C27  SING Y N 30 
YNW C27 C28  DOUB Y N 31 
YNW C11 H34  SING N N 32 
YNW C11 H35  SING N N 33 
YNW C11 H33  SING N N 34 
YNW C15 H37  SING N N 35 
YNW C22 H41  SING N N 36 
YNW C22 H40  SING N N 37 
YNW C24 H42  SING N N 38 
YNW C25 H43  SING N N 39 
YNW C26 H44  SING N N 40 
YNW C27 H45  SING N N 41 
YNW C28 H46  SING N N 42 
YNW C12 H36  SING N N 43 
YNW C5  H30  SING N N 44 
YNW C8  H31  SING N N 45 
YNW C9  H32  SING N N 46 
YNW N17 H38  SING N N 47 
YNW N21 H39  SING N N 48 
YNW O1  H29  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YNW SMILES           ACDLabs              12.01 "O=C(O)c1cc(cc2[NH]c(nc12)NCc1ccccc1)c1ccc(C)cc1Cl"                                                                                                    
YNW InChI            InChI                1.06  "InChI=1S/C22H18ClN3O2/c1-13-7-8-16(18(23)9-13)15-10-17(21(27)28)20-19(11-15)25-22(26-20)24-12-14-5-3-2-4-6-14/h2-11H,12H2,1H3,(H,27,28)(H2,24,25,26)" 
YNW InChIKey         InChI                1.06  MAEATACLGJZGNP-UHFFFAOYSA-N                                                                                                                            
YNW SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(c(Cl)c1)c2cc3[nH]c(NCc4ccccc4)nc3c(c2)C(O)=O"                                                                                                  
YNW SMILES           CACTVS               3.385 "Cc1ccc(c(Cl)c1)c2cc3[nH]c(NCc4ccccc4)nc3c(c2)C(O)=O"                                                                                                  
YNW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)[nH]c(n3)NCc4ccccc4)C(=O)O"                                                                                                
YNW SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)[nH]c(n3)NCc4ccccc4)C(=O)O"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YNW "SYSTEMATIC NAME" ACDLabs              12.01 "(6M)-2-(benzylamino)-6-(2-chloro-4-methylphenyl)-1H-benzimidazole-4-carboxylic acid"           
YNW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-chloranyl-4-methyl-phenyl)-2-[(phenylmethyl)amino]-1~{H}-benzimidazole-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YNW "Create component" 2023-02-13 RCSB 
YNW "Initial release"  2024-02-21 RCSB 
# 
