data_Y4W
# 
_chem_comp.id                                    Y4W 
_chem_comp.name                                  "1-[4-({7-[(3,4-difluorophenyl)methyl]-9-methyl-8-oxo-8,9-dihydro-7H-purin-2-yl}amino)benzoyl]piperidine-4-sulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H25 F2 N7 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-11 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        557.572 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y4W 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y4W C11 C1  C 0 1 N N N N N N -10.341 10.577 44.311 5.464  3.818  -1.972 C11 Y4W 1  
Y4W C13 C2  C 0 1 N N N N N N -12.871 6.712  42.794 6.318  0.236  1.371  C13 Y4W 2  
Y4W C15 C3  C 0 1 Y N N N N N -10.875 5.135  42.737 7.627  -1.277 -0.132 C15 Y4W 3  
Y4W C16 C4  C 0 1 Y N N N N N -10.229 3.982  43.110 7.793  -2.472 -0.807 C16 Y4W 4  
Y4W C17 C5  C 0 1 Y N N N N N -10.927 3.063  44.014 6.826  -3.457 -0.718 C17 Y4W 5  
Y4W C18 C6  C 0 1 Y N N N N N -12.190 3.308  44.460 5.689  -3.244 0.048  C18 Y4W 6  
Y4W C19 C7  C 0 1 Y N N N N N -12.909 4.535  44.020 5.526  -2.047 0.723  C19 Y4W 7  
Y4W C20 C8  C 0 1 Y N N N N N -12.972 10.817 49.189 -0.641 1.845  0.114  C20 Y4W 8  
Y4W C21 C9  C 0 1 Y N N N N N -11.687 11.025 48.905 -0.556 0.473  0.336  C21 Y4W 9  
Y4W C22 C10 C 0 1 Y N N N N N -10.923 11.971 49.822 -1.619 -0.203 0.889  C22 Y4W 10 
Y4W C23 C11 C 0 1 Y N N N N N -11.574 12.567 50.837 -2.786 0.489  1.227  C23 Y4W 11 
Y4W C24 C12 C 0 1 Y N N N N N -13.033 12.379 51.119 -2.868 1.866  1.003  C24 Y4W 12 
Y4W C25 C13 C 0 1 Y N N N N N -13.704 11.490 50.316 -1.801 2.536  0.449  C25 Y4W 13 
Y4W C26 C14 C 0 1 N N N N N N -10.787 13.547 51.690 -3.928 -0.233 1.820  C26 Y4W 14 
Y4W C1  C15 C 0 1 Y N N N N N -14.042 7.509  45.713 3.147  0.764  1.064  C1  Y4W 15 
Y4W N2  N1  N 0 1 Y N N N N N -14.208 8.237  46.928 1.926  1.173  0.751  N2  Y4W 16 
Y4W C3  C16 C 0 1 Y N N N N N -13.391 9.351  47.163 1.735  2.131  -0.145 C3  Y4W 17 
Y4W N4  N2  N 0 1 Y N N N N N -12.412 9.866  46.452 2.745  2.722  -0.766 N4  Y4W 18 
Y4W C5  C17 C 0 1 Y N N N N N -12.914 8.103  44.888 4.231  1.356  0.437  C5  Y4W 19 
Y4W C6  C18 C 0 1 Y N N N N N -12.160 9.265  45.328 3.995  2.365  -0.505 C6  Y4W 20 
Y4W N7  N3  N 0 1 N N N N N N -11.274 9.474  44.247 5.231  2.775  -0.969 N7  Y4W 21 
Y4W C8  C19 C 0 1 N N N N N N -11.365 8.599  43.259 6.184  2.056  -0.346 C8  Y4W 22 
Y4W N9  N4  N 0 1 N N N N N N -12.362 7.789  43.610 5.611  1.189  0.511  N9  Y4W 23 
Y4W O10 O1  O 0 1 N N N N N N -10.630 8.539  42.142 7.381  2.173  -0.530 O10 Y4W 24 
Y4W N12 N5  N 0 1 N N N N N N -13.745 9.911  48.402 0.438  2.527  -0.440 N12 Y4W 25 
Y4W C14 C20 C 0 1 Y N N N N N -12.259 5.404  43.241 6.497  -1.067 0.637  C14 Y4W 26 
Y4W O27 O2  O 0 1 N N N N N N -11.142 14.729 51.746 -3.735 -1.092 2.659  O27 Y4W 27 
Y4W N28 N6  N 0 1 N N N N N N -9.698  13.049 52.395 -5.185 0.059  1.432  N28 Y4W 28 
Y4W C29 C21 C 0 1 N N N N N N -9.335  11.674 52.417 -6.338 -0.564 2.096  C29 Y4W 29 
Y4W C30 C22 C 0 1 N N N N N N -9.928  11.220 53.791 -7.225 -1.218 1.032  C30 Y4W 30 
Y4W C31 C23 C 0 1 N N N N N N -9.239  12.062 54.863 -7.597 -0.178 -0.027 C31 Y4W 31 
Y4W C32 C24 C 0 1 N N N N N N -9.504  13.573 54.643 -6.326 0.336  -0.707 C32 Y4W 32 
Y4W C33 C25 C 0 1 N N N N N N -8.956  13.945 53.227 -5.429 1.012  0.340  C33 Y4W 33 
Y4W F34 F1  F 0 1 N N N N N N -12.764 2.340  45.238 4.743  -4.205 0.136  F34 Y4W 34 
Y4W F35 F2  F 0 1 N N N N N N -10.275 1.941  44.373 6.987  -4.625 -1.378 F35 Y4W 35 
Y4W S36 S1  S 0 1 N N N N N N -9.751  11.559 56.524 -8.681 -0.938 -1.266 S36 Y4W 36 
Y4W N37 N7  N 0 1 N N N N N N -9.454  9.915  56.638 -8.890 0.241  -2.411 N37 Y4W 37 
Y4W O38 O3  O 0 1 N N N N N N -8.900  12.421 57.405 -8.000 -1.977 -1.955 O38 Y4W 38 
Y4W O39 O4  O 0 1 N N N N N N -11.180 11.719 56.547 -9.982 -1.142 -0.733 O39 Y4W 39 
Y4W H43 H1  H 0 1 N N N N N N -9.731  10.595 43.396 5.568  4.782  -1.475 H43 Y4W 40 
Y4W H41 H2  H 0 1 N N N N N N -10.896 11.522 44.400 6.377  3.593  -2.523 H41 Y4W 41 
Y4W H42 H3  H 0 1 N N N N N N -9.686  10.453 45.186 4.622  3.853  -2.662 H42 Y4W 42 
Y4W H45 H4  H 0 1 N N N N N N -13.965 6.659  42.898 7.295  0.641  1.636  H45 Y4W 43 
Y4W H46 H5  H 0 1 N N N N N N -12.612 6.897  41.741 5.737  0.066  2.278  H46 Y4W 44 
Y4W H47 H6  H 0 1 N N N N N N -10.388 5.844  42.084 8.382  -0.508 -0.201 H47 Y4W 45 
Y4W H48 H7  H 0 1 N N N N N N -9.236  3.759  42.748 8.678  -2.636 -1.403 H48 Y4W 46 
Y4W H49 H8  H 0 1 N N N N N N -13.929 4.718  44.323 4.641  -1.880 1.319  H49 Y4W 47 
Y4W H50 H9  H 0 1 N N N N N N -11.209 10.545 48.064 0.346  -0.061 0.074  H50 Y4W 48 
Y4W H51 H10 H 0 1 N N N N N N -9.872  12.161 49.659 -1.553 -1.267 1.061  H51 Y4W 49 
Y4W H52 H11 H 0 1 N N N N N N -13.532 12.915 51.913 -3.768 2.403  1.263  H52 Y4W 50 
Y4W H53 H12 H 0 1 N N N N N N -14.748 11.276 50.493 -1.864 3.601  0.276  H53 Y4W 51 
Y4W H40 H13 H 0 1 N N N N N N -14.635 6.655  45.421 3.295  -0.014 1.798  H40 Y4W 52 
Y4W H44 H14 H 0 1 N N N N N N -14.635 9.646  48.773 0.284  3.279  -1.033 H44 Y4W 53 
Y4W H55 H15 H 0 1 N N N N N N -9.791  11.124 51.581 -5.990 -1.322 2.798  H55 Y4W 54 
Y4W H54 H16 H 0 1 N N N N N N -8.243  11.546 52.388 -6.908 0.197  2.629  H54 Y4W 55 
Y4W H56 H17 H 0 1 N N N N N N -11.014 11.394 53.812 -6.684 -2.039 0.562  H56 Y4W 56 
Y4W H57 H18 H 0 1 N N N N N N -9.724  10.152 53.958 -8.132 -1.601 1.500  H57 Y4W 57 
Y4W H58 H19 H 0 1 N N N N N N -8.155  11.884 54.815 -8.116 0.655  0.448  H58 Y4W 58 
Y4W H60 H20 H 0 1 N N N N N N -10.584 13.776 54.693 -5.793 -0.499 -1.162 H60 Y4W 59 
Y4W H59 H21 H 0 1 N N N N N N -8.984  14.162 55.413 -6.593 1.060  -1.478 H59 Y4W 60 
Y4W H62 H22 H 0 1 N N N N N N -7.874  13.761 53.153 -5.926 1.899  0.734  H62 Y4W 61 
Y4W H61 H23 H 0 1 N N N N N N -9.167  14.995 52.977 -4.480 1.295  -0.117 H61 Y4W 62 
Y4W H64 H24 H 0 1 N N N N N N -9.723  9.589  57.544 -8.460 1.104  -2.303 H64 Y4W 63 
Y4W H63 H25 H 0 1 N N N N N N -9.982  9.432  55.940 -9.443 0.068  -3.189 H63 Y4W 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y4W C1  N2  DOUB Y N 1  
Y4W C1  C5  SING Y N 2  
Y4W N2  C3  SING Y N 3  
Y4W C3  N4  DOUB Y N 4  
Y4W C3  N12 SING N N 5  
Y4W N4  C6  SING Y N 6  
Y4W C5  C6  DOUB Y N 7  
Y4W C5  N9  SING N N 8  
Y4W C6  N7  SING N N 9  
Y4W N7  C8  SING N N 10 
Y4W N7  C11 SING N N 11 
Y4W C8  N9  SING N N 12 
Y4W C8  O10 DOUB N N 13 
Y4W N9  C13 SING N N 14 
Y4W N12 C20 SING N N 15 
Y4W C13 C14 SING N N 16 
Y4W C14 C15 DOUB Y N 17 
Y4W C14 C19 SING Y N 18 
Y4W C15 C16 SING Y N 19 
Y4W C16 C17 DOUB Y N 20 
Y4W C17 C18 SING Y N 21 
Y4W C17 F35 SING N N 22 
Y4W C18 C19 DOUB Y N 23 
Y4W C18 F34 SING N N 24 
Y4W C20 C21 DOUB Y N 25 
Y4W C20 C25 SING Y N 26 
Y4W C21 C22 SING Y N 27 
Y4W C22 C23 DOUB Y N 28 
Y4W C23 C24 SING Y N 29 
Y4W C23 C26 SING N N 30 
Y4W C24 C25 DOUB Y N 31 
Y4W C26 O27 DOUB N N 32 
Y4W C26 N28 SING N N 33 
Y4W N28 C29 SING N N 34 
Y4W N28 C33 SING N N 35 
Y4W C29 C30 SING N N 36 
Y4W C30 C31 SING N N 37 
Y4W C31 C32 SING N N 38 
Y4W C31 S36 SING N N 39 
Y4W C32 C33 SING N N 40 
Y4W S36 N37 SING N N 41 
Y4W S36 O38 DOUB N N 42 
Y4W S36 O39 DOUB N N 43 
Y4W C11 H43 SING N N 44 
Y4W C11 H41 SING N N 45 
Y4W C11 H42 SING N N 46 
Y4W C13 H45 SING N N 47 
Y4W C13 H46 SING N N 48 
Y4W C15 H47 SING N N 49 
Y4W C16 H48 SING N N 50 
Y4W C19 H49 SING N N 51 
Y4W C21 H50 SING N N 52 
Y4W C22 H51 SING N N 53 
Y4W C24 H52 SING N N 54 
Y4W C25 H53 SING N N 55 
Y4W C1  H40 SING N N 56 
Y4W N12 H44 SING N N 57 
Y4W C29 H55 SING N N 58 
Y4W C29 H54 SING N N 59 
Y4W C30 H56 SING N N 60 
Y4W C30 H57 SING N N 61 
Y4W C31 H58 SING N N 62 
Y4W C32 H60 SING N N 63 
Y4W C32 H59 SING N N 64 
Y4W C33 H62 SING N N 65 
Y4W C33 H61 SING N N 66 
Y4W N37 H64 SING N N 67 
Y4W N37 H63 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y4W SMILES           ACDLabs              12.01 "NS(=O)(=O)C1CCN(CC1)C(=O)c1ccc(cc1)Nc1ncc2c(n1)N(C)C(=O)N2Cc1ccc(F)c(F)c1"                                                                                                                                 
Y4W InChI            InChI                1.06  "InChI=1S/C25H25F2N7O4S/c1-32-22-21(34(25(32)36)14-15-2-7-19(26)20(27)12-15)13-29-24(31-22)30-17-5-3-16(4-6-17)23(35)33-10-8-18(9-11-33)39(28,37)38/h2-7,12-13,18H,8-11,14H2,1H3,(H2,28,37,38)(H,29,30,31)" 
Y4W InChIKey         InChI                1.06  IBSMVQZPUVXXRF-UHFFFAOYSA-N                                                                                                                                                                                 
Y4W SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(Cc2ccc(F)c(F)c2)c3cnc(Nc4ccc(cc4)C(=O)N5CCC(CC5)[S](N)(=O)=O)nc13"                                                                                                                               
Y4W SMILES           CACTVS               3.385 "CN1C(=O)N(Cc2ccc(F)c(F)c2)c3cnc(Nc4ccc(cc4)C(=O)N5CCC(CC5)[S](N)(=O)=O)nc13"                                                                                                                               
Y4W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(cnc(n2)Nc3ccc(cc3)C(=O)N4CCC(CC4)S(=O)(=O)N)N(C1=O)Cc5ccc(c(c5)F)F"                                                                                                                                 
Y4W SMILES           "OpenEye OEToolkits" 2.0.7 "CN1c2c(cnc(n2)Nc3ccc(cc3)C(=O)N4CCC(CC4)S(=O)(=O)N)N(C1=O)Cc5ccc(c(c5)F)F"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y4W "SYSTEMATIC NAME" ACDLabs              12.01 "1-[4-({7-[(3,4-difluorophenyl)methyl]-9-methyl-8-oxo-8,9-dihydro-7H-purin-2-yl}amino)benzoyl]piperidine-4-sulfonamide"         
Y4W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[[7-[[3,4-bis(fluoranyl)phenyl]methyl]-9-methyl-8-oxidanylidene-purin-2-yl]amino]phenyl]carbonylpiperidine-4-sulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y4W "Create component" 2023-06-11 RCSB 
Y4W "Initial release"  2024-12-18 RCSB 
# 
