data_R6W
#

_chem_comp.id                                   R6W
_chem_comp.name                                 "(3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C40 H40 N6 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-10
_chem_comp.pdbx_modified_date                   2020-11-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       668.783
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R6W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ACA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R6W  C4   C1   C  0  1  Y  N  N  46.209   5.415  82.198    5.728  -0.873   1.511  C4   R6W   1  
R6W  C5   C2   C  0  1  Y  N  N  47.178   5.295  83.191    6.585  -1.362   0.556  C5   R6W   2  
R6W  C6   C3   C  0  1  Y  N  N  48.101   6.303  83.403    7.470  -2.401   0.864  C6   R6W   3  
R6W  C7   C4   C  0  1  N  N  S  47.436   4.162  84.165    6.826  -1.012  -0.891  C7   R6W   4  
R6W  C15  C5   C  0  1  Y  N  N  48.651   2.629  82.384    8.580   0.962  -0.628  C15  R6W   5  
R6W  C17  C6   C  0  1  Y  N  N  49.494   0.675  81.172    9.649   3.127  -0.661  C17  R6W   6  
R6W  C20  C7   C  0  1  N  N  N  46.784   1.245  85.319    5.136   1.344  -2.000  C20  R6W   7  
R6W  C24  C8   C  0  1  N  N  N  47.956   0.055  88.735    1.874   1.330  -0.115  C24  R6W   8  
R6W  C26  C9   C  0  1  N  N  N  49.402  -1.694  89.919   -0.516   1.348   0.615  C26  R6W   9  
R6W  C28  C10  C  0  1  N  N  N  50.582  -3.602  91.098   -2.905   1.365   1.344  C28  R6W  10  
R6W  C1   C11  C  0  1  Y  N  N  48.056   7.467  82.641    7.476  -2.939   2.154  C1   R6W  11  
R6W  C2   C12  C  0  1  Y  N  N  47.090   7.604  81.658    6.614  -2.445   3.108  C2   R6W  12  
R6W  C3   C13  C  0  1  Y  N  N  46.168   6.579  81.435    5.742  -1.409   2.795  C3   R6W  13  
R6W  N8   N1   N  0  1  N  N  N  48.597   4.710  84.926    7.887  -1.912  -1.359  N8   R6W  14  
R6W  C9   C14  C  0  1  N  N  N  48.990   5.926  84.520    8.255  -2.711  -0.343  C9   R6W  15  
R6W  O10  O1   O  0  1  N  N  N  49.911   6.587  84.990    9.115  -3.569  -0.411  O10  R6W  16  
R6W  C11  C15  C  0  1  Y  N  N  47.835   2.837  83.556    7.273   0.422  -1.011  C11  R6W  17  
R6W  C12  C16  C  0  1  Y  N  N  47.566   1.606  84.078    6.550   1.447  -1.488  C12  R6W  18  
R6W  N13  N2   N  0  1  Y  N  N  48.090   0.630  83.265    7.287   2.599  -1.443  N13  R6W  19  
R6W  C14  C17  C  0  1  Y  N  N  48.789   1.235  82.234    8.534   2.337  -0.922  C14  R6W  20  
R6W  C16  C18  C  0  1  Y  N  N  49.230   3.465  81.426    9.736   0.405  -0.077  C16  R6W  21  
R6W  C18  C19  C  0  1  Y  N  N  50.087   1.531  80.254   10.782   2.556  -0.125  C18  R6W  22  
R6W  C19  C20  C  0  1  Y  N  N  49.949   2.912  80.375   10.821   1.200   0.169  C19  R6W  23  
R6W  N21  N3   N  0  1  N  N  N  47.712   0.790  86.368    4.206   1.314  -0.863  N21  R6W  24  
R6W  O22  O2   O  0  1  N  N  N  45.228   6.734  80.462    4.896  -0.927   3.740  O22  R6W  25  
R6W  C23  C21  C  0  1  N  N  N  47.022   0.270  87.553    2.811   1.362  -1.324  C23  R6W  26  
R6W  C25  C22  C  0  1  N  N  N  48.817  -1.197  88.605    0.422   1.380  -0.594  C25  R6W  27  
R6W  C27  C23  C  0  1  N  N  N  50.309  -2.911  89.775   -1.968   1.398   0.135  C27  R6W  28  
R6W  C29  C24  C  0  1  Y  N  N  58.548  -5.355  94.184   -7.263  -2.899  -2.225  C29  R6W  29  
R6W  C30  C25  C  0  1  Y  N  N  58.568  -5.867  95.470   -6.377  -2.351  -3.126  C30  R6W  30  
R6W  C31  C26  C  0  1  Y  N  N  57.395  -5.910  96.224   -5.555  -1.296  -2.747  C31  R6W  31  
R6W  C32  C27  C  0  1  Y  N  N  56.188  -5.470  95.679   -5.624  -0.789  -1.453  C32  R6W  32  
R6W  C33  C28  C  0  1  Y  N  N  56.183  -4.954  94.383   -6.505  -1.332  -0.551  C33  R6W  33  
R6W  C34  C29  C  0  1  Y  N  N  57.352  -4.887  93.647   -7.340  -2.390  -0.926  C34  R6W  34  
R6W  C35  C30  C  0  1  N  N  S  55.039  -4.379  93.563   -6.825  -1.028   0.892  C35  R6W  35  
R6W  N36  N4   N  0  1  N  N  N  55.750  -4.034  92.303   -7.872  -1.977   1.288  N36  R6W  36  
R6W  C37  C31  C  0  1  N  N  N  57.065  -4.300  92.323   -8.168  -2.758   0.235  C37  R6W  37  
R6W  O38  O3   O  0  1  N  N  N  57.870  -4.118  91.413   -9.000  -3.645   0.242  O38  R6W  38  
R6W  C39  C32  C  0  1  Y  N  N  54.320  -3.168  94.130   -7.329   0.386   1.024  C39  R6W  39  
R6W  C40  C33  C  0  1  Y  N  N  53.004  -2.853  93.940   -6.647   1.435   1.510  C40  R6W  40  
R6W  N41  N5   N  0  1  Y  N  N  52.709  -1.670  94.579   -7.430   2.557   1.475  N41  R6W  41  
R6W  C42  C34  C  0  1  Y  N  N  53.866  -1.172  95.154   -8.665   2.249   0.951  C42  R6W  42  
R6W  C43  C35  C  0  1  Y  N  N  54.905  -2.088  94.885   -8.655   0.877   0.640  C43  R6W  43  
R6W  C44  C36  C  0  1  Y  N  N  56.185  -1.807  95.367   -9.787   0.280   0.082  C44  R6W  44  
R6W  C45  C37  C  0  1  Y  N  N  54.084  -0.001  95.872   -9.811   2.996   0.698  C45  R6W  45  
R6W  C46  C38  C  0  1  Y  N  N  55.363   0.245  96.352  -10.920   2.386   0.153  C46  R6W  46  
R6W  C47  C39  C  0  1  Y  N  N  56.404  -0.643  96.097  -10.900   1.034  -0.163  C47  R6W  47  
R6W  C48  C40  C  0  1  N  N  N  51.925  -3.590  93.196   -5.230   1.384   2.020  C48  R6W  48  
R6W  N49  N6   N  0  1  N  N  N  51.596  -2.880  91.925   -4.299   1.413   0.884  N49  R6W  49  
R6W  O50  O4   O  0  1  N  N  N  57.478  -6.431  97.484   -4.684  -0.761  -3.639  O50  R6W  50  
R6W  H1   H1   H  0  1  N  N  N  45.501   4.618  82.023    5.048  -0.071   1.267  H1   R6W  51  
R6W  H2   H2   H  0  1  N  N  N  46.569   4.029  84.829    5.917  -1.171  -1.471  H2   R6W  52  
R6W  H3   H3   H  0  1  N  N  N  49.577  -0.396  81.065    9.627   4.184  -0.882  H3   R6W  53  
R6W  H4   H4   H  0  1  N  N  N  46.233   2.128  85.675    4.914   2.205  -2.629  H4   R6W  54  
R6W  H5   H5   H  0  1  N  N  N  46.073   0.439  85.083    5.027   0.430  -2.583  H5   R6W  55  
R6W  H6   H6   H  0  1  N  N  N  48.620   0.928  88.818    2.039   0.412   0.449  H6   R6W  56  
R6W  H7   H7   H  0  1  N  N  N  47.349  -0.032  89.648    2.076   2.190   0.524  H7   R6W  57  
R6W  H8   H8   H  0  1  N  N  N  49.987  -0.878  90.367   -0.350   0.429   1.178  H8   R6W  58  
R6W  H9   H9   H  0  1  N  N  N  48.571  -1.960  90.589   -0.314   2.207   1.254  H9   R6W  59  
R6W  H10  H10  H  0  1  N  N  N  49.642  -3.661  91.666   -2.740   0.447   1.908  H10  R6W  60  
R6W  H11  H11  H  0  1  N  N  N  50.952  -4.618  90.895   -2.704   2.225   1.983  H11  R6W  61  
R6W  H12  H12  H  0  1  N  N  N  48.770   8.258  82.815    8.155  -3.741   2.402  H12  R6W  62  
R6W  H13  H13  H  0  1  N  N  N  47.050   8.505  81.063    6.619  -2.862   4.104  H13  R6W  63  
R6W  H14  H14  H  0  1  N  N  N  49.042   4.215  85.672    8.260  -1.928  -2.254  H14  R6W  64  
R6W  H15  H15  H  0  1  N  N  N  47.984  -0.356  83.396    6.977   3.470  -1.735  H15  R6W  65  
R6W  H16  H16  H  0  1  N  N  N  49.119   4.537  81.503    9.773  -0.649   0.155  H16  R6W  66  
R6W  H17  H17  H  0  1  N  N  N  50.662   1.122  79.437   11.647   3.171   0.075  H17  R6W  67  
R6W  H18  H18  H  0  1  N  N  N  50.407   3.560  79.642   11.717   0.768   0.590  H18  R6W  68  
R6W  H19  H19  H  0  1  N  N  N  48.289   0.066  85.991    4.368   0.504  -0.284  H19  R6W  69  
R6W  H21  H21  H  0  1  N  N  N  44.677   5.961  80.428    5.261  -0.199   4.260  H21  R6W  70  
R6W  H22  H22  H  0  1  N  N  N  46.242   0.987  87.848    2.610   0.503  -1.963  H22  R6W  71  
R6W  H23  H23  H  0  1  N  N  N  46.556  -0.692  87.294    2.646   2.281  -1.887  H23  R6W  72  
R6W  H24  H24  H  0  1  N  N  N  48.196  -1.999  88.179    0.257   2.299  -1.158  H24  R6W  73  
R6W  H25  H25  H  0  1  N  N  N  49.648  -0.974  87.920    0.220   0.521  -1.233  H25  R6W  74  
R6W  H26  H26  H  0  1  N  N  N  49.827  -3.630  89.096   -2.133   2.316  -0.428  H26  R6W  75  
R6W  H27  H27  H  0  1  N  N  N  51.267  -2.586  89.344   -2.169   0.538  -0.504  H27  R6W  76  
R6W  H28  H28  H  0  1  N  N  N  59.456  -5.319  93.600   -7.900  -3.718  -2.524  H28  R6W  77  
R6W  H29  H29  H  0  1  N  N  N  59.493  -6.234  95.890   -6.321  -2.742  -4.131  H29  R6W  78  
R6W  H30  H30  H  0  1  N  N  N  55.274  -5.528  96.251   -4.984   0.030  -1.158  H30  R6W  79  
R6W  H31  H31  H  0  1  N  N  N  54.304  -5.173  93.365   -5.938  -1.168   1.510  H31  R6W  80  
R6W  H32  H32  H  0  1  N  N  N  55.288  -3.638  91.509   -8.284  -2.029   2.164  H32  R6W  81  
R6W  H33  H33  H  0  1  N  N  N  51.807  -1.241  94.621   -7.155   3.437   1.774  H33  R6W  82  
R6W  H34  H34  H  0  1  N  N  N  57.000  -2.489  95.174   -9.782  -0.773  -0.156  H34  R6W  83  
R6W  H35  H35  H  0  1  N  N  N  53.280   0.698  96.051   -9.832   4.051   0.928  H35  R6W  84  
R6W  H36  H36  H  0  1  N  N  N  55.553   1.137  96.931  -11.808   2.968  -0.042  H36  R6W  85  
R6W  H37  H37  H  0  1  N  N  N  57.394  -0.426  96.470  -11.775   0.572  -0.595  H37  R6W  86  
R6W  H38  H38  H  0  1  N  N  N  51.024  -3.646  93.824   -5.045   2.244   2.664  H38  R6W  87  
R6W  H39  H39  H  0  1  N  N  N  52.274  -4.607  92.964   -5.081   0.466   2.588  H39  R6W  88  
R6W  H40  H40  H  0  1  N  N  N  52.434  -2.783  91.388   -4.461   2.224   0.305  H40  R6W  89  
R6W  H42  H42  H  0  1  N  N  N  56.622  -6.406  97.894   -5.050  -0.030  -4.156  H42  R6W  90  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R6W  C18  C19  DOUB  Y  N   1  
R6W  C18  C17  SING  Y  N   2  
R6W  C19  C16  SING  Y  N   3  
R6W  O22  C3   SING  N  N   4  
R6W  C17  C14  DOUB  Y  N   5  
R6W  C16  C15  DOUB  Y  N   6  
R6W  C3   C2   DOUB  Y  N   7  
R6W  C3   C4   SING  Y  N   8  
R6W  C2   C1   SING  Y  N   9  
R6W  C4   C5   DOUB  Y  N  10  
R6W  C14  C15  SING  Y  N  11  
R6W  C14  N13  SING  Y  N  12  
R6W  C15  C11  SING  Y  N  13  
R6W  C1   C6   DOUB  Y  N  14  
R6W  C5   C6   SING  Y  N  15  
R6W  C5   C7   SING  N  N  16  
R6W  N13  C12  SING  Y  N  17  
R6W  C6   C9   SING  N  N  18  
R6W  C11  C12  DOUB  Y  N  19  
R6W  C11  C7   SING  N  N  20  
R6W  C12  C20  SING  N  N  21  
R6W  C7   N8   SING  N  N  22  
R6W  C9   N8   SING  N  N  23  
R6W  C9   O10  DOUB  N  N  24  
R6W  C20  N21  SING  N  N  25  
R6W  N21  C23  SING  N  N  26  
R6W  C23  C24  SING  N  N  27  
R6W  C25  C24  SING  N  N  28  
R6W  C25  C26  SING  N  N  29  
R6W  C27  C26  SING  N  N  30  
R6W  C27  C28  SING  N  N  31  
R6W  C28  N49  SING  N  N  32  
R6W  O38  C37  DOUB  N  N  33  
R6W  N49  C48  SING  N  N  34  
R6W  N36  C37  SING  N  N  35  
R6W  N36  C35  SING  N  N  36  
R6W  C37  C34  SING  N  N  37  
R6W  C48  C40  SING  N  N  38  
R6W  C35  C39  SING  N  N  39  
R6W  C35  C33  SING  N  N  40  
R6W  C34  C29  DOUB  Y  N  41  
R6W  C34  C33  SING  Y  N  42  
R6W  C40  C39  DOUB  Y  N  43  
R6W  C40  N41  SING  Y  N  44  
R6W  C39  C43  SING  Y  N  45  
R6W  C29  C30  SING  Y  N  46  
R6W  C33  C32  DOUB  Y  N  47  
R6W  N41  C42  SING  Y  N  48  
R6W  C43  C42  DOUB  Y  N  49  
R6W  C43  C44  SING  Y  N  50  
R6W  C42  C45  SING  Y  N  51  
R6W  C44  C47  DOUB  Y  N  52  
R6W  C30  C31  DOUB  Y  N  53  
R6W  C32  C31  SING  Y  N  54  
R6W  C45  C46  DOUB  Y  N  55  
R6W  C47  C46  SING  Y  N  56  
R6W  C31  O50  SING  N  N  57  
R6W  C4   H1   SING  N  N  58  
R6W  C7   H2   SING  N  N  59  
R6W  C17  H3   SING  N  N  60  
R6W  C20  H4   SING  N  N  61  
R6W  C20  H5   SING  N  N  62  
R6W  C24  H6   SING  N  N  63  
R6W  C24  H7   SING  N  N  64  
R6W  C26  H8   SING  N  N  65  
R6W  C26  H9   SING  N  N  66  
R6W  C28  H10  SING  N  N  67  
R6W  C28  H11  SING  N  N  68  
R6W  C1   H12  SING  N  N  69  
R6W  C2   H13  SING  N  N  70  
R6W  N8   H14  SING  N  N  71  
R6W  N13  H15  SING  N  N  72  
R6W  C16  H16  SING  N  N  73  
R6W  C18  H17  SING  N  N  74  
R6W  C19  H18  SING  N  N  75  
R6W  N21  H19  SING  N  N  76  
R6W  O22  H21  SING  N  N  77  
R6W  C23  H22  SING  N  N  78  
R6W  C23  H23  SING  N  N  79  
R6W  C25  H24  SING  N  N  80  
R6W  C25  H25  SING  N  N  81  
R6W  C27  H26  SING  N  N  82  
R6W  C27  H27  SING  N  N  83  
R6W  C29  H28  SING  N  N  84  
R6W  C30  H29  SING  N  N  85  
R6W  C32  H30  SING  N  N  86  
R6W  C35  H31  SING  N  N  87  
R6W  N36  H32  SING  N  N  88  
R6W  N41  H33  SING  N  N  89  
R6W  C44  H34  SING  N  N  90  
R6W  C45  H35  SING  N  N  91  
R6W  C46  H36  SING  N  N  92  
R6W  C47  H37  SING  N  N  93  
R6W  C48  H38  SING  N  N  94  
R6W  C48  H39  SING  N  N  95  
R6W  N49  H40  SING  N  N  96  
R6W  O50  H42  SING  N  N  97  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R6W  InChI             InChI                 1.03   "InChI=1S/C40H40N6O4/c47-23-13-15-25-29(19-23)37(45-39(25)49)35-27-9-3-5-11-31(27)43-33(35)21-41-17-7-1-2-8-18-42-22-34-36(28-10-4-6-12-32(28)44-34)38-30-20-24(48)14-16-26(30)40(50)46-38/h3-6,9-16,19-20,37-38,41-44,47-48H,1-2,7-8,17-18,21-22H2,(H,45,49)(H,46,50)/t37-,38-/m0/s1"  
R6W  InChIKey          InChI                 1.03   LWNXLGGZVHNJBW-UWXQCODUSA-N  
R6W  SMILES_CANONICAL  CACTVS                3.385  "Oc1ccc2C(=O)N[C@@H](c2c1)c3c(CNCCCCCCNCc4[nH]c5ccccc5c4[C@H]6NC(=O)c7ccc(O)cc67)[nH]c8ccccc38"  
R6W  SMILES            CACTVS                3.385  "Oc1ccc2C(=O)N[CH](c2c1)c3c(CNCCCCCCNCc4[nH]c5ccccc5c4[CH]6NC(=O)c7ccc(O)cc67)[nH]c8ccccc38"  
R6W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)c(c([nH]2)CNCCCCCCNCc3c(c4ccccc4[nH]3)[C@@H]5c6cc(ccc6C(=O)N5)O)[C@@H]7c8cc(ccc8C(=O)N7)O"  
R6W  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)c(c([nH]2)CNCCCCCCNCc3c(c4ccccc4[nH]3)C5c6cc(ccc6C(=O)N5)O)C7c8cc(ccc8C(=O)N7)O"  
#
_pdbx_chem_comp_identifier.comp_id          R6W
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R6W  "Create component"  2020-09-10  PDBE  
R6W  "Initial release"   2020-11-18  RCSB  
##
