data_Y6W
# 
_chem_comp.id                                    Y6W 
_chem_comp.name                                  
"[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-{3-[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]propyl}phosphonate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H29 N2 O13 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-02-04 
_chem_comp.pdbx_modified_date                    2016-03-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        512.402 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y6W 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y6W C1     C1     C 0 1 N N R 24.209 -25.322 6.251  -5.674 -0.885 -0.106 C1     Y6W 1  
Y6W C2     C2     C 0 1 N N R 23.377 -26.595 6.158  -6.750 -0.555 -1.143 C2     Y6W 2  
Y6W O2     O2     O 0 1 N N N 22.032 -26.261 5.788  -6.617 -1.432 -2.264 O2     Y6W 3  
Y6W C3     C3     C 0 1 N N R 23.373 -27.302 7.502  -6.576 0.895  -1.605 C3     Y6W 4  
Y6W O3     O3     O 0 1 N N N 22.679 -28.552 7.383  -7.620 1.234  -2.519 O3     Y6W 5  
Y6W C4     C4     C 0 1 N N R 24.804 -27.557 7.941  -6.642 1.819  -0.386 C4     Y6W 6  
Y6W O4     O4     O 0 1 N N N 25.437 -28.451 7.015  -7.932 1.719  0.220  O4     Y6W 7  
Y6W C5     C5     C 0 1 N N R 25.561 -26.240 7.974  -5.570 1.398  0.623  C5     Y6W 8  
Y6W O5     O5     O 0 1 N N N 25.552 -25.644 6.665  -5.771 0.031  0.987  O5     Y6W 9  
Y6W C6     C6     C 0 1 N N N 27.006 -26.493 8.409  -5.668 2.278  1.870  C6     Y6W 10 
Y6W O6     O6     O 0 1 N N N 27.764 -26.970 7.294  -4.596 1.964  2.761  O6     Y6W 11 
Y6W "C1'"  "C1'"  C 0 1 N N R 28.158 -24.816 13.526 4.953  -0.442 -0.634 "C1'"  Y6W 12 
Y6W "C2'"  "C2'"  C 0 1 N N R 28.673 -25.821 12.509 5.523  -1.406 0.438  "C2'"  Y6W 13 
Y6W "O2'"  "O2'"  O 0 1 N N N 30.030 -26.167 12.822 6.832  -1.853 0.077  "O2'"  Y6W 14 
Y6W "C3'"  "C3'"  C 0 1 N N S 28.634 -25.066 11.190 4.509  -2.575 0.394  "C3'"  Y6W 15 
Y6W "O3'"  "O3'"  O 0 1 N N N 29.965 -24.938 10.671 5.006  -3.639 -0.420 "O3'"  Y6W 16 
Y6W "C4'"  "C4'"  C 0 1 N N R 28.101 -23.693 11.566 3.247  -1.957 -0.238 "C4'"  Y6W 17 
Y6W "O4'"  "O4'"  O 0 1 N N N 27.334 -23.932 12.754 3.523  -0.565 -0.476 "O4'"  Y6W 18 
Y6W "C5'"  "C5'"  C 0 1 N N N 27.179 -23.182 10.457 2.062  -2.097 0.720  "C5'"  Y6W 19 
Y6W "O5'"  "O5'"  O 0 1 N N N 26.277 -24.221 10.069 0.874  -1.627 0.080  "O5'"  Y6W 20 
Y6W CAK    CAK    C 0 1 N N N 23.553 -24.350 7.237  -4.291 -0.766 -0.749 CAK    Y6W 21 
Y6W CAL    CAL    C 0 1 N N N 24.599 -23.356 7.747  -3.223 -1.213 0.250  CAL    Y6W 22 
Y6W CAM    CAM    C 0 1 N N N 24.199 -22.863 9.139  -1.840 -1.094 -0.393 CAM    Y6W 23 
Y6W PAN    PAN    P 0 1 N N N 24.703 -24.076 10.375 -0.567 -1.628 0.798  PAN    Y6W 24 
Y6W OAO    OAO    O 0 1 N N N 24.550 -23.482 11.720 -0.544 -0.614 2.049  OAO    Y6W 25 
Y6W NAZ    NAZ    N 0 1 N N N 27.336 -25.483 14.561 5.385  0.933  -0.371 NAZ    Y6W 26 
Y6W CBA    CBA    C 0 1 N N N 27.921 -25.999 15.651 6.157  1.572  -1.269 CBA    Y6W 27 
Y6W CBB    CBB    C 0 1 N N N 25.950 -25.573 14.400 4.995  1.558  0.782  CBB    Y6W 28 
Y6W CBC    CBC    C 0 1 N N N 25.204 -26.203 15.385 5.392  2.826  1.023  CBC    Y6W 29 
Y6W CBD    CBD    C 0 1 N N N 25.861 -26.720 16.494 6.208  3.484  0.073  CBD    Y6W 30 
Y6W OBE    OBE    O 0 1 N N N 29.270 -25.905 15.797 6.488  1.000  -2.290 OBE    Y6W 31 
Y6W NBF    NBF    N 0 1 N N N 27.193 -26.608 16.601 6.567  2.836  -1.054 NBF    Y6W 32 
Y6W OBG    OBG    O 0 1 N N N 25.152 -27.343 17.474 6.580  4.628  0.268  OBG    Y6W 33 
Y6W OBH    OBH    O 0 1 N N N 24.055 -25.370 10.068 -0.880 -2.993 1.276  OBH    Y6W 34 
Y6W H1     H1     H 0 1 N N N 24.233 -24.847 5.259  -5.819 -1.902 0.258  H1     Y6W 35 
Y6W H2     H2     H 0 1 N N N 23.824 -27.260 5.404  -7.736 -0.679 -0.697 H2     Y6W 36 
Y6W HO2    HO2    H 0 1 N N N 21.513 -27.054 5.730  -7.269 -1.280 -2.962 HO2    Y6W 37 
Y6W H3     H3     H 0 1 N N N 22.877 -26.660 8.245  -5.609 1.008  -2.096 H3     Y6W 38 
Y6W HO3    HO3    H 0 1 N N N 22.676 -28.995 8.224  -7.572 2.141  -2.853 HO3    Y6W 39 
Y6W H4     H4     H 0 1 N N N 24.799 -27.994 8.950  -6.463 2.848  -0.698 H4     Y6W 40 
Y6W HO4    HO4    H 0 1 N N N 26.332 -28.610 7.290  -8.045 2.279  1.000  HO4    Y6W 41 
Y6W H5     H5     H 0 1 N N N 25.082 -25.568 8.701  -4.583 1.513  0.174  H5     Y6W 42 
Y6W H6     H6     H 0 1 N N N 27.447 -25.555 8.778  -5.604 3.327  1.581  H6     Y6W 43 
Y6W H6A    H6A    H 0 1 N N N 27.021 -27.246 9.211  -6.621 2.096  2.369  H6A    Y6W 44 
Y6W HO6    HO6    H 0 1 N N N 28.661 -27.127 7.564  -4.596 2.485  3.576  HO6    Y6W 45 
Y6W "H1'"  "H1'"  H 0 1 N N N 29.000 -24.279 13.986 5.258  -0.754 -1.632 "H1'"  Y6W 46 
Y6W "H2'"  "H2'"  H 0 1 N N N 28.020 -26.706 12.471 5.532  -0.935 1.420  "H2'"  Y6W 47 
Y6W "HO2'" "HO2'" H 0 0 N N N 30.352 -26.795 12.186 7.230  -2.459 0.716  "HO2'" Y6W 48 
Y6W "H3'"  "H3'"  H 0 1 N N N 27.960 -25.563 10.477 4.295  -2.932 1.401  "H3'"  Y6W 49 
Y6W "HO3'" "HO3'" H 0 0 N N N 29.940 -24.466 9.847  5.832  -4.026 -0.100 "HO3'" Y6W 50 
Y6W "H4'"  "H4'"  H 0 1 N N N 28.927 -22.987 11.741 3.024  -2.454 -1.182 "H4'"  Y6W 51 
Y6W "H5'"  "H5'"  H 0 1 N N N 26.606 -22.318 10.826 1.938  -3.145 0.992  "H5'"  Y6W 52 
Y6W "H5'A" "H5'A" H 0 0 N N N 27.783 -22.878 9.589  2.249  -1.508 1.617  "H5'A" Y6W 53 
Y6W HAK    HAK    H 0 1 N N N 22.745 -23.803 6.730  -4.247 -1.398 -1.636 HAK    Y6W 54 
Y6W HAKA   HAKA   H 0 0 N N N 23.138 -24.913 8.086  -4.110 0.271  -1.033 HAKA   Y6W 55 
Y6W HAL    HAL    H 0 1 N N N 25.580 -23.851 7.801  -3.267 -0.581 1.137  HAL    Y6W 56 
Y6W HALA   HALA   H 0 0 N N N 24.658 -22.500 7.058  -3.403 -2.250 0.535  HALA   Y6W 57 
Y6W HAM    HAM    H 0 1 N N N 24.695 -21.903 9.344  -1.796 -1.727 -1.280 HAM    Y6W 58 
Y6W HAMA   HAMA   H 0 0 N N N 23.108 -22.729 9.181  -1.659 -0.057 -0.677 HAMA   Y6W 59 
Y6W HOAO   HOAO   H 0 0 N N N 24.013 -24.051 12.259 -0.345 0.301  1.809  HOAO   Y6W 60 
Y6W HBB    HBB    H 0 1 N N N 25.470 -25.160 13.525 4.371  1.040  1.495  HBB    Y6W 61 
Y6W HBC    HBC    H 0 1 N N N 24.132 -26.290 15.291 5.091  3.330  1.929  HBC    Y6W 62 
Y6W HNBF   HNBF   H 0 0 N N N 27.653 -26.986 17.404 7.123  3.282  -1.712 HNBF   Y6W 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y6W C2    C1     SING N N 1  
Y6W C1    O5     SING N N 2  
Y6W C1    CAK    SING N N 3  
Y6W C1    H1     SING N N 4  
Y6W O2    C2     SING N N 5  
Y6W C2    C3     SING N N 6  
Y6W C2    H2     SING N N 7  
Y6W O2    HO2    SING N N 8  
Y6W O3    C3     SING N N 9  
Y6W C3    C4     SING N N 10 
Y6W C3    H3     SING N N 11 
Y6W O3    HO3    SING N N 12 
Y6W O4    C4     SING N N 13 
Y6W C4    C5     SING N N 14 
Y6W C4    H4     SING N N 15 
Y6W O4    HO4    SING N N 16 
Y6W O5    C5     SING N N 17 
Y6W C5    C6     SING N N 18 
Y6W C5    H5     SING N N 19 
Y6W O6    C6     SING N N 20 
Y6W C6    H6     SING N N 21 
Y6W C6    H6A    SING N N 22 
Y6W O6    HO6    SING N N 23 
Y6W "C2'" "C1'"  SING N N 24 
Y6W "O4'" "C1'"  SING N N 25 
Y6W "C1'" NAZ    SING N N 26 
Y6W "C1'" "H1'"  SING N N 27 
Y6W "C3'" "C2'"  SING N N 28 
Y6W "C2'" "O2'"  SING N N 29 
Y6W "C2'" "H2'"  SING N N 30 
Y6W "O2'" "HO2'" SING N N 31 
Y6W "O3'" "C3'"  SING N N 32 
Y6W "C3'" "C4'"  SING N N 33 
Y6W "C3'" "H3'"  SING N N 34 
Y6W "O3'" "HO3'" SING N N 35 
Y6W "C5'" "C4'"  SING N N 36 
Y6W "C4'" "O4'"  SING N N 37 
Y6W "C4'" "H4'"  SING N N 38 
Y6W "O5'" "C5'"  SING N N 39 
Y6W "C5'" "H5'"  SING N N 40 
Y6W "C5'" "H5'A" SING N N 41 
Y6W "O5'" PAN    SING N N 42 
Y6W CAK   CAL    SING N N 43 
Y6W CAK   HAK    SING N N 44 
Y6W CAK   HAKA   SING N N 45 
Y6W CAL   CAM    SING N N 46 
Y6W CAL   HAL    SING N N 47 
Y6W CAL   HALA   SING N N 48 
Y6W CAM   PAN    SING N N 49 
Y6W CAM   HAM    SING N N 50 
Y6W CAM   HAMA   SING N N 51 
Y6W OBH   PAN    DOUB N N 52 
Y6W PAN   OAO    SING N N 53 
Y6W OAO   HOAO   SING N N 54 
Y6W CBB   NAZ    SING N N 55 
Y6W NAZ   CBA    SING N N 56 
Y6W CBA   OBE    DOUB N N 57 
Y6W CBA   NBF    SING N N 58 
Y6W CBB   CBC    DOUB N N 59 
Y6W CBB   HBB    SING N N 60 
Y6W CBC   CBD    SING N N 61 
Y6W CBC   HBC    SING N N 62 
Y6W CBD   NBF    SING N N 63 
Y6W CBD   OBG    DOUB N N 64 
Y6W NBF   HNBF   SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y6W SMILES           ACDLabs              12.01 "C1(OC(C(C(C1O)O)O)CO)CCCP(OCC3C(C(C(N2C(=O)NC(C=C2)=O)O3)O)O)(O)=O" 
Y6W InChI            InChI                1.03  
"InChI=1S/C18H29N2O13P/c21-6-9-13(24)15(26)12(23)8(32-9)2-1-5-34(29,30)31-7-10-14(25)16(27)17(33-10)20-4-3-11(22)19-18(20)28/h3-4,8-10,12-17,21,23-27H,1-2,5-7H2,(H,29,30)(H,19,22,28)/t8-,9-,10-,12+,13+,14-,15-,16-,17-/m1/s1" 
Y6W InChIKey         InChI                1.03  PDUJCKZVDKZKPQ-RUIRHDHUSA-N 
Y6W SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](CCC[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@@H](O)[C@H]1O" 
Y6W SMILES           CACTVS               3.385 "OC[CH]1O[CH](CCC[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1O" 
Y6W SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(CCC[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)O)O" 
Y6W SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(CCCC3C(C(C(C(O3)CO)O)O)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y6W "SYSTEMATIC NAME" ACDLabs              12.01 
"[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-{3-[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]propyl}phosphonate (non-preferred name)" 
Y6W "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[3-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]propyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y6W "Create component" 2016-02-04 EBI  
Y6W "Initial release"  2016-03-09 RCSB 
# 
