data_DKW
#

_chem_comp.id                                   DKW
_chem_comp.name                                 "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-prop-2-ynyl-oxolane-2-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H14 N6 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        6-CARBOXYMETHYLURACIL
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-01-23
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       318.288
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DKW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6FJZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DKW  N3   N1   N  0  1  Y  N  N  -17.596  16.855  41.539   3.461   1.298   0.629  N3   DKW   1  
DKW  C4   C1   C  0  1  Y  N  N  -16.363  16.663  41.055   2.842   0.182   0.258  C4   DKW   2  
DKW  C5   C2   C  0  1  Y  N  N  -16.035  15.501  40.361   3.603  -0.879  -0.263  C5   DKW   3  
DKW  C6   C3   C  0  1  Y  N  N  -16.958  14.522  40.155   4.994  -0.709  -0.368  C6   DKW   4  
DKW  C8   C4   C  0  1  Y  N  N  -14.304  16.682  40.427   1.529  -1.512  -0.259  C8   DKW   5  
DKW  C2   C5   C  0  1  Y  N  N  -18.515  15.918  41.348   4.767   1.413   0.513  C2   DKW   6  
DKW  N1   N2   N  0  1  Y  N  N  -18.234  14.733  40.651   5.523   0.444   0.030  N1   DKW   7  
DKW  CAK  C6   C  0  1  N  N  R  -14.727  18.615  41.579   0.373   0.516   0.699  CAK  DKW   8  
DKW  CAM  C7   C  0  1  N  N  S  -14.253  20.896  40.671  -1.931   0.283   0.693  CAM  DKW   9  
DKW  CAN  C8   C  0  1  N  N  S  -14.221  20.652  42.193  -1.602   0.973  -0.655  CAN  DKW  10  
DKW  CAP  C9   C  0  1  N  N  R  -13.666  19.194  42.368  -0.135   1.421  -0.440  CAP  DKW  11  
DKW  CAR  C10  C  0  1  N  N  N  -12.703  20.653  40.627  -3.045  -0.718   0.518  CAR  DKW  12  
DKW  CAU  C11  C  0  1  N  N  N  -10.501  21.697  40.434  -5.361  -1.272   0.003  CAU  DKW  13  
DKW  CAV  C12  C  0  1  N  N  N  -10.168  21.487  38.997  -6.598  -0.569  -0.372  CAV  DKW  14  
DKW  CAW  C13  C  0  1  N  N  N   -9.943  21.316  37.843  -7.585  -0.008  -0.671  CAW  DKW  15  
DKW  N6   N3   N  0  1  N  N  N  -16.606  13.429  39.482   5.795  -1.719  -0.872  N6   DKW  16  
DKW  N7   N4   N  0  1  Y  N  N  -14.773  15.538  39.992   2.741  -1.881  -0.558  N7   DKW  17  
DKW  N9   N5   N  0  1  Y  N  N  -15.251  17.371  41.058   1.539  -0.247   0.248  N9   DKW  18  
DKW  NAT  N6   N  0  1  N  N  N  -11.968  21.750  40.494  -4.279  -0.300   0.173  NAT  DKW  19  
DKW  OAL  O1   O  0  1  N  N  N  -14.906  19.604  40.472  -0.698  -0.380   1.042  OAL  DKW  20  
DKW  OAO  O2   O  0  1  N  N  N  -15.401  20.957  42.962  -2.452   2.100  -0.873  OAO  DKW  21  
DKW  OAQ  O3   O  0  1  N  N  N  -14.265  18.720  43.583  -0.084   2.794  -0.049  OAQ  DKW  22  
DKW  OAS  O4   O  0  1  N  N  N  -12.187  19.596  40.219  -2.830  -1.899   0.689  OAS  DKW  23  
DKW  H1   H1   H  0  1  N  N  N  -13.287  17.019  40.292   0.646  -2.119  -0.394  H1   DKW  24  
DKW  H2   H2   H  0  1  N  N  N  -19.509  16.072  41.741   5.238   2.333   0.824  H2   DKW  25  
DKW  H3   H3   H  0  1  N  N  N  -15.583  18.911  42.203   0.639   1.123   1.564  H3   DKW  26  
DKW  H4   H4   H  0  1  N  N  N  -14.670  21.831  40.268  -2.197   1.023   1.448  H4   DKW  27  
DKW  H5   H5   H  0  1  N  N  N  -13.424  21.307  42.575  -1.676   0.267  -1.482  H5   DKW  28  
DKW  H6   H6   H  0  1  N  N  N  -12.608  19.002  42.134   0.450   1.258  -1.346  H6   DKW  29  
DKW  H7   H7   H  0  1  N  N  N  -10.121  20.863  41.042  -5.517  -1.809   0.939  H7   DKW  30  
DKW  H8   H8   H  0  1  N  N  N  -10.067  22.641  40.795  -5.093  -1.981  -0.781  H8   DKW  31  
DKW  H9   H9   H  0  1  N  N  N   -9.742  21.163  36.813  -8.468   0.493  -0.939  H9   DKW  32  
DKW  H10  H10  H  0  1  N  N  N  -17.393  12.817  39.404   5.397  -2.556  -1.158  H10  DKW  33  
DKW  H11  H11  H  0  1  N  N  N  -16.292  13.687  38.568   6.754  -1.589  -0.939  H11  DKW  34  
DKW  H12  H12  H  0  1  N  N  N  -12.425  22.637  40.433  -4.450   0.645   0.036  H12  DKW  35  
DKW  H13  H13  H  0  1  N  N  N  -15.242  20.760  43.878  -3.392   1.880  -0.923  H13  DKW  36  
DKW  H14  H14  H  0  1  N  N  N  -13.730  18.982  44.323  -0.392   3.408  -0.729  H14  DKW  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DKW  CAW  CAV  TRIP  N  N   1  
DKW  CAV  CAU  SING  N  N   2  
DKW  N6   C6   SING  N  N   3  
DKW  N7   C5   SING  Y  N   4  
DKW  N7   C8   DOUB  Y  N   5  
DKW  C6   C5   DOUB  Y  N   6  
DKW  C6   N1   SING  Y  N   7  
DKW  OAS  CAR  DOUB  N  N   8  
DKW  C5   C4   SING  Y  N   9  
DKW  C8   N9   SING  Y  N  10  
DKW  CAU  NAT  SING  N  N  11  
DKW  OAL  CAM  SING  N  N  12  
DKW  OAL  CAK  SING  N  N  13  
DKW  NAT  CAR  SING  N  N  14  
DKW  CAR  CAM  SING  N  N  15  
DKW  N1   C2   DOUB  Y  N  16  
DKW  CAM  CAN  SING  N  N  17  
DKW  C4   N9   SING  Y  N  18  
DKW  C4   N3   DOUB  Y  N  19  
DKW  N9   CAK  SING  N  N  20  
DKW  C2   N3   SING  Y  N  21  
DKW  CAK  CAP  SING  N  N  22  
DKW  CAN  CAP  SING  N  N  23  
DKW  CAN  OAO  SING  N  N  24  
DKW  CAP  OAQ  SING  N  N  25  
DKW  C8   H1   SING  N  N  26  
DKW  C2   H2   SING  N  N  27  
DKW  CAK  H3   SING  N  N  28  
DKW  CAM  H4   SING  N  N  29  
DKW  CAN  H5   SING  N  N  30  
DKW  CAP  H6   SING  N  N  31  
DKW  CAU  H7   SING  N  N  32  
DKW  CAU  H8   SING  N  N  33  
DKW  CAW  H9   SING  N  N  34  
DKW  N6   H10  SING  N  N  35  
DKW  N6   H11  SING  N  N  36  
DKW  NAT  H12  SING  N  N  37  
DKW  OAO  H13  SING  N  N  38  
DKW  OAQ  H14  SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DKW  InChI             InChI                 1.03   "InChI=1S/C13H14N6O4/c1-2-3-15-12(22)9-7(20)8(21)13(23-9)19-5-18-6-10(14)16-4-17-11(6)19/h1,4-5,7-9,13,20-21H,3H2,(H,15,22)(H2,14,16,17)/t7-,8+,9-,13+/m0/s1"  
DKW  InChIKey          InChI                 1.03   YDTVWSYKLQAQHX-QRIDJOKKSA-N  
DKW  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)NCC#C"  
DKW  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)NCC#C"  
DKW  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C#CCNC(=O)[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"  
DKW  SMILES            "OpenEye OEToolkits"  2.0.6  "C#CCNC(=O)C1C(C(C(O1)n2cnc3c2ncnc3N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          DKW
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-prop-2-ynyl-oxolane-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DKW  "Create component"  2018-01-23  RCSB  
DKW  "Initial release"   2019-02-06  RCSB  
DKW  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DKW
_pdbx_chem_comp_synonyms.name        6-CARBOXYMETHYLURACIL
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
