data_Y1W
#

_chem_comp.id                                   Y1W
_chem_comp.name                                 "(1S)-2-[(2r,5S)-5-{[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]amino}-1,3-dioxan-2-yl]-1-(3-fluoro-6-methoxyquinolin-4-yl)ethan-1-ol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H27 F N2 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-26
_chem_comp.pdbx_modified_date                   2021-10-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       470.490
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y1W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7MVS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y1W  C02   C1   C  0  1  Y  N  N  -7.135  -50.968  -29.670    5.537   2.103   0.191  C02   Y1W   1  
Y1W  C03   C2   C  0  1  Y  N  N  -6.800  -50.465  -28.439    4.806   0.960   0.361  C03   Y1W   2  
Y1W  C04   C3   C  0  1  N  N  S  -6.476  -48.969  -28.277    3.366   1.020   0.801  C04   Y1W   3  
Y1W  C06   C4   C  0  1  N  N  N  -7.589  -48.232  -27.522    2.493   1.473  -0.372  C06   Y1W   4  
Y1W  C07   C5   C  0  1  N  N  N  -7.184  -46.884  -27.098    1.020   1.415   0.036  C07   Y1W   5  
Y1W  C09   C6   C  0  1  N  N  N  -5.627  -45.355  -28.113   -0.727  -0.107   0.646  C09   Y1W   6  
Y1W  C10   C7   C  0  1  N  N  N  -5.431  -44.770  -26.766   -1.609   0.462  -0.471  C10   Y1W   7  
Y1W  C12   C8   C  0  1  N  N  N  -6.055  -42.848  -25.355   -3.910   0.382  -1.219  C12   Y1W   8  
Y1W  C13   C9   C  0  1  Y  N  N  -6.133  -41.318  -25.478   -5.343   0.345  -0.753  C13   Y1W   9  
Y1W  C14   C10  C  0  1  Y  N  N  -5.503  -40.660  -26.531   -5.960  -0.869  -0.518  C14   Y1W  10  
Y1W  C15   C11  C  0  1  Y  N  N  -5.578  -39.234  -26.630   -7.279  -0.907  -0.090  C15   Y1W  11  
Y1W  C17   C12  C  0  1  N  N  N  -4.658  -37.227  -27.565   -9.074  -2.100   0.913  C17   Y1W  12  
Y1W  C18   C13  C  0  1  N  N  N  -5.743  -36.447  -26.814   -9.977  -0.970   0.398  C18   Y1W  13  
Y1W  C20   C14  C  0  1  Y  N  N  -6.259  -38.514  -25.704   -7.976   0.280   0.105  C20   Y1W  14  
Y1W  C21   C15  C  0  1  Y  N  N  -6.902  -39.194  -24.621   -7.350   1.495  -0.133  C21   Y1W  15  
Y1W  C22   C16  C  0  1  Y  N  N  -6.830  -40.580  -24.519   -6.035   1.525  -0.556  C22   Y1W  16  
Y1W  C23   C17  C  0  1  N  N  N  -5.719  -45.719  -25.676   -1.191   1.912  -0.741  C23   Y1W  17  
Y1W  C25   C18  C  0  1  Y  N  N  -6.747  -51.342  -27.337    5.436  -0.274   0.115  C25   Y1W  18  
Y1W  C26   C19  C  0  1  Y  N  N  -6.397  -50.873  -26.033    4.747  -1.488   0.268  C26   Y1W  19  
Y1W  C27   C20  C  0  1  Y  N  N  -6.356  -51.751  -24.952    5.393  -2.665   0.019  C27   Y1W  20  
Y1W  C29   C21  C  0  1  N  N  N  -6.185  -49.938  -23.401    5.457  -5.039  -0.108  C29   Y1W  21  
Y1W  C30   C22  C  0  1  Y  N  N  -6.652  -53.102  -25.142    6.731  -2.675  -0.387  C30   Y1W  22  
Y1W  C31   C23  C  0  1  Y  N  N  -6.992  -53.566  -26.406    7.424  -1.516  -0.544  C31   Y1W  23  
Y1W  C32   C24  C  0  1  Y  N  N  -7.036  -52.663  -27.514    6.792  -0.284  -0.297  C32   Y1W  24  
Y1W  C34   C25  C  0  1  Y  N  N  -7.426  -52.328  -29.824    6.869   2.022  -0.217  C34   Y1W  25  
Y1W  F01   F1   F  0  1  N  N  N  -7.195  -50.157  -30.764    4.970   3.309   0.411  F01   Y1W  26  
Y1W  N11   N1   N  0  1  N  N  N  -6.315  -43.516  -26.628   -3.017   0.425  -0.054  N11   Y1W  27  
Y1W  N33   N2   N  0  1  Y  N  N  -7.377  -53.163  -28.761    7.451   0.869  -0.446  N33   Y1W  28  
Y1W  O05   O1   O  0  1  N  N  N  -6.340  -48.377  -29.536    3.235   1.950   1.878  O05   Y1W  29  
Y1W  O08   O2   O  0  1  N  N  N  -6.816  -46.078  -28.277    0.647   0.057   0.283  O08   Y1W  30  
Y1W  O16   O3   O  0  1  N  N  N  -4.918  -38.612  -27.736   -7.876  -2.110   0.129  O16   Y1W  31  
Y1W  O19   O4   O  0  1  N  N  N  -6.365  -37.109  -25.756   -9.268   0.266   0.533  O19   Y1W  32  
Y1W  O24   O5   O  0  1  N  N  N  -6.067  -46.988  -26.164    0.212   1.947  -1.017  O24   Y1W  33  
Y1W  O28   O6   O  0  1  N  N  N  -6.008  -51.303  -23.669    4.728  -3.841   0.168  O28   Y1W  34  
Y1W  H041  H1   H  0  0  N  N  N  -5.542  -48.874  -27.704    3.045   0.032   1.132  H041  Y1W  35  
Y1W  H062  H2   H  0  0  N  N  N  -8.465  -48.146  -28.181    2.754   2.495  -0.646  H062  Y1W  36  
Y1W  H061  H3   H  0  0  N  N  N  -7.857  -48.817  -26.630    2.661   0.815  -1.224  H061  Y1W  37  
Y1W  H071  H4   H  0  0  N  N  N  -8.032  -46.402  -26.590    0.870   2.003   0.942  H071  Y1W  38  
Y1W  H091  H5   H  0  0  N  N  N  -4.785  -46.033  -28.317   -0.925   0.428   1.575  H091  Y1W  39  
Y1W  H092  H6   H  0  0  N  N  N  -5.623  -44.534  -28.845   -0.947  -1.166   0.781  H092  Y1W  40  
Y1W  H101  H7   H  0  0  N  N  N  -4.383  -44.449  -26.678   -1.480  -0.132  -1.376  H101  Y1W  41  
Y1W  H121  H8   H  0  0  N  N  N  -6.801  -43.183  -24.620   -3.696  -0.510  -1.809  H121  Y1W  42  
Y1W  H122  H9   H  0  0  N  N  N  -5.049  -43.125  -25.008   -3.750   1.269  -1.832  H122  Y1W  43  
Y1W  H141  H10  H  0  0  N  N  N  -4.958  -41.225  -27.273   -5.416  -1.790  -0.669  H141  Y1W  44  
Y1W  H171  H11  H  0  0  N  N  N  -3.716  -37.124  -27.006   -8.827  -1.924   1.960  H171  Y1W  45  
Y1W  H172  H12  H  0  0  N  N  N  -4.544  -36.777  -28.562   -9.588  -3.056   0.813  H172  Y1W  46  
Y1W  H182  H13  H  0  0  N  N  N  -5.280  -35.534  -26.411  -10.220  -1.143  -0.650  H182  Y1W  47  
Y1W  H181  H14  H  0  0  N  N  N  -6.522  -36.173  -27.541  -10.893  -0.935   0.988  H181  Y1W  48  
Y1W  H211  H15  H  0  0  N  N  N  -7.446  -38.628  -23.879   -7.890   2.418   0.017  H211  Y1W  49  
Y1W  H221  H16  H  0  0  N  N  N  -7.314  -41.086  -23.697   -5.548   2.472  -0.737  H221  Y1W  50  
Y1W  H231  H17  H  0  0  N  N  N  -4.825  -45.815  -25.043   -1.742   2.296  -1.600  H231  Y1W  51  
Y1W  H232  H18  H  0  0  N  N  N  -6.554  -45.328  -25.076   -1.408   2.523   0.134  H232  Y1W  52  
Y1W  H261  H19  H  0  0  N  N  N  -6.162  -49.829  -25.884    3.714  -1.491   0.582  H261  Y1W  53  
Y1W  H291  H20  H  0  0  N  N  N  -5.876  -49.724  -22.367    4.810  -5.902   0.049  H291  Y1W  54  
Y1W  H292  H21  H  0  0  N  N  N  -5.573  -49.345  -24.097    5.800  -5.025  -1.142  H292  Y1W  55  
Y1W  H293  H22  H  0  0  N  N  N  -7.245  -49.674  -23.529    6.317  -5.102   0.559  H293  Y1W  56  
Y1W  H301  H23  H  0  0  N  N  N  -6.617  -53.786  -24.307    7.222  -3.618  -0.578  H301  Y1W  57  
Y1W  H311  H24  H  0  0  N  N  N  -7.224  -54.611  -26.552    8.458  -1.541  -0.858  H311  Y1W  58  
Y1W  H341  H25  H  0  0  N  N  N  -7.691  -52.713  -30.797    7.436   2.932  -0.348  H341  Y1W  59  
Y1W  H111  H26  H  0  0  N  N  N  -6.113  -42.886  -27.378   -3.191  -0.354   0.564  H111  Y1W  60  
Y1W  H051  H28  H  0  0  N  N  N  -6.140  -47.454  -29.433    3.503   2.851   1.655  H051  Y1W  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y1W  F01  C02   SING  N  N   1  
Y1W  C34  C02   DOUB  Y  N   2  
Y1W  C34  N33   SING  Y  N   3  
Y1W  C02  C03   SING  Y  N   4  
Y1W  O05  C04   SING  N  N   5  
Y1W  N33  C32   DOUB  Y  N   6  
Y1W  C03  C04   SING  N  N   7  
Y1W  C03  C25   DOUB  Y  N   8  
Y1W  C04  C06   SING  N  N   9  
Y1W  O08  C09   SING  N  N  10  
Y1W  O08  C07   SING  N  N  11  
Y1W  C09  C10   SING  N  N  12  
Y1W  O16  C17   SING  N  N  13  
Y1W  O16  C15   SING  N  N  14  
Y1W  C17  C18   SING  N  N  15  
Y1W  C06  C07   SING  N  N  16  
Y1W  C32  C25   SING  Y  N  17  
Y1W  C32  C31   SING  Y  N  18  
Y1W  C25  C26   SING  Y  N  19  
Y1W  C07  O24   SING  N  N  20  
Y1W  C18  O19   SING  N  N  21  
Y1W  C10  N11   SING  N  N  22  
Y1W  C10  C23   SING  N  N  23  
Y1W  C15  C14   DOUB  Y  N  24  
Y1W  C15  C20   SING  Y  N  25  
Y1W  N11  C12   SING  N  N  26  
Y1W  C14  C13   SING  Y  N  27  
Y1W  C31  C30   DOUB  Y  N  28  
Y1W  O24  C23   SING  N  N  29  
Y1W  C26  C27   DOUB  Y  N  30  
Y1W  O19  C20   SING  N  N  31  
Y1W  C20  C21   DOUB  Y  N  32  
Y1W  C13  C12   SING  N  N  33  
Y1W  C13  C22   DOUB  Y  N  34  
Y1W  C30  C27   SING  Y  N  35  
Y1W  C27  O28   SING  N  N  36  
Y1W  C21  C22   SING  Y  N  37  
Y1W  O28  C29   SING  N  N  38  
Y1W  C04  H041  SING  N  N  39  
Y1W  C06  H062  SING  N  N  40  
Y1W  C06  H061  SING  N  N  41  
Y1W  C07  H071  SING  N  N  42  
Y1W  C09  H091  SING  N  N  43  
Y1W  C09  H092  SING  N  N  44  
Y1W  C10  H101  SING  N  N  45  
Y1W  C12  H121  SING  N  N  46  
Y1W  C12  H122  SING  N  N  47  
Y1W  C14  H141  SING  N  N  48  
Y1W  C17  H171  SING  N  N  49  
Y1W  C17  H172  SING  N  N  50  
Y1W  C18  H182  SING  N  N  51  
Y1W  C18  H181  SING  N  N  52  
Y1W  C21  H211  SING  N  N  53  
Y1W  C22  H221  SING  N  N  54  
Y1W  C23  H231  SING  N  N  55  
Y1W  C23  H232  SING  N  N  56  
Y1W  C26  H261  SING  N  N  57  
Y1W  C29  H291  SING  N  N  58  
Y1W  C29  H292  SING  N  N  59  
Y1W  C29  H293  SING  N  N  60  
Y1W  C30  H301  SING  N  N  61  
Y1W  C31  H311  SING  N  N  62  
Y1W  C34  H341  SING  N  N  63  
Y1W  N11  H111  SING  N  N  64  
Y1W  O05  H051  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y1W  SMILES            ACDLabs               12.01  "OC(CC1OCC(CO1)NCc1ccc2OCCOc2c1)c1c2cc(OC)ccc2ncc1F"  
Y1W  InChI             InChI                 1.03   "InChI=1S/C25H27FN2O6/c1-30-17-3-4-20-18(9-17)25(19(26)12-28-20)21(29)10-24-33-13-16(14-34-24)27-11-15-2-5-22-23(8-15)32-7-6-31-22/h2-5,8-9,12,16,21,24,27,29H,6-7,10-11,13-14H2,1H3/t16-,21-,24-/m0/s1"  
Y1W  InChIKey          InChI                 1.03   OWUGLCKBNARAPP-SWDVRCMSSA-N  
Y1W  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc2ncc(F)c([C@@H](O)C[C@@H]3OC[C@H](CO3)NCc4ccc5OCCOc5c4)c2c1"  
Y1W  SMILES            CACTVS                3.385  "COc1ccc2ncc(F)c([CH](O)C[CH]3OC[CH](CO3)NCc4ccc5OCCOc5c4)c2c1"  
Y1W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccc2c(c1)c(c(cn2)F)[C@H](CC3OCC(CO3)NCc4ccc5c(c4)OCCO5)O"  
Y1W  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccc2c(c1)c(c(cn2)F)C(CC3OCC(CO3)NCc4ccc5c(c4)OCCO5)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y1W  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S)-2-[(2r,5S)-5-{[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]amino}-1,3-dioxan-2-yl]-1-(3-fluoro-6-methoxyquinolin-4-yl)ethan-1-ol"  
Y1W  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{S})-2-[5-(2,3-dihydro-1,4-benzodioxin-6-ylmethylamino)-1,3-dioxan-2-yl]-1-(3-fluoranyl-6-methoxy-quinolin-4-yl)ethanol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y1W  "Create component"  2021-05-26  RCSB  
Y1W  "Initial release"   2021-10-20  RCSB  
##
