data_N1W
# 
_chem_comp.id                                    N1W 
_chem_comp.name                                  "(2~{R})-2-[[(1~{S})-1-[(6~{S})-2-azanyl-1,4,5,6-tetrahydropyrimidin-6-yl]-2-[[(2~{S})-3-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-phenyl-propan-2-yl]amino]butan-2-yl]amino]-2-oxidanylidene-ethyl]carbamoylamino]-3-(4-hydroxyphenyl)propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H41 N7 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-11-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        611.689 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N1W 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6TCX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N1W C8  C1  C 0 1 Y N N N N N 20.968 -14.480 20.308 -7.107 -2.455 -0.046 C8  N1W 1  
N1W C5  C2  C 0 1 Y N N N N N 23.314 -15.649 19.441 -5.708 -2.690 2.327  C5  N1W 2  
N1W C6  C3  C 0 1 Y N N N N N 23.171 -15.307 20.771 -5.911 -3.802 1.532  C6  N1W 3  
N1W O6  O1  O 0 1 N N N N N N 21.750 -3.579  24.600 4.620  3.819  -0.233 O6  N1W 4  
N1W N1  N1  N 0 1 N N N N N N 21.400 -9.963  21.030 -1.599 1.182  -0.179 N1  N1W 5  
N1W C2  C4  C 0 1 N N N N N N 19.989 -14.528 17.982 -7.452 -0.004 0.326  C2  N1W 6  
N1W N2  N2  N 0 1 N N N N N N 22.760 -8.536  23.981 1.975  0.774  0.366  N2  N1W 7  
N1W N3  N3  N 0 1 N N N N N N 22.138 -6.794  25.318 4.244  1.318  0.456  N3  N1W 8  
N1W C4  C5  C 0 1 Y N N N N N 22.287 -15.402 18.543 -6.216 -1.463 1.942  C4  N1W 9  
N1W C22 C6  C 0 1 N N N N N N 21.926 -4.353  25.520 5.544  3.106  -0.545 C22 N1W 10 
N1W O5  O2  O 0 1 N N N N N N 21.338 -4.259  26.685 6.610  3.625  -1.175 O5  N1W 11 
N1W C14 C7  C 0 1 N N R N N N 22.869 -5.540  25.412 5.501  1.633  -0.228 C14 N1W 12 
N1W C15 C8  C 0 1 N N N N N N 23.861 -5.560  26.589 6.679  1.272  0.680  C15 N1W 13 
N1W C16 C9  C 0 1 Y N N N N N 25.211 -4.989  26.231 6.707  -0.219 0.898  C16 N1W 14 
N1W C21 C10 C 0 1 Y N N N N N 25.341 -3.663  25.840 6.013  -0.774 1.957  C21 N1W 15 
N1W C20 C11 C 0 1 Y N N N N N 26.567 -3.146  25.461 6.032  -2.141 2.155  C20 N1W 16 
N1W C19 C12 C 0 1 Y N N N N N 27.693 -3.957  25.472 6.749  -2.957 1.291  C19 N1W 17 
N1W O4  O3  O 0 1 N N N N N N 28.902 -3.459  25.082 6.769  -4.302 1.485  O4  N1W 18 
N1W C18 C13 C 0 1 Y N N N N N 27.581 -5.281  25.873 7.444  -2.397 0.229  C18 N1W 19 
N1W C17 C14 C 0 1 Y N N N N N 26.348 -5.786  26.249 7.421  -1.029 0.035  C17 N1W 20 
N1W C13 C15 C 0 1 N N N N N N 21.987 -7.430  24.131 3.132  1.064  -0.262 C13 N1W 21 
N1W O3  O4  O 0 1 N N N N N N 21.214 -7.034  23.261 3.172  1.097  -1.477 O3  N1W 22 
N1W C12 C16 C 0 1 N N S N N N 22.994 -9.149  22.682 0.767  0.498  -0.414 C12 N1W 23 
N1W C23 C17 C 0 1 N N S N N N 24.312 -9.945  22.646 0.747  -0.978 -0.818 C23 N1W 24 
N1W N6  N4  N 0 1 N N N N N N 24.151 -11.215 23.364 -0.445 -1.256 -1.634 N6  N1W 25 
N1W C26 C18 C 0 1 N N N N N N 24.806 -12.353 23.067 -0.467 -2.394 -2.405 C26 N1W 26 
N1W N5  N5  N 0 1 N N N N N N 24.523 -13.369 23.804 -1.659 -2.801 -2.955 N5  N1W 27 
N1W N4  N6  N 0 1 N N N N N N 25.686 -12.351 22.051 0.596  -3.095 -2.632 N4  N1W 28 
N1W C25 C19 C 0 1 N N N N N N 25.983 -11.171 21.248 1.910  -2.773 -2.088 C25 N1W 29 
N1W C24 C20 C 0 1 N N N N N N 24.789 -10.237 21.224 1.977  -1.300 -1.679 C24 N1W 30 
N1W C11 C21 C 0 1 N N N N N N 21.835 -10.065 22.291 -0.451 0.807  0.419  C11 N1W 31 
N1W O2  O5  O 0 1 N N N N N N 21.364 -10.856 23.105 -0.397 0.718  1.628  O2  N1W 32 
N1W C10 C22 C 0 1 N N S N N N 20.203 -10.634 20.550 -2.807 1.393  0.623  C10 N1W 33 
N1W C27 C23 C 0 1 N N N N N N 18.978 -9.699  20.574 -2.805 2.817  1.183  C27 N1W 34 
N1W C29 C24 C 0 1 N N N N N N 18.606 -9.282  21.994 -1.653 2.972  2.178  C29 N1W 35 
N1W C28 C25 C 0 1 N N N N N N 19.185 -8.476  19.690 -2.628 3.816  0.038  C28 N1W 36 
N1W C9  C26 C 0 1 N N N N N N 20.438 -11.200 19.150 -4.024 1.196  -0.243 C9  N1W 37 
N1W O1  O6  O 0 1 N N N N N N 21.287 -10.710 18.413 -3.915 1.186  -1.451 O1  N1W 38 
N1W N   N7  N 0 1 N N N N N N 19.660 -12.228 18.793 -5.235 1.029  0.325  N   N1W 39 
N1W C1  C27 C 0 1 N N S N N N 19.874 -13.046 17.598 -6.401 0.728  -0.510 C1  N1W 40 
N1W C   C28 C 0 1 N N N N N N 18.736 -12.785 16.626 -6.995 2.032  -1.046 C   N1W 41 
N1W O   O7  O 0 1 N N N N N N 18.937 -13.412 15.369 -7.499 2.809  0.042  O   N1W 42 
N1W C3  C29 C 0 1 Y N N N N N 21.100 -14.812 18.964 -6.910 -1.344 0.753  C3  N1W 43 
N1W C7  C30 C 0 1 Y N N N N N 21.998 -14.723 21.203 -6.610 -3.685 0.345  C7  N1W 44 
N1W H1  H1  H 0 1 N N N N N N 20.052 -14.028 20.658 -7.654 -2.364 -0.973 H1  N1W 45 
N1W H2  H2  H 0 1 N N N N N N 24.229 -16.110 19.099 -5.162 -2.781 3.254  H2  N1W 46 
N1W H3  H3  H 0 1 N N N N N N 23.973 -15.496 21.469 -5.514 -4.760 1.832  H3  N1W 47 
N1W H4  H4  H 0 1 N N N N N N 21.922 -9.400  20.389 -1.625 1.313  -1.140 H4  N1W 48 
N1W H5  H5  H 0 1 N N N N N N 19.037 -14.846 18.432 -7.691 0.588  1.209  H5  N1W 49 
N1W H6  H6  H 0 1 N N N N N N 20.175 -15.111 17.068 -8.353 -0.150 -0.269 H6  N1W 50 
N1W H7  H7  H 0 1 N N N N N N 23.183 -8.943  24.791 1.944  0.748  1.336  H7  N1W 51 
N1W H8  H8  H 0 1 N N N N N N 21.740 -7.194  26.144 4.212  1.292  1.425  H8  N1W 52 
N1W H9  H9  H 0 1 N N N N N N 22.410 -15.671 17.504 -6.062 -0.595 2.566  H9  N1W 53 
N1W H10 H10 H 0 1 N N N N N N 20.764 -3.502  26.690 6.592  4.575  -1.358 H10 N1W 54 
N1W H11 H11 H 0 1 N N N N N N 23.457 -5.413  24.491 5.565  1.060  -1.152 H11 N1W 55 
N1W H12 H12 H 0 1 N N N N N N 23.438 -4.969  27.414 7.610  1.588  0.209  H12 N1W 56 
N1W H13 H13 H 0 1 N N N N N N 23.996 -6.602  26.916 6.567  1.778  1.639  H13 N1W 57 
N1W H14 H14 H 0 1 N N N N N N 24.470 -3.024  25.832 5.455  -0.139 2.629  H14 N1W 58 
N1W H15 H15 H 0 1 N N N N N N 26.648 -2.113  25.157 5.491  -2.575 2.983  H15 N1W 59 
N1W H16 H16 H 0 1 N N N N N N 29.562 -4.139  25.149 6.061  -4.775 1.028  H16 N1W 60 
N1W H17 H17 H 0 1 N N N N N N 28.454 -5.916  25.892 8.002  -3.029 -0.444 H17 N1W 61 
N1W H18 H18 H 0 1 N N N N N N 26.269 -6.817  26.561 7.959  -0.593 -0.794 H18 N1W 62 
N1W H19 H19 H 0 1 N N N N N N 23.064 -8.354  21.925 0.762  1.120  -1.309 H19 N1W 63 
N1W H20 H20 H 0 1 N N N N N N 25.085 -9.346  23.150 0.741  -1.606 0.072  H20 N1W 64 
N1W H21 H21 H 0 1 N N N N N N 23.508 -11.236 24.130 -1.202 -0.649 -1.628 H21 N1W 65 
N1W H22 H22 H 0 1 N N N N N N 24.973 -14.247 23.640 -2.467 -2.288 -2.796 H22 N1W 66 
N1W H23 H23 H 0 1 N N N N N N 23.853 -13.281 24.541 -1.694 -3.601 -3.502 H23 N1W 67 
N1W H24 H24 H 0 1 N N N N N N 26.221 -11.482 20.220 2.100  -3.397 -1.215 H24 N1W 68 
N1W H25 H25 H 0 1 N N N N N N 26.847 -10.645 21.681 2.670  -2.971 -2.843 H25 N1W 69 
N1W H26 H26 H 0 1 N N N N N N 25.077 -9.293  20.737 1.976  -0.672 -2.570 H26 N1W 70 
N1W H27 H27 H 0 1 N N N N N N 23.972 -10.708 20.657 2.885  -1.121 -1.102 H27 N1W 71 
N1W H28 H28 H 0 1 N N N N N N 19.985 -11.480 21.218 -2.826 0.678  1.445  H28 N1W 72 
N1W H29 H29 H 0 1 N N N N N N 18.128 -10.264 20.163 -3.751 3.009  1.690  H29 N1W 73 
N1W H30 H30 H 0 1 N N N N N N 18.461 -10.179 22.614 -0.703 2.880  1.651  H30 N1W 74 
N1W H31 H31 H 0 1 N N N N N N 19.414 -8.669  22.419 -1.712 3.951  2.653  H31 N1W 75 
N1W H32 H32 H 0 1 N N N N N N 17.674 -8.697  21.972 -1.722 2.194  2.938  H32 N1W 76 
N1W H33 H33 H 0 1 N N N N N N 18.292 -7.836  19.734 -3.449 3.705  -0.670 H33 N1W 77 
N1W H34 H34 H 0 1 N N N N N N 20.059 -7.911  20.045 -2.627 4.830  0.438  H34 N1W 78 
N1W H35 H35 H 0 1 N N N N N N 19.354 -8.798  18.652 -1.683 3.624  -0.469 H35 N1W 79 
N1W H36 H36 H 0 1 N N N N N N 18.882 -12.452 19.380 -5.335 1.109  1.286  H36 N1W 80 
N1W H37 H37 H 0 1 N N N N N N 20.816 -12.742 17.118 -6.097 0.097  -1.345 H37 N1W 81 
N1W H38 H38 H 0 1 N N N N N N 18.649 -11.700 16.468 -6.221 2.596  -1.567 H38 N1W 82 
N1W H39 H39 H 0 1 N N N N N N 17.803 -13.168 17.065 -7.806 1.805  -1.738 H39 N1W 83 
N1W H40 H40 H 0 1 N N N N N N 18.202 -13.221 14.798 -7.891 3.652  -0.225 H40 N1W 84 
N1W H41 H41 H 0 1 N N N N N N 21.882 -14.454 22.243 -6.768 -4.554 -0.277 H41 N1W 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N1W O   C   SING N N 1  
N1W C   C1  SING N N 2  
N1W C1  C2  SING N N 3  
N1W C1  N   SING N N 4  
N1W C2  C3  SING N N 5  
N1W O1  C9  DOUB N N 6  
N1W C4  C3  DOUB Y N 7  
N1W C4  C5  SING Y N 8  
N1W N   C9  SING N N 9  
N1W C3  C8  SING Y N 10 
N1W C9  C10 SING N N 11 
N1W C5  C6  DOUB Y N 12 
N1W C28 C27 SING N N 13 
N1W C8  C7  DOUB Y N 14 
N1W C10 C27 SING N N 15 
N1W C10 N1  SING N N 16 
N1W C27 C29 SING N N 17 
N1W C6  C7  SING Y N 18 
N1W N1  C11 SING N N 19 
N1W C24 C25 SING N N 20 
N1W C24 C23 SING N N 21 
N1W C25 N4  SING N N 22 
N1W N4  C26 DOUB N N 23 
N1W C11 C12 SING N N 24 
N1W C11 O2  DOUB N N 25 
N1W C23 C12 SING N N 26 
N1W C23 N6  SING N N 27 
N1W C12 N2  SING N N 28 
N1W C26 N6  SING N N 29 
N1W C26 N5  SING N N 30 
N1W O3  C13 DOUB N N 31 
N1W N2  C13 SING N N 32 
N1W C13 N3  SING N N 33 
N1W O6  C22 DOUB N N 34 
N1W O4  C19 SING N N 35 
N1W N3  C14 SING N N 36 
N1W C14 C22 SING N N 37 
N1W C14 C15 SING N N 38 
N1W C20 C19 DOUB Y N 39 
N1W C20 C21 SING Y N 40 
N1W C19 C18 SING Y N 41 
N1W C22 O5  SING N N 42 
N1W C21 C16 DOUB Y N 43 
N1W C18 C17 DOUB Y N 44 
N1W C16 C17 SING Y N 45 
N1W C16 C15 SING N N 46 
N1W C8  H1  SING N N 47 
N1W C5  H2  SING N N 48 
N1W C6  H3  SING N N 49 
N1W N1  H4  SING N N 50 
N1W C2  H5  SING N N 51 
N1W C2  H6  SING N N 52 
N1W N2  H7  SING N N 53 
N1W N3  H8  SING N N 54 
N1W C4  H9  SING N N 55 
N1W O5  H10 SING N N 56 
N1W C14 H11 SING N N 57 
N1W C15 H12 SING N N 58 
N1W C15 H13 SING N N 59 
N1W C21 H14 SING N N 60 
N1W C20 H15 SING N N 61 
N1W O4  H16 SING N N 62 
N1W C18 H17 SING N N 63 
N1W C17 H18 SING N N 64 
N1W C12 H19 SING N N 65 
N1W C23 H20 SING N N 66 
N1W N6  H21 SING N N 67 
N1W N5  H22 SING N N 68 
N1W N5  H23 SING N N 69 
N1W C25 H24 SING N N 70 
N1W C25 H25 SING N N 71 
N1W C24 H26 SING N N 72 
N1W C24 H27 SING N N 73 
N1W C10 H28 SING N N 74 
N1W C27 H29 SING N N 75 
N1W C29 H30 SING N N 76 
N1W C29 H31 SING N N 77 
N1W C29 H32 SING N N 78 
N1W C28 H33 SING N N 79 
N1W C28 H34 SING N N 80 
N1W C28 H35 SING N N 81 
N1W N   H36 SING N N 82 
N1W C1  H37 SING N N 83 
N1W C   H38 SING N N 84 
N1W C   H39 SING N N 85 
N1W O   H40 SING N N 86 
N1W C7  H41 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N1W InChI            InChI                1.03  "InChI=1S/C30H41N7O7/c1-17(2)24(26(40)33-20(16-38)14-18-6-4-3-5-7-18)36-27(41)25(22-12-13-32-29(31)34-22)37-30(44)35-23(28(42)43)15-19-8-10-21(39)11-9-19/h3-11,17,20,22-25,38-39H,12-16H2,1-2H3,(H,33,40)(H,36,41)(H,42,43)(H3,31,32,34)(H2,35,37,44)/t20-,22-,23+,24-,25-/m0/s1" 
N1W InChIKey         InChI                1.03  JRKYEAYRXQTOFS-JRBASJLZSA-N                                                                                                                                                                                                                                                        
N1W SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](NC(=O)[C@@H](NC(=O)N[C@H](Cc1ccc(O)cc1)C(O)=O)[C@@H]2CCN=C(N)N2)C(=O)N[C@H](CO)Cc3ccccc3"                                                                                                                                                                              
N1W SMILES           CACTVS               3.385 "CC(C)[CH](NC(=O)[CH](NC(=O)N[CH](Cc1ccc(O)cc1)C(O)=O)[CH]2CCN=C(N)N2)C(=O)N[CH](CO)Cc3ccccc3"                                                                                                                                                                                     
N1W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](Cc1ccccc1)CO)NC(=O)[C@H]([C@@H]2CCN=C(N2)N)NC(=O)N[C@H](Cc3ccc(cc3)O)C(=O)O"                                                                                                                                                                             
N1W SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(Cc1ccccc1)CO)NC(=O)C(C2CCN=C(N2)N)NC(=O)NC(Cc3ccc(cc3)O)C(=O)O"                                                                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           N1W 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-[[(1~{S})-1-[(6~{S})-2-azanyl-1,4,5,6-tetrahydropyrimidin-6-yl]-2-[[(2~{S})-3-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-phenyl-propan-2-yl]amino]butan-2-yl]amino]-2-oxidanylidene-ethyl]carbamoylamino]-3-(4-hydroxyphenyl)propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N1W "Create component" 2019-11-06 PDBE 
N1W "Initial release"  2019-12-04 RCSB 
N1W "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            N1W 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
