data_Y0W
# 
_chem_comp.id                                    Y0W 
_chem_comp.name                                  "2-[(3S)-pyrrolidin-3-yl]-5-(trifluoromethyl)-1H-benzimidazole" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H12 F3 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-14 
_chem_comp.pdbx_modified_date                    2024-02-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        255.239 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y0W 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GRN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y0W C10 C1  C 0 1 Y N N N N N 17.092 15.827 0.006  -1.997 0.288  0.214  C10 Y0W 1  
Y0W C13 C2  C 0 1 N N N N N N 18.632 18.567 -0.244 -5.504 0.220  -0.914 C13 Y0W 2  
Y0W C15 C3  C 0 1 N N N N N N 16.517 17.748 -1.181 -4.272 -0.449 0.991  C15 Y0W 3  
Y0W C17 C4  C 0 1 Y N N N N N 16.972 13.640 0.287  0.172  0.421  0.155  C17 Y0W 4  
Y0W C02 C5  C 0 1 N N N N N N 17.093 9.850  0.591  3.938  0.254  -0.013 C02 Y0W 5  
Y0W C05 C6  C 0 1 Y N N N N N 17.501 11.251 0.235  2.487  -0.152 -0.025 C05 Y0W 6  
Y0W C06 C7  C 0 1 Y N N N N N 18.704 11.535 -0.472 2.148  -1.482 -0.229 C06 Y0W 7  
Y0W C07 C8  C 0 1 Y N N N N N 19.045 12.866 -0.789 0.826  -1.872 -0.246 C07 Y0W 8  
Y0W C08 C9  C 0 1 Y N N N N N 18.157 13.934 -0.399 -0.172 -0.925 -0.055 C08 Y0W 9  
Y0W C11 C10 C 0 1 N N S N N N 16.683 17.332 0.081  -3.446 0.684  0.333  C11 Y0W 10 
Y0W C12 C11 C 0 1 N N N N N N 17.743 18.346 0.724  -4.093 0.817  -1.065 C12 Y0W 11 
Y0W C18 C12 C 0 1 Y N N N N N 16.628 12.298 0.607  1.519  0.793  0.165  C18 Y0W 12 
Y0W F01 F1  F 0 1 N N N N N N 15.963 9.605  -0.092 4.668  -0.599 -0.848 F01 Y0W 13 
Y0W F03 F2  F 0 1 N N N N N N 18.070 8.943  0.261  4.058  1.570  -0.472 F03 Y0W 14 
Y0W F04 F3  F 0 1 N N N N N N 16.832 9.721  1.915  4.436  0.168  1.291  F04 Y0W 15 
Y0W N09 N1  N 0 1 Y N N N N N 18.212 15.308 -0.562 -1.551 -0.977 -0.014 N09 Y0W 16 
Y0W N14 N2  N 0 1 N N N N N N 17.923 18.247 -1.590 -5.650 -0.195 0.498  N14 Y0W 17 
Y0W N16 N3  N 0 1 Y N N N N N 16.337 14.838 0.520  -0.990 1.106  0.310  N16 Y0W 18 
Y0W H1  H1  H 0 1 N N N N N N 19.506 17.912 -0.112 -6.254 0.973  -1.159 H1  Y0W 19 
Y0W H2  H2  H 0 1 N N N N N N 18.956 19.618 -0.228 -5.615 -0.642 -1.571 H2  Y0W 20 
Y0W H3  H3  H 0 1 N N N N N N 15.781 18.564 -1.232 -3.919 -1.426 0.658  H3  Y0W 21 
Y0W H4  H4  H 0 1 N N N N N N 16.191 16.920 -1.827 -4.229 -0.376 2.077  H4  Y0W 22 
Y0W H5  H5  H 0 1 N N N N N N 19.358 10.728 -0.767 2.926  -2.217 -0.378 H5  Y0W 23 
Y0W H6  H6  H 0 1 N N N N N N 19.961 13.084 -1.318 0.567  -2.908 -0.405 H6  Y0W 24 
Y0W H7  H7  H 0 1 N N N N N N 15.749 17.409 0.658  -3.546 1.612  0.896  H7  Y0W 25 
Y0W H8  H8  H 0 1 N N N N N N 18.229 17.894 1.601  -3.521 0.253  -1.802 H8  Y0W 26 
Y0W H9  H9  H 0 1 N N N N N N 17.251 19.284 1.020  -4.154 1.866  -1.355 H9  Y0W 27 
Y0W H10 H10 H 0 1 N N N N N N 15.708 12.081 1.129  1.794  1.825  0.322  H10 Y0W 28 
Y0W H11 H11 H 0 1 N N N N N N 18.941 15.823 -1.014 -2.100 -1.769 -0.127 H11 Y0W 29 
Y0W H12 H12 H 0 1 N N N N N N 18.418 17.536 -2.090 -6.220 -1.024 0.575  H12 Y0W 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y0W N14 C15 SING N N 1  
Y0W N14 C13 SING N N 2  
Y0W C15 C11 SING N N 3  
Y0W C07 C06 DOUB Y N 4  
Y0W C07 C08 SING Y N 5  
Y0W N09 C08 SING Y N 6  
Y0W N09 C10 SING Y N 7  
Y0W C06 C05 SING Y N 8  
Y0W C08 C17 DOUB Y N 9  
Y0W C13 C12 SING N N 10 
Y0W F01 C02 SING N N 11 
Y0W C10 C11 SING N N 12 
Y0W C10 N16 DOUB Y N 13 
Y0W C11 C12 SING N N 14 
Y0W C05 C02 SING N N 15 
Y0W C05 C18 DOUB Y N 16 
Y0W F03 C02 SING N N 17 
Y0W C17 N16 SING Y N 18 
Y0W C17 C18 SING Y N 19 
Y0W C02 F04 SING N N 20 
Y0W C13 H1  SING N N 21 
Y0W C13 H2  SING N N 22 
Y0W C15 H3  SING N N 23 
Y0W C15 H4  SING N N 24 
Y0W C06 H5  SING N N 25 
Y0W C07 H6  SING N N 26 
Y0W C11 H7  SING N N 27 
Y0W C12 H8  SING N N 28 
Y0W C12 H9  SING N N 29 
Y0W C18 H10 SING N N 30 
Y0W N09 H11 SING N N 31 
Y0W N14 H12 SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y0W SMILES           ACDLabs              12.01 "FC(F)(F)c1cc2nc([NH]c2cc1)C1CCNC1"                                                                                
Y0W InChI            InChI                1.06  "InChI=1S/C12H12F3N3/c13-12(14,15)8-1-2-9-10(5-8)18-11(17-9)7-3-4-16-6-7/h1-2,5,7,16H,3-4,6H2,(H,17,18)/t7-/m0/s1" 
Y0W InChIKey         InChI                1.06  KSJCWHAZRPOOBL-ZETCQYMHSA-N                                                                                        
Y0W SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)c1ccc2[nH]c(nc2c1)[C@H]3CCNC3"                                                                            
Y0W SMILES           CACTVS               3.385 "FC(F)(F)c1ccc2[nH]c(nc2c1)[CH]3CCNC3"                                                                             
Y0W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(F)(F)F)nc([nH]2)[C@H]3CCNC3"                                                                          
Y0W SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(F)(F)F)nc([nH]2)C3CCNC3"                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y0W "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(3S)-pyrrolidin-3-yl]-5-(trifluoromethyl)-1H-benzimidazole"       
Y0W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(3~{S})-pyrrolidin-3-yl]-5-(trifluoromethyl)-1~{H}-benzimidazole" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y0W "Create component" 2023-11-14 RCSB 
Y0W "Initial release"  2024-02-14 RCSB 
# 
