data_TDW
# 
_chem_comp.id                                    TDW 
_chem_comp.name                                  "2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[(1S)-1-oxidanylethyl]-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H23 N4 O8 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2013-02-08 
_chem_comp.pdbx_modified_date                    2013-11-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        469.367 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TDW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZHV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TDW S1     S1     S 0 1 Y N N -8.364  16.092 41.811 1.374  1.969  -0.970 S1     TDW 1  
TDW C2     C2     C 0 1 Y N N -9.213  15.115 40.829 2.774  1.661  -0.038 C2     TDW 2  
TDW N3     N3     N 1 1 Y N N -9.616  13.896 41.502 2.692  0.499  0.517  N3     TDW 3  
TDW C4     C4     C 0 1 Y N N -9.263  13.959 42.853 1.604  -0.205 0.280  C4     TDW 4  
TDW C5     C5     C 0 1 Y N N -8.543  15.120 43.159 0.718  0.397  -0.519 C5     TDW 5  
TDW C6     C6     C 0 1 N N N -8.009  15.464 44.559 -0.608 -0.169 -0.958 C6     TDW 6  
TDW C7     C7     C 0 1 N N N -6.503  15.600 44.505 -1.692 0.234  0.044  C7     TDW 7  
TDW O7     O7     O 0 1 N N N -5.882  15.574 45.819 -2.949 -0.303 -0.372 O7     TDW 8  
TDW PA     PA     P 0 1 N N N -4.275  15.767 45.980 -4.315 -0.075 0.449  PA     TDW 9  
TDW PB     PB     P 0 1 N N N -4.127  18.634 44.837 -7.141 -0.484 -0.344 PB     TDW 10 
TDW "N1'"  "N1'"  N 0 1 Y N N -8.932  9.245  41.375 5.510  -1.529 -1.544 "N1'"  TDW 11 
TDW O1A    O1A    O 0 1 N N N -3.443  14.584 45.655 -4.540 1.375  0.640  O1A    TDW 12 
TDW O1B    O1B    O 0 1 N N N -4.328  19.378 46.112 -7.796 -1.119 -1.670 O1B    TDW 13 
TDW "C2'"  "C2'"  C 0 1 Y N N -7.873  9.269  40.557 6.617  -1.972 -0.984 "C2'"  TDW 14 
TDW C27    C27    C 0 1 N N S -9.787  15.580 39.459 3.935  2.609  0.113  C27    TDW 15 
TDW O28    O28    O 0 1 N N N -9.535  14.794 38.299 4.283  3.144  -1.166 O28    TDW 16 
TDW C29    C29    C 0 1 N N N -11.261 15.923 39.577 3.544  3.750  1.054  C29    TDW 17 
TDW O2A    O2A    O 0 1 N N N -4.174  16.330 47.402 -4.204 -0.794 1.885  O2A    TDW 18 
TDW O2B    O2B    O 0 1 N N N -2.805  18.928 44.154 -7.760 -1.203 0.957  O2B    TDW 19 
TDW "N3'"  "N3'"  N 0 1 Y N N -7.503  10.301 39.791 6.855  -1.818 0.303  "N3'"  TDW 20 
TDW O3A    O3A    O 0 1 N N N -4.081  17.107 45.205 -5.547 -0.706 -0.373 O3A    TDW 21 
TDW O3B    O3B    O 0 1 N N N -5.310  18.679 43.854 -7.437 0.966  -0.294 O3B    TDW 22 
TDW "C4'"  "C4'"  C 0 1 Y N N -8.238  11.431 39.861 5.975  -1.202 1.087  "C4'"  TDW 23 
TDW "N4'"  "N4'"  N 0 1 N N N -7.806  12.474 39.144 6.228  -1.042 2.440  "N4'"  TDW 24 
TDW "C5'"  "C5'"  C 0 1 Y N N -9.380  11.512 40.713 4.791  -0.720 0.525  "C5'"  TDW 25 
TDW "C6'"  "C6'"  C 0 1 Y N N -9.656  10.371 41.429 4.584  -0.905 -0.828 "C6'"  TDW 26 
TDW "C7'"  "C7'"  C 0 1 N N N -10.269 12.723 40.883 3.764  -0.016 1.374  "C7'"  TDW 27 
TDW CM2    CM2    C 0 1 N N N -7.001  8.057  40.530 7.639  -2.675 -1.839 CM2    TDW 28 
TDW CM4    CM4    C 0 1 N N N -9.761  12.965 43.857 1.377  -1.576 0.863  CM4    TDW 29 
TDW H6     H6     H 0 1 N N N -8.451  16.413 44.897 -0.861 0.221  -1.944 H6     TDW 30 
TDW H6A    H6A    H 0 1 N N N -8.280  14.662 45.262 -0.542 -1.257 -1.003 H6A    TDW 31 
TDW H7     H7     H 0 1 N N N -6.097  14.769 43.909 -1.439 -0.156 1.030  H7     TDW 32 
TDW H7A    H7A    H 0 1 N N N -6.255  16.555 44.019 -1.758 1.321  0.089  H7A    TDW 33 
TDW HO1B   HO1B   H 0 0 N N N -5.190  19.777 46.114 -8.757 -1.022 -1.720 HO1B   TDW 34 
TDW H27    H27    H 0 1 N N N -9.293  16.545 39.274 4.790  2.074  0.527  H27    TDW 35 
TDW HO28   HO28   H 0 0 N N N -9.945  15.201 37.545 5.024  3.764  -1.145 HO28   TDW 36 
TDW H29    H29    H 0 1 N N N -11.642 16.248 38.598 4.384  4.436  1.163  H29    TDW 37 
TDW H29A   H29A   H 0 0 N N N -11.818 15.035 39.911 2.689  4.285  0.640  H29A   TDW 38 
TDW H29B   H29B   H 0 0 N N N -11.391 16.734 40.308 3.279  3.342  2.029  H29B   TDW 39 
TDW HO2A   HO2A   H 0 0 N N N -3.557  15.812 47.905 -4.056 -1.749 1.837  HO2A   TDW 40 
TDW HO2B   HO2B   H 0 0 N N N -2.954  19.088 43.230 -7.604 -2.156 0.991  HO2B   TDW 41 
TDW "HN4'" "HN4'" H 0 0 N N N -6.971  12.221 38.656 7.090  -1.297 2.805  "HN4'" TDW 42 
TDW HN4A   HN4A   H 0 0 N N N -8.509  12.739 38.485 5.544  -0.674 3.021  HN4A   TDW 43 
TDW "H6'"  "H6'"  H 0 1 N N N -10.517 10.383 42.081 3.681  -0.545 -1.297 "H6'"  TDW 44 
TDW "H7'"  "H7'"  H 0 1 N N N -11.122 12.434 41.515 4.236  0.812  1.903  "H7'"  TDW 45 
TDW "H7'A" "H7'A" H 0 0 N N N -10.634 13.021 39.889 3.346  -0.717 2.096  "H7'A" TDW 46 
TDW HM2    HM2    H 0 1 N N N -7.397  7.304  41.227 8.344  -1.945 -2.237 HM2    TDW 47 
TDW HM2A   HM2A   H 0 0 N N N -6.983  7.641  39.512 8.177  -3.406 -1.235 HM2A   TDW 48 
TDW HM2B   HM2B   H 0 0 N N N -5.980  8.333  40.831 7.137  -3.183 -2.662 HM2B   TDW 49 
TDW HM4    HM4    H 0 1 N N N -9.027  12.153 43.965 0.876  -1.483 1.827  HM4    TDW 50 
TDW HM4A   HM4A   H 0 0 N N N -9.902  13.463 44.828 0.754  -2.160 0.185  HM4A   TDW 51 
TDW HM4B   HM4B   H 0 0 N N N -10.721 12.549 43.516 2.335  -2.077 0.998  HM4B   TDW 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TDW C2    S1     SING Y N 1  
TDW S1    C5     SING Y N 2  
TDW C27   C2     SING N N 3  
TDW C2    N3     DOUB Y N 4  
TDW "C7'" N3     SING N N 5  
TDW N3    C4     SING Y N 6  
TDW C4    C5     DOUB Y N 7  
TDW C4    CM4    SING N N 8  
TDW C5    C6     SING N N 9  
TDW C7    C6     SING N N 10 
TDW C6    H6     SING N N 11 
TDW C6    H6A    SING N N 12 
TDW C7    O7     SING N N 13 
TDW C7    H7     SING N N 14 
TDW C7    H7A    SING N N 15 
TDW O7    PA     SING N N 16 
TDW O3A   PA     SING N N 17 
TDW O1A   PA     DOUB N N 18 
TDW PA    O2A    SING N N 19 
TDW O3B   PB     DOUB N N 20 
TDW O2B   PB     SING N N 21 
TDW PB    O3A    SING N N 22 
TDW PB    O1B    SING N N 23 
TDW "C2'" "N1'"  DOUB Y N 24 
TDW "N1'" "C6'"  SING Y N 25 
TDW O1B   HO1B   SING N N 26 
TDW "N3'" "C2'"  SING Y N 27 
TDW CM2   "C2'"  SING N N 28 
TDW O28   C27    SING N N 29 
TDW C27   C29    SING N N 30 
TDW C27   H27    SING N N 31 
TDW O28   HO28   SING N N 32 
TDW C29   H29    SING N N 33 
TDW C29   H29A   SING N N 34 
TDW C29   H29B   SING N N 35 
TDW O2A   HO2A   SING N N 36 
TDW O2B   HO2B   SING N N 37 
TDW "N3'" "C4'"  DOUB Y N 38 
TDW "N4'" "C4'"  SING N N 39 
TDW "C4'" "C5'"  SING Y N 40 
TDW "N4'" "HN4'" SING N N 41 
TDW "N4'" HN4A   SING N N 42 
TDW "C5'" "C7'"  SING N N 43 
TDW "C5'" "C6'"  DOUB Y N 44 
TDW "C6'" "H6'"  SING N N 45 
TDW "C7'" "H7'"  SING N N 46 
TDW "C7'" "H7'A" SING N N 47 
TDW CM2   HM2    SING N N 48 
TDW CM2   HM2A   SING N N 49 
TDW CM2   HM2B   SING N N 50 
TDW CM4   HM4    SING N N 51 
TDW CM4   HM4A   SING N N 52 
TDW CM4   HM4B   SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TDW SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OCCc1sc(C(O)C)n(c1C)Cc2cnc(nc2N)C"                                                                                                                                
TDW InChI            InChI                1.03  "InChI=1S/C14H24N4O8P2S/c1-8-12(4-5-25-28(23,24)26-27(20,21)22)29-14(9(2)19)18(8)7-11-6-16-10(3)17-13(11)15/h6,9,18-19H,4-5,7H2,1-3H3,(H,23,24)(H2,15,16,17)(H2,20,21,22)/t9-/m0/s1" 
TDW InChIKey         InChI                1.03  WHPLAPKWYDKPQH-VIFPVBQESA-N                                                                                                                                                          
TDW SMILES_CANONICAL CACTVS               3.370 "C[C@H](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N"                                                                                                                     
TDW SMILES           CACTVS               3.370 "C[CH](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N"                                                                                                                      
TDW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@H](C)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                         
TDW SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(C)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TDW "SYSTEMATIC NAME" ACDLabs              12.01 "2-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1S)-1-hydroxyethyl]-4-methyl-1,3lambda~5~-thiazol-5-yl}ethyl trihydrogen diphosphate"      
TDW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[(1S)-1-oxidanylethyl]-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TDW "Create component"   2013-02-08 EBI  
TDW "Other modification" 2013-02-22 EBI  
TDW "Initial release"    2013-11-13 RCSB 
# 
