data_YLW
# 
_chem_comp.id                                    YLW 
_chem_comp.name                                  "2,5-bis(fluoranyl)pyridine-3-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H2 F2 N2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-05 
_chem_comp.pdbx_modified_date                    2024-11-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        140.090 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8RBB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLW C1 C1 C 0 1 Y N N N N N -6.279  -15.673 28.564 0.654  0.982  0.001  C1 YLW 1  
YLW C2 C2 C 0 1 Y N N N N N -7.328  -14.892 28.035 0.656  -0.417 0.001  C2 YLW 2  
YLW C3 C3 C 0 1 Y N N N N N -8.634  -15.379 28.113 -0.570 -1.094 0.000  C3 YLW 3  
YLW C4 C4 C 0 1 Y N N N N N -8.825  -16.587 28.722 -1.735 -0.343 0.001  C4 YLW 4  
YLW C5 C5 C 0 1 Y N N N N N -7.759  -17.299 29.207 -1.651 1.039  0.001  C5 YLW 5  
YLW C6 C6 C 0 1 N N N N N N -7.038  -13.641 27.392 1.889  -1.145 -0.000 C6 YLW 6  
YLW F1 F1 F 0 1 N N N N N N -10.069 -17.117 28.836 -2.940 -0.954 -0.000 F1 YLW 7  
YLW F2 F2 F 0 1 N N N N N N -4.997  -15.264 28.524 1.827  1.653  0.001  F2 YLW 8  
YLW N1 N1 N 0 1 Y N N N N N -6.497  -16.854 29.140 -0.482 1.651  -0.004 N1 YLW 9  
YLW N2 N2 N 0 1 N N N N N N -6.802  -12.675 26.830 2.868  -1.722 -0.001 N2 YLW 10 
YLW H1 H1 H 0 1 N N N N N N -9.464  -14.821 27.706 -0.606 -2.174 -0.001 H1 YLW 11 
YLW H5 H2 H 0 1 N N N N N N -7.944  -18.260 29.663 -2.558 1.626  0.001  H5 YLW 12 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLW N1 C1 DOUB Y N 1  
YLW N1 C5 SING Y N 2  
YLW C1 C2 SING Y N 3  
YLW C1 F2 SING N N 4  
YLW C2 C3 DOUB Y N 5  
YLW C2 C6 SING N N 6  
YLW C3 C4 SING Y N 7  
YLW C4 C5 DOUB Y N 8  
YLW C4 F1 SING N N 9  
YLW C6 N2 TRIP N N 10 
YLW C3 H1 SING N N 11 
YLW C5 H5 SING N N 12 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLW InChI            InChI                1.06  "InChI=1S/C6H2F2N2/c7-5-1-4(2-9)6(8)10-3-5/h1,3H" 
YLW InChIKey         InChI                1.06  KILHWBMAVSISMG-UHFFFAOYSA-N                       
YLW SMILES_CANONICAL CACTVS               3.385 "Fc1cnc(F)c(c1)C#N"                               
YLW SMILES           CACTVS               3.385 "Fc1cnc(F)c(c1)C#N"                               
YLW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cnc(c1C#N)F)F"                               
YLW SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cnc(c1C#N)F)F"                               
# 
_pdbx_chem_comp_identifier.comp_id           YLW 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2,5-bis(fluoranyl)pyridine-3-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLW "Create component" 2023-12-05 PDBE 
YLW "Modify PCM"       2024-09-27 PDBE 
YLW "Initial release"  2024-11-27 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YLW 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C5 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
