data_KYW
#

_chem_comp.id                                   KYW
_chem_comp.name                                 "(N6,N6)-methyl,benzyl-C2-chloro-(alpha,beta)-methylene-ADP"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H24 Cl N5 O9 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       563.822
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KYW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S7H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KYW  N1      N1   N   0  1  Y  N  N  -13.277  23.542  -36.778  -4.849   1.185  -0.544  N1      KYW   1  
KYW  N3      N2   N   0  1  Y  N  N  -14.763  21.645  -36.828  -2.856   2.349  -0.701  N3      KYW   2  
KYW  C4      C1   C   0  1  Y  N  N  -14.612  21.605  -35.504  -2.161   1.299  -0.275  C4      KYW   3  
KYW  C5      C2   C   0  1  Y  N  N  -13.908  22.503  -34.724  -2.842   0.111   0.040  C5      KYW   4  
KYW  C6      C3   C   0  1  Y  N  N  -13.237  23.543  -35.431  -4.239   0.086  -0.112  C6      KYW   5  
KYW  C8      C4   C   0  1  Y  N  N  -14.831  21.142  -33.379  -0.732  -0.240   0.396  C8      KYW   6  
KYW  C20     C5   C   0  1  N  N  N  -11.768  25.518  -35.713  -4.713  -1.497   1.561  C20     KYW   7  
KYW  C21     C6   C   0  1  N  N  N  -12.019  24.598  -33.455  -6.397  -0.845  -0.052  C21     KYW   8  
KYW  C22     C7   C   0  1  Y  N  N   -7.753  25.034  -33.194  -8.457  -4.579   0.205  C22     KYW   9  
KYW  C24     C8   C   0  1  Y  N  N   -9.957  25.860  -32.737  -7.302  -2.933  -1.095  C24     KYW  10  
KYW  C26     C9   C   0  1  Y  N  N   -9.676  23.730  -33.786  -7.618  -2.597   1.255  C26     KYW  11  
KYW  PB      P1   P   0  1  N  N  N  -17.026  19.653  -28.955   7.444  -2.474  -0.587  PB      KYW  12  
KYW  O1B     O1   O   0  1  N  N  N  -15.954  19.736  -27.923   7.831  -3.462  -1.798  O1B     KYW  13  
KYW  O2B     O2   O   0  1  N  N  N  -16.472  20.119  -30.319   7.075  -3.274   0.602  O2B     KYW  14  
KYW  O3B     O3   O   0  1  N  N  N  -18.222  20.596  -28.724   8.706  -1.539  -0.235  O3B     KYW  15  
KYW  PA      P2   P   0  1  N  N  N  -18.891  17.672  -30.454   5.595  -0.313   0.290  PA      KYW  16  
KYW  O1A     O4   O   0  1  N  N  N  -19.371  16.237  -30.561   5.226  -1.112   1.480  O1A     KYW  17  
KYW  O2A     O5   O   0  1  N  N  N  -20.157  18.517  -30.211   6.857   0.623   0.643  O2A     KYW  18  
KYW  C3A     C10  C   0  1  N  N  N  -17.697  18.004  -29.149   6.033  -1.431  -1.081  C3A     KYW  19  
KYW  "O5'"   O6   O   0  1  N  N  N  -18.257  18.156  -31.813   4.349   0.608  -0.145  "O5'"   KYW  20  
KYW  "C5'"   C11  C   0  1  N  N  N  -17.023  17.576  -32.273   3.703   1.517   0.748  "C5'"   KYW  21  
KYW  "C4'"   C12  C   0  1  N  N  R  -16.793  17.817  -33.738   2.564   2.230   0.016  "C4'"   KYW  22  
KYW  "O4'"   O7   O   0  1  N  N  N  -16.879  19.227  -34.021   1.531   1.287  -0.317  "O4'"   KYW  23  
KYW  "C3'"   C13  C   0  1  N  N  S  -15.385  17.418  -34.176   1.937   3.296   0.934  "C3'"   KYW  24  
KYW  "O3'"   O8   O   0  1  N  N  N  -15.306  16.015  -34.392   2.058   4.594   0.349  "O3'"   KYW  25  
KYW  "C2'"   C14  C   0  1  N  N  R  -15.151  18.308  -35.387   0.449   2.882   1.036  "C2'"   KYW  26  
KYW  "O2'"   O9   O   0  1  N  N  N  -15.682  17.757  -36.574  -0.406   4.025   0.975  "O2'"   KYW  27  
KYW  "C1'"   C15  C   0  1  N  N  R  -15.961  19.561  -35.036   0.274   1.990  -0.225  "C1'"   KYW  28  
KYW  N9      N3   N   0  1  Y  N  N  -15.182  20.715  -34.631  -0.833   1.047  -0.040  N9      KYW  29  
KYW  N7      N4   N   0  1  Y  N  N  -14.076  22.213  -33.375  -1.911  -0.788   0.442  N7      KYW  30  
KYW  N6      N5   N   0  1  N  N  N  -12.398  24.489  -34.868  -4.963  -1.056   0.182  N6      KYW  31  
KYW  C2      C16  C   0  1  Y  N  N  -14.074  22.650  -37.351  -4.166   2.280  -0.827  C2      KYW  32  
KYW  C23     C17  C   0  1  Y  N  N   -8.583  26.023  -32.701  -7.970  -4.140  -1.012  C23     KYW  33  
KYW  C25     C18  C   0  1  Y  N  N  -10.522  24.715  -33.287  -7.121  -2.164   0.040  C25     KYW  34  
KYW  C27     C19  C   0  1  Y  N  N   -8.302  23.889  -33.739  -8.281  -3.807   1.338  C27     KYW  35  
KYW  CL2     CL1  CL  0  0  N  N  N  -14.237  22.823  -39.077  -5.026   3.681  -1.388  CL2     KYW  36  
KYW  H8      H1   H   0  1  N  N  N  -15.148  20.641  -32.476   0.191  -0.733   0.665  H8      KYW  37  
KYW  H1      H2   H   0  1  N  N  N  -11.142  26.173  -35.089  -5.008  -0.708   2.253  H1      KYW  38  
KYW  H2      H3   H   0  1  N  N  N  -11.143  25.033  -36.477  -5.294  -2.396   1.765  H2      KYW  39  
KYW  H3      H4   H   0  1  N  N  N  -12.549  26.117  -36.204  -3.652  -1.713   1.686  H3      KYW  40  
KYW  H5      H5   H   0  1  N  N  N  -12.497  25.491  -33.025  -6.791  -0.162   0.701  H5      KYW  41  
KYW  H4      H6   H   0  1  N  N  N  -12.369  23.702  -32.922  -6.545  -0.417  -1.043  H4      KYW  42  
KYW  H21     H7   H   0  1  N  N  N   -6.681  25.155  -33.153  -8.979  -5.522   0.269  H21     KYW  43  
KYW  H23     H8   H   0  1  N  N  N  -10.597  26.631  -32.333  -6.921  -2.590  -2.046  H23     KYW  44  
KYW  H25     H9   H   0  1  N  N  N  -10.096  22.832  -34.215  -7.480  -1.994   2.140  H25     KYW  45  
KYW  H6      H10  H   0  1  N  N  N  -15.154  20.059  -28.322   8.576  -4.048  -1.606  H6      KYW  46  
KYW  H7      H11  H   0  1  N  N  N  -18.300  21.195  -29.457   9.003  -0.986  -0.970  H7      KYW  47  
KYW  H9      H12  H   0  1  N  N  N  -20.918  17.949  -30.187   7.154   1.176  -0.092  H9      KYW  48  
KYW  H3A2    H13  H   0  0  N  N  N  -18.185  17.745  -28.198   6.305  -0.843  -1.957  H3A2    KYW  49  
KYW  H3A1    H14  H   0  0  N  N  N  -16.844  17.331  -29.319   5.179  -2.065  -1.320  H3A1    KYW  50  
KYW  "H5'2"  H15  H   0  0  N  N  N  -17.053  16.491  -32.093   3.300   0.966   1.598  "H5'2"  KYW  51  
KYW  "H5'1"  H16  H   0  0  N  N  N  -16.191  18.019  -31.706   4.425   2.254   1.102  "H5'1"  KYW  52  
KYW  "H4'"   H17  H   0  1  N  N  N  -17.533  17.257  -34.328   2.944   2.699  -0.892  "H4'"   KYW  53  
KYW  "H3'"   H18  H   0  1  N  N  N  -14.679  17.713  -33.385   2.406   3.277   1.918  "H3'"   KYW  54  
KYW  "HO3'"  H19  H   0  0  N  N  N  -15.467  15.559  -33.575   1.679   5.305   0.885  "HO3'"  KYW  55  
KYW  "H2'"   H20  H   0  1  N  N  N  -14.084  18.556  -35.484   0.266   2.309   1.946  "H2'"   KYW  56  
KYW  "HO2'"  H21  H   0  0  N  N  N  -15.192  16.978  -36.809  -0.333   4.612   1.739  "HO2'"  KYW  57  
KYW  "H1'"   H22  H   0  1  N  N  N  -16.527  19.837  -35.938   0.109   2.604  -1.110  "H1'"   KYW  58  
KYW  H22     H23  H   0  1  N  N  N   -8.158  26.925  -32.287  -8.110  -4.741  -1.898  H22     KYW  59  
KYW  H26     H24  H   0  1  N  N  N   -7.657  23.116  -34.129  -8.662  -4.149   2.289  H26     KYW  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KYW  CL2    C2      SING  N  N   1  
KYW  C2     N3      DOUB  Y  N   2  
KYW  C2     N1      SING  Y  N   3  
KYW  N3     C4      SING  Y  N   4  
KYW  N1     C6      DOUB  Y  N   5  
KYW  "O2'"  "C2'"   SING  N  N   6  
KYW  C20    N6      SING  N  N   7  
KYW  C4     C5      DOUB  Y  N   8  
KYW  C4     N9      SING  Y  N   9  
KYW  C6     N6      SING  N  N  10  
KYW  C6     C5      SING  Y  N  11  
KYW  "C2'"  "C1'"   SING  N  N  12  
KYW  "C2'"  "C3'"   SING  N  N  13  
KYW  "C1'"  N9      SING  N  N  14  
KYW  "C1'"  "O4'"   SING  N  N  15  
KYW  N6     C21     SING  N  N  16  
KYW  C5     N7      SING  Y  N  17  
KYW  N9     C8      SING  Y  N  18  
KYW  "O3'"  "C3'"   SING  N  N  19  
KYW  "C3'"  "C4'"   SING  N  N  20  
KYW  "O4'"  "C4'"   SING  N  N  21  
KYW  C26    C27     DOUB  Y  N  22  
KYW  C26    C25     SING  Y  N  23  
KYW  C27    C22     SING  Y  N  24  
KYW  "C4'"  "C5'"   SING  N  N  25  
KYW  C21    C25     SING  N  N  26  
KYW  C8     N7      DOUB  Y  N  27  
KYW  C25    C24     DOUB  Y  N  28  
KYW  C22    C23     DOUB  Y  N  29  
KYW  C24    C23     SING  Y  N  30  
KYW  "C5'"  "O5'"   SING  N  N  31  
KYW  "O5'"  PA      SING  N  N  32  
KYW  O1A    PA      DOUB  N  N  33  
KYW  PA     O2A     SING  N  N  34  
KYW  PA     C3A     SING  N  N  35  
KYW  O2B    PB      DOUB  N  N  36  
KYW  C3A    PB      SING  N  N  37  
KYW  PB     O3B     SING  N  N  38  
KYW  PB     O1B     SING  N  N  39  
KYW  C8     H8      SING  N  N  40  
KYW  C20    H1      SING  N  N  41  
KYW  C20    H2      SING  N  N  42  
KYW  C20    H3      SING  N  N  43  
KYW  C21    H5      SING  N  N  44  
KYW  C21    H4      SING  N  N  45  
KYW  C22    H21     SING  N  N  46  
KYW  C24    H23     SING  N  N  47  
KYW  C26    H25     SING  N  N  48  
KYW  O1B    H6      SING  N  N  49  
KYW  O3B    H7      SING  N  N  50  
KYW  O2A    H9      SING  N  N  51  
KYW  C3A    H3A2    SING  N  N  52  
KYW  C3A    H3A1    SING  N  N  53  
KYW  "C5'"  "H5'2"  SING  N  N  54  
KYW  "C5'"  "H5'1"  SING  N  N  55  
KYW  "C4'"  "H4'"   SING  N  N  56  
KYW  "C3'"  "H3'"   SING  N  N  57  
KYW  "O3'"  "HO3'"  SING  N  N  58  
KYW  "C2'"  "H2'"   SING  N  N  59  
KYW  "O2'"  "HO2'"  SING  N  N  60  
KYW  "C1'"  "H1'"   SING  N  N  61  
KYW  C23    H22     SING  N  N  62  
KYW  C27    H26     SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KYW  InChI             InChI                 1.03   "InChI=1S/C19H24ClN5O9P2/c1-24(7-11-5-3-2-4-6-11)16-13-17(23-19(20)22-16)25(9-21-13)18-15(27)14(26)12(34-18)8-33-36(31,32)10-35(28,29)30/h2-6,9,12,14-15,18,26-27H,7-8,10H2,1H3,(H,31,32)(H2,28,29,30)/t12-,14-,15-,18-/m1/s1"  
KYW  InChIKey          InChI                 1.03   NRCRRUYZIFHEBT-SCFUHWHPSA-N  
KYW  SMILES_CANONICAL  CACTVS                3.385  "CN(Cc1ccccc1)c2nc(Cl)nc3n(cnc23)[C@@H]4O[C@H](CO[P](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]4O"  
KYW  SMILES            CACTVS                3.385  "CN(Cc1ccccc1)c2nc(Cl)nc3n(cnc23)[CH]4O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]4O"  
KYW  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(Cc1ccccc1)c2c3c(nc(n2)Cl)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(CP(=O)(O)O)O)O)O"  
KYW  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(Cc1ccccc1)c2c3c(nc(n2)Cl)n(cn3)C4C(C(C(O4)COP(=O)(CP(=O)(O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          KYW
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[methyl-(phenylmethyl)amino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KYW  "Create component"  2019-07-05  EBI   
KYW  "Initial release"   2020-07-22  RCSB  
##
