data_XBW
# 
_chem_comp.id                                    XBW 
_chem_comp.name                                  "~{N}-(phenylmethyl)pyridine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H12 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        212.247 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XBW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P8F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XBW C1  C1  C 0 1 Y N N N N N 29.912 -10.827 3.773 -4.718 0.060  -0.008 C1  XBW 1  
XBW C13 C2  C 0 1 Y N N N N N 22.451 -14.934 4.079 4.223  0.714  -1.198 C13 XBW 2  
XBW C14 C3  C 0 1 Y N N N N N 23.342 -15.930 3.736 4.791  1.108  -0.001 C14 XBW 3  
XBW C15 C4  C 0 1 Y N N N N N 24.545 -15.594 3.138 4.226  0.711  1.196  C15 XBW 4  
XBW C16 C5  C 0 1 Y N N N N N 24.853 -14.255 2.883 3.092  -0.080 1.196  C16 XBW 5  
XBW C2  C6  C 0 1 Y N N N N N 30.503 -9.679  3.325 -4.530 1.433  -0.001 C2  XBW 6  
XBW C6  C7  C 0 1 Y N N N N N 28.534 -11.053 3.576 -3.600 -0.760 -0.003 C6  XBW 7  
XBW C7  C8  C 0 1 N N N N N N 26.250 -10.276 2.724 -1.130 -1.041 0.002  C7  XBW 8  
XBW C3  C9  C 0 1 Y N N N N N 29.693 -8.796  2.652 -3.241 1.943  0.006  C3  XBW 9  
XBW N4  N1  N 0 1 Y N N N N N 28.339 -8.960  2.467 -2.198 1.142  0.005  N4  XBW 10 
XBW C5  C10 C 0 1 Y N N N N N 27.765 -10.084 2.937 -2.334 -0.179 0.004  C5  XBW 11 
XBW N8  N2  N 0 1 N N N N N N 25.709 -11.414 3.196 0.098  -0.484 0.001  N8  XBW 12 
XBW O9  O1  O 0 1 N N N N N N 25.635 -9.634  1.858 -1.248 -2.250 0.001  O9  XBW 13 
XBW C10 C11 C 0 1 N N N N N N 24.305 -11.774 2.966 1.289  -1.337 -0.000 C10 XBW 14 
XBW C11 C12 C 0 1 Y N N N N N 23.968 -13.236 3.230 2.524  -0.475 -0.001 C11 XBW 15 
XBW C12 C13 C 0 1 Y N N N N N 22.767 -13.595 3.844 3.087  -0.073 -1.198 C12 XBW 16 
XBW H17 H1  H 0 1 N N N N N N 30.507 -11.570 4.284 -5.712 -0.362 -0.014 H17 XBW 17 
XBW H25 H2  H 0 1 N N N N N N 21.505 -15.192 4.531 4.665  1.024  -2.134 H25 XBW 18 
XBW H26 H3  H 0 1 N N N N N N 23.103 -16.965 3.933 5.677  1.727  -0.002 H26 XBW 19 
XBW H27 H4  H 0 1 N N N N N N 25.247 -16.369 2.868 4.670  1.019  2.131  H27 XBW 20 
XBW H28 H5  H 0 1 N N N N N N 25.791 -14.006 2.410 2.651  -0.391 2.132  H28 XBW 21 
XBW H18 H6  H 0 1 N N N N N N 31.551 -9.477  3.491 -5.380 2.099  -0.000 H18 XBW 22 
XBW H20 H7  H 0 1 N N N N N N 28.079 -11.971 3.918 -3.709 -1.834 -0.004 H20 XBW 23 
XBW H19 H8  H 0 1 N N N N N N 30.152 -7.910  2.239 -3.092 3.012  0.012  H19 XBW 24 
XBW H21 H9  H 0 1 N N N N N N 26.285 -12.038 3.723 0.192  0.481  0.002  H21 XBW 25 
XBW H22 H10 H 0 1 N N N N N N 23.680 -11.154 3.626 1.286  -1.967 0.889  H22 XBW 26 
XBW H23 H11 H 0 1 N N N N N N 24.062 -11.551 1.917 1.284  -1.966 -0.891 H23 XBW 27 
XBW H24 H12 H 0 1 N N N N N N 22.071 -12.825 4.142 2.643  -0.381 -2.133 H24 XBW 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XBW O9  C7  DOUB N N 1  
XBW N4  C3  DOUB Y N 2  
XBW N4  C5  SING Y N 3  
XBW C3  C2  SING Y N 4  
XBW C7  C5  SING N N 5  
XBW C7  N8  SING N N 6  
XBW C16 C15 DOUB Y N 7  
XBW C16 C11 SING Y N 8  
XBW C5  C6  DOUB Y N 9  
XBW C10 N8  SING N N 10 
XBW C10 C11 SING N N 11 
XBW C15 C14 SING Y N 12 
XBW C11 C12 DOUB Y N 13 
XBW C2  C1  DOUB Y N 14 
XBW C6  C1  SING Y N 15 
XBW C14 C13 DOUB Y N 16 
XBW C12 C13 SING Y N 17 
XBW C1  H17 SING N N 18 
XBW C13 H25 SING N N 19 
XBW C14 H26 SING N N 20 
XBW C15 H27 SING N N 21 
XBW C16 H28 SING N N 22 
XBW C2  H18 SING N N 23 
XBW C6  H20 SING N N 24 
XBW C3  H19 SING N N 25 
XBW N8  H21 SING N N 26 
XBW C10 H22 SING N N 27 
XBW C10 H23 SING N N 28 
XBW C12 H24 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XBW InChI            InChI                1.06  "InChI=1S/C13H12N2O/c16-13(12-8-4-5-9-14-12)15-10-11-6-2-1-3-7-11/h1-9H,10H2,(H,15,16)" 
XBW InChIKey         InChI                1.06  NNIFYECULHSHBH-UHFFFAOYSA-N                                                             
XBW SMILES_CANONICAL CACTVS               3.385 "O=C(NCc1ccccc1)c2ccccn2"                                                               
XBW SMILES           CACTVS               3.385 "O=C(NCc1ccccc1)c2ccccn2"                                                               
XBW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)c2ccccn2"                                                             
XBW SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)c2ccccn2"                                                             
# 
_pdbx_chem_comp_identifier.comp_id           XBW 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-(phenylmethyl)pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XBW "Create component" 2023-06-06 PDBE 
XBW "Initial release"  2024-06-12 RCSB 
XBW "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XBW 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
