data_V9W
#

_chem_comp.id                                   V9W
_chem_comp.name                                 "(3~{R})-3-[[5-[(4,4-dimethylpiperidin-1-yl)methyl]-1~{H}-benzimidazol-2-yl]methyl]-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-ol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C32 H41 N7 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-03
_chem_comp.pdbx_modified_date                   2021-10-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       539.714
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V9W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OEI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V9W  C10  C1   C  0  1  Y  N  N  45.636  -30.794  23.053    4.930  -1.688   1.866  C10  V9W   1  
V9W  C13  C2   C  0  1  Y  N  N  44.769  -31.516  24.023    3.763  -1.553   1.127  C13  V9W   2  
V9W  C15  C3   C  0  1  Y  N  N  43.908  -32.872  25.653    1.821  -1.682   0.084  C15  V9W   3  
V9W  C17  C4   C  0  1  N  N  R  43.681  -35.383  26.345   -0.603  -1.184  -0.069  C17  V9W   4  
V9W  C20  C5   C  0  1  N  N  N  43.516  -37.727  24.467   -3.053  -0.535   1.333  C20  V9W   5  
V9W  C21  C6   C  0  1  N  N  N  42.372  -35.871  25.666   -1.968  -1.761  -0.454  C21  V9W   6  
V9W  C01  C7   C  0  1  N  N  N  41.928  -23.929  24.552   11.071   0.828  -2.423  C01  V9W   7  
V9W  C02  C8   C  0  1  N  N  N  42.561  -24.828  23.458   10.228   1.068  -1.170  C02  V9W   8  
V9W  C03  C9   C  0  1  N  N  N  43.737  -24.142  22.746   11.148   1.236   0.041  C03  V9W   9  
V9W  C04  C10  C  0  1  N  N  N  43.098  -26.057  24.130    9.388   2.335  -1.353  C04  V9W  10  
V9W  C05  C11  C  0  1  N  N  N  43.559  -27.078  23.096    8.502   2.536  -0.122  C05  V9W  11  
V9W  C07  C12  C  0  1  N  N  N  42.886  -28.512  21.280    6.667   1.585   1.140  C07  V9W  12  
V9W  C08  C13  C  0  1  Y  N  N  43.585  -29.585  22.205    5.638   0.484   1.130  C08  V9W  13  
V9W  C09  C14  C  0  1  Y  N  N  45.036  -29.836  22.156    5.861  -0.671   1.864  C09  V9W  14  
V9W  C11  C15  C  0  1  Y  N  N  42.781  -30.290  23.151    4.495   0.635   0.396  C11  V9W  15  
V9W  C12  C16  C  0  1  Y  N  N  43.396  -31.267  24.060    3.538  -0.383   0.383  C12  V9W  16  
V9W  C16  C17  C  0  1  N  N  N  43.773  -33.919  26.800    0.493  -2.198  -0.406  C16  V9W  17  
V9W  C18  C18  C  0  1  N  N  N  44.816  -35.699  25.394   -0.583  -0.891   1.433  C18  V9W  18  
V9W  C19  C19  C  0  1  N  N  N  44.880  -37.154  24.923   -1.720   0.078   1.771  C19  V9W  19  
V9W  C23  C20  C  0  1  Y  N  N  41.319  -38.360  25.848   -4.258  -1.231  -0.564  C23  V9W  20  
V9W  C25  C21  C  0  1  Y  N  N  39.962  -39.318  27.577   -5.544  -2.814  -1.636  C25  V9W  21  
V9W  C27  C22  C  0  1  Y  N  N  39.823  -40.303  25.342   -6.615  -0.942  -0.824  C27  V9W  22  
V9W  C29  C23  C  0  1  N  N  N  39.890  -41.948  23.076   -7.734   1.071   0.067  C29  V9W  23  
V9W  C30  C24  C  0  1  Y  N  N  41.481  -42.621  23.127   -9.122   1.654   0.137  C30  V9W  24  
V9W  C31  C25  C  0  1  Y  N  N  41.996  -43.197  24.345   -9.942   1.359   1.210  C31  V9W  25  
V9W  C32  C26  C  0  1  Y  N  N  43.331  -43.767  24.412  -11.215   1.893   1.275  C32  V9W  26  
V9W  C33  C27  C  0  1  Y  N  N  44.170  -43.768  23.246  -11.668   2.724   0.267  C33  V9W  27  
V9W  C34  C28  C  0  1  Y  N  N  43.662  -43.195  22.022  -10.848   3.020  -0.806  C34  V9W  28  
V9W  C35  C29  C  0  1  Y  N  N  42.331  -42.627  21.960   -9.573   2.489  -0.868  C35  V9W  29  
V9W  C36  C30  C  0  1  Y  N  N  40.804  -39.311  24.921   -5.398  -0.462  -0.350  C36  V9W  30  
V9W  C39  C31  C  0  1  N  N  N  41.960  -26.260  21.400    8.413   0.146   0.276  C39  V9W  31  
V9W  C40  C32  C  0  1  N  N  N  41.492  -25.193  22.414    9.297  -0.126  -0.943  C40  V9W  32  
V9W  N06  N1   N  0  1  N  N  N  42.409  -27.430  22.190    7.628   1.368   0.050  N06  V9W  33  
V9W  N14  N2   N  0  1  Y  N  N  45.063  -32.516  25.022    2.659  -2.356   0.917  N14  V9W  34  
V9W  N22  N3   N  0  1  N  N  N  42.342  -37.351  25.361   -3.022  -0.797  -0.111  N22  V9W  35  
V9W  N24  N4   N  0  1  Y  N  N  40.902  -38.369  27.168   -4.373  -2.392  -1.207  N24  V9W  36  
V9W  N26  N5   N  0  1  Y  N  N  39.435  -40.268  26.679   -6.646  -2.116  -1.452  N26  V9W  37  
V9W  N28  N6   N  0  1  N  N  N  39.263  -41.328  24.374   -7.779  -0.214  -0.636  N28  V9W  38  
V9W  N38  N7   N  0  1  Y  N  N  42.855  -32.118  25.080    2.334  -0.528  -0.229  N38  V9W  39  
V9W  O37  O1   O  0  1  N  N  N  43.860  -36.222  27.492   -0.374   0.025  -0.796  O37  V9W  40  
V9W  H1   H1   H  0  1  N  N  N  46.699  -30.984  23.021    5.106  -2.584   2.443  H1   V9W  41  
V9W  H2   H2   H  0  1  N  N  N  43.309  -37.355  23.453   -3.215  -1.471   1.869  H2   V9W  42  
V9W  H3   H3   H  0  1  N  N  N  43.594  -38.824  24.446   -3.863   0.158   1.559  H3   V9W  43  
V9W  H4   H4   H  0  1  N  N  N  41.530  -35.640  26.336   -1.990  -1.958  -1.525  H4   V9W  44  
V9W  H5   H5   H  0  1  N  N  N  42.249  -35.322  24.721   -2.135  -2.691   0.090  H5   V9W  45  
V9W  H6   H6   H  0  1  N  N  N  41.094  -24.464  25.030   11.668  -0.075  -2.293  H6   V9W  46  
V9W  H7   H7   H  0  1  N  N  N  42.687  -23.683  25.309   10.415   0.709  -3.286  H7   V9W  47  
V9W  H8   H8   H  0  1  N  N  N  41.554  -23.002  24.093   11.733   1.679  -2.585  H8   V9W  48  
V9W  H9   H9   H  0  1  N  N  N  44.149  -24.818  21.983   11.809   2.087  -0.120  H9   V9W  49  
V9W  H10  H10  H  0  1  N  N  N  43.385  -23.217  22.265   10.546   1.406   0.934  H10  V9W  50  
V9W  H11  H11  H  0  1  N  N  N  44.519  -23.899  23.481   11.744   0.333   0.172  H11  V9W  51  
V9W  H12  H12  H  0  1  N  N  N  43.950  -25.777  24.766   10.047   3.195  -1.472  H12  V9W  52  
V9W  H13  H13  H  0  1  N  N  N  42.308  -26.504  24.751    8.761   2.231  -2.239  H13  V9W  53  
V9W  H14  H14  H  0  1  N  N  N  44.378  -26.651  22.499    9.129   2.654   0.762  H14  V9W  54  
V9W  H15  H15  H  0  1  N  N  N  43.913  -27.985  23.609    7.891   3.429  -0.255  H15  V9W  55  
V9W  H16  H16  H  0  1  N  N  N  43.605  -28.109  20.552    6.173   2.547   1.002  H16  V9W  56  
V9W  H17  H17  H  0  1  N  N  N  42.037  -28.963  20.746    7.194   1.581   2.095  H17  V9W  57  
V9W  H18  H18  H  0  1  N  N  N  45.652  -29.302  21.447    6.769  -0.774   2.439  H18  V9W  58  
V9W  H19  H19  H  0  1  N  N  N  41.718  -30.105  23.199    4.332   1.538  -0.173  H19  V9W  59  
V9W  H20  H20  H  0  1  N  N  N  44.652  -33.821  27.455    0.535  -2.342  -1.486  H20  V9W  60  
V9W  H21  H21  H  0  1  N  N  N  42.863  -33.683  27.370    0.270  -3.148   0.079  H21  V9W  61  
V9W  H22  H22  H  0  1  N  N  N  44.706  -35.058  24.507   -0.719  -1.819   1.988  H22  V9W  62  
V9W  H23  H23  H  0  1  N  N  N  45.763  -35.463  25.902    0.371  -0.440   1.704  H23  V9W  63  
V9W  H24  H24  H  0  1  N  N  N  45.254  -37.771  25.753   -1.564   1.020   1.247  H24  V9W  64  
V9W  H25  H25  H  0  1  N  N  N  45.581  -37.214  24.077   -1.738   0.257   2.846  H25  V9W  65  
V9W  H26  H26  H  0  1  N  N  N  39.631  -39.324  28.605   -5.603  -3.760  -2.153  H26  V9W  66  
V9W  H27  H27  H  0  1  N  N  N  39.214  -42.752  22.749   -7.079   1.756  -0.471  H27  V9W  67  
V9W  H28  H28  H  0  1  N  N  N  39.906  -41.151  22.318   -7.352   0.920   1.077  H28  V9W  68  
V9W  H29  H29  H  0  1  N  N  N  41.375  -43.205  25.228   -9.588   0.710   1.998  H29  V9W  69  
V9W  H30  H30  H  0  1  N  N  N  43.692  -44.190  25.338  -11.856   1.662   2.113  H30  V9W  70  
V9W  H31  H31  H  0  1  N  N  N  45.163  -44.190  23.284  -12.663   3.141   0.317  H31  V9W  71  
V9W  H32  H32  H  0  1  N  N  N  44.284  -43.190  21.139  -11.202   3.668  -1.593  H32  V9W  72  
V9W  H33  H33  H  0  1  N  N  N  41.972  -42.205  21.033   -8.931   2.723  -1.704  H33  V9W  73  
V9W  H34  H34  H  0  1  N  N  N  41.144  -39.297  23.896   -5.339   0.482   0.171  H34  V9W  74  
V9W  H35  H35  H  0  1  N  N  N  41.128  -26.545  20.739    7.739  -0.696   0.432  H35  V9W  75  
V9W  H36  H36  H  0  1  N  N  N  42.792  -25.869  20.795    9.041   0.276   1.158  H36  V9W  76  
V9W  H37  H37  H  0  1  N  N  N  40.607  -25.579  22.942    8.669  -0.270  -1.823  H37  V9W  77  
V9W  H38  H38  H  0  1  N  N  N  41.221  -24.282  21.860    9.891  -1.023  -0.769  H38  V9W  78  
V9W  H40  H40  H  0  1  N  N  N  45.970  -32.888  25.220    2.509  -3.237   1.294  H40  V9W  79  
V9W  H41  H41  H  0  1  N  N  N  39.063  -42.121  24.949   -8.624  -0.555  -0.969  H41  V9W  80  
V9W  H43  H43  H  0  1  N  N  N  44.652  -35.968  27.950    0.474   0.446  -0.601  H43  V9W  81  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V9W  C10  C13  DOUB  Y  N   1  
V9W  C10  C09  SING  Y  N   2  
V9W  C13  C12  SING  Y  N   3  
V9W  C13  N14  SING  Y  N   4  
V9W  C15  C16  SING  N  N   5  
V9W  C15  N14  SING  Y  N   6  
V9W  C15  N38  DOUB  Y  N   7  
V9W  C17  C21  SING  N  N   8  
V9W  C17  C16  SING  N  N   9  
V9W  C17  C18  SING  N  N  10  
V9W  C17  O37  SING  N  N  11  
V9W  C20  C19  SING  N  N  12  
V9W  C20  N22  SING  N  N  13  
V9W  C21  N22  SING  N  N  14  
V9W  C01  C02  SING  N  N  15  
V9W  C02  C03  SING  N  N  16  
V9W  C02  C04  SING  N  N  17  
V9W  C02  C40  SING  N  N  18  
V9W  C04  C05  SING  N  N  19  
V9W  C05  N06  SING  N  N  20  
V9W  C07  C08  SING  N  N  21  
V9W  C07  N06  SING  N  N  22  
V9W  C08  C09  DOUB  Y  N  23  
V9W  C08  C11  SING  Y  N  24  
V9W  C11  C12  DOUB  Y  N  25  
V9W  C12  N38  SING  Y  N  26  
V9W  C18  C19  SING  N  N  27  
V9W  C23  C36  DOUB  Y  N  28  
V9W  C23  N22  SING  N  N  29  
V9W  C23  N24  SING  Y  N  30  
V9W  C25  N24  DOUB  Y  N  31  
V9W  C25  N26  SING  Y  N  32  
V9W  C27  C36  SING  Y  N  33  
V9W  C27  N26  DOUB  Y  N  34  
V9W  C27  N28  SING  N  N  35  
V9W  C29  N28  SING  N  N  36  
V9W  C30  C31  DOUB  Y  N  37  
V9W  C30  C35  SING  Y  N  38  
V9W  C31  C32  SING  Y  N  39  
V9W  C32  C33  DOUB  Y  N  40  
V9W  C33  C34  SING  Y  N  41  
V9W  C34  C35  DOUB  Y  N  42  
V9W  C39  C40  SING  N  N  43  
V9W  C39  N06  SING  N  N  44  
V9W  C29  C30  SING  N  N  45  
V9W  C10  H1   SING  N  N  46  
V9W  C20  H2   SING  N  N  47  
V9W  C20  H3   SING  N  N  48  
V9W  C21  H4   SING  N  N  49  
V9W  C21  H5   SING  N  N  50  
V9W  C01  H6   SING  N  N  51  
V9W  C01  H7   SING  N  N  52  
V9W  C01  H8   SING  N  N  53  
V9W  C03  H9   SING  N  N  54  
V9W  C03  H10  SING  N  N  55  
V9W  C03  H11  SING  N  N  56  
V9W  C04  H12  SING  N  N  57  
V9W  C04  H13  SING  N  N  58  
V9W  C05  H14  SING  N  N  59  
V9W  C05  H15  SING  N  N  60  
V9W  C07  H16  SING  N  N  61  
V9W  C07  H17  SING  N  N  62  
V9W  C09  H18  SING  N  N  63  
V9W  C11  H19  SING  N  N  64  
V9W  C16  H20  SING  N  N  65  
V9W  C16  H21  SING  N  N  66  
V9W  C18  H22  SING  N  N  67  
V9W  C18  H23  SING  N  N  68  
V9W  C19  H24  SING  N  N  69  
V9W  C19  H25  SING  N  N  70  
V9W  C25  H26  SING  N  N  71  
V9W  C29  H27  SING  N  N  72  
V9W  C29  H28  SING  N  N  73  
V9W  C31  H29  SING  N  N  74  
V9W  C32  H30  SING  N  N  75  
V9W  C33  H31  SING  N  N  76  
V9W  C34  H32  SING  N  N  77  
V9W  C35  H33  SING  N  N  78  
V9W  C36  H34  SING  N  N  79  
V9W  C39  H35  SING  N  N  80  
V9W  C39  H36  SING  N  N  81  
V9W  C40  H37  SING  N  N  82  
V9W  C40  H38  SING  N  N  83  
V9W  N14  H40  SING  N  N  84  
V9W  N28  H41  SING  N  N  85  
V9W  O37  H43  SING  N  N  86  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V9W  InChI             InChI                 1.03   "InChI=1S/C32H41N7O/c1-31(2)12-15-38(16-13-31)21-25-9-10-26-27(17-25)37-29(36-26)19-32(40)11-6-14-39(22-32)30-18-28(34-23-35-30)33-20-24-7-4-3-5-8-24/h3-5,7-10,17-18,23,40H,6,11-16,19-22H2,1-2H3,(H,36,37)(H,33,34,35)/t32-/m1/s1"  
V9W  InChIKey          InChI                 1.03   YTMRIXJBQMOKPZ-JGCGQSQUSA-N  
V9W  SMILES_CANONICAL  CACTVS                3.385  "CC1(C)CCN(CC1)Cc2ccc3[nH]c(C[C@]4(O)CCCN(C4)c5cc(NCc6ccccc6)ncn5)nc3c2"  
V9W  SMILES            CACTVS                3.385  "CC1(C)CCN(CC1)Cc2ccc3[nH]c(C[C]4(O)CCCN(C4)c5cc(NCc6ccccc6)ncn5)nc3c2"  
V9W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1(CCN(CC1)Cc2ccc3c(c2)nc([nH]3)C[C@@]4(CCCN(C4)c5cc(ncn5)NCc6ccccc6)O)C"  
V9W  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(CCN(CC1)Cc2ccc3c(c2)nc([nH]3)CC4(CCCN(C4)c5cc(ncn5)NCc6ccccc6)O)C"  
#
_pdbx_chem_comp_identifier.comp_id          V9W
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{R})-3-[[5-[(4,4-dimethylpiperidin-1-yl)methyl]-1~{H}-benzimidazol-2-yl]methyl]-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-ol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V9W  "Create component"  2021-05-03  PDBE  
V9W  "Initial release"   2021-10-20  RCSB  
##
