data_B8W
#

_chem_comp.id                                   B8W
_chem_comp.name                                 "6-methyl, guanosine-5'-monophosphate"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C11 H16 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id              G
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-25
_chem_comp.pdbx_modified_date                   2019-04-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       377.247
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    B8W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6EK0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B8W  C2     C1   C  0  1  Y  N  N  193.811  243.090  267.325  -4.675   0.866  -0.636  C2     B8W   1  
B8W  C4     C2   C  0  1  Y  N  N  192.767  241.049  266.850  -2.570   0.034  -0.213  C4     B8W   2  
B8W  C5     C3   C  0  1  Y  N  N  191.940  241.222  268.043  -3.144  -1.194   0.159  C5     B8W   3  
B8W  C6     C4   C  0  1  Y  N  N  192.148  242.441  268.844  -4.541  -1.319   0.106  C6     B8W   4  
B8W  O6     O1   O  0  1  N  N  N  191.423  242.693  269.971  -5.145  -2.480   0.455  O6     B8W   5  
B8W  N3     N1   N  0  1  Y  N  N  193.668  241.999  266.547  -3.363   1.028  -0.601  N3     B8W   6  
B8W  N2     N2   N  0  1  N  N  N  194.724  244.002  266.959  -5.469   1.923  -1.051  N2     B8W   7  
B8W  N1     N3   N  0  1  Y  N  N  193.082  243.310  268.434  -5.257  -0.276  -0.293  N1     B8W   8  
B8W  C8     C5   C  0  1  Y  N  N  191.433  239.371  267.056  -0.995  -1.394   0.373  C8     B8W   9  
B8W  "C1'"  C6   C  0  1  N  N  R  192.954  239.323  265.069  -0.192   0.891  -0.338  "C1'"  B8W  10  
B8W  "C2'"  C7   C  0  1  N  N  R  194.226  238.518  265.269   0.005   1.810   0.894  "C2'"  B8W  11  
B8W  "C3'"  C8   C  0  1  N  N  S  193.688  237.095  265.360   1.450   2.325   0.687  "C3'"  B8W  12  
B8W  "C4'"  C9   C  0  1  N  N  R  192.474  237.115  264.444   2.088   1.291  -0.260  "C4'"  B8W  13  
B8W  "C5'"  C10  C  0  1  N  N  N  191.358  236.165  264.799   3.320   0.670   0.401  "C5'"  B8W  14  
B8W  C61    C11  C  0  1  N  N  N  191.080  244.040  270.272  -6.571  -2.521   0.371  C61    B8W  15  
B8W  N7     N4   N  0  1  Y  N  N  191.140  240.156  268.114  -2.127  -2.021   0.506  N7     B8W  16  
B8W  N9     N5   N  0  1  Y  N  N  192.411  239.895  266.311  -1.215  -0.122  -0.068  N9     B8W  17  
B8W  "O2'"  O2   O  0  1  N  N  N  195.023  238.677  264.107  -0.929   2.892   0.879  "O2'"  B8W  18  
B8W  "O3'"  O3   O  0  1  N  N  N  194.636  236.116  264.972   1.438   3.620   0.082  "O3'"  B8W  19  
B8W  "O4'"  O4   O  0  1  N  N  N  191.981  238.472  264.515   1.102   0.274  -0.508  "O4'"  B8W  20  
B8W  "O5'"  O5   O  0  1  N  N  N  190.753  236.512  266.035   3.961  -0.213  -0.522  "O5'"  B8W  21  
B8W  OP1    O6   O  0  1  N  N  N  188.848  236.598  267.721   6.346  -0.107   0.299  OP1    B8W  22  
B8W  OP2    O7   O  0  1  N  N  N  189.084  234.669  266.000   4.968  -2.100   1.007  OP2    B8W  23  
B8W  P      P1   P  0  1  N  N  N  189.240  236.126  266.348   5.294  -1.041  -0.161  P      B8W  24  
B8W  H1     H1   H  0  1  N  N  N  195.175  243.704  266.118  -6.433   1.821  -1.087  H1     B8W  25  
B8W  H2     H2   H  0  1  N  N  N  194.273  244.880  266.801  -5.061   2.765  -1.306  H2     B8W  26  
B8W  H3     H3   H  0  1  N  N  N  190.939  238.436  266.838  -0.024  -1.818   0.581  H3     B8W  27  
B8W  H4     H4   H  0  1  N  N  N  193.173  240.142  264.368  -0.458   1.479  -1.216  H4     B8W  28  
B8W  H5     H5   H  0  1  N  N  N  194.747  238.810  266.193  -0.076   1.242   1.821  H5     B8W  29  
B8W  H6     H6   H  0  1  N  N  N  193.351  236.910  266.391   1.985   2.354   1.636  H6     B8W  30  
B8W  H7     H7   H  0  1  N  N  N  192.807  236.899  263.418   2.371   1.768  -1.198  H7     B8W  31  
B8W  H8     H8   H  0  1  N  N  N  190.596  236.197  264.007   4.014   1.459   0.689  H8     B8W  32  
B8W  H9     H9   H  0  1  N  N  N  191.766  235.146  264.874   3.016   0.112   1.286  H9     B8W  33  
B8W  H10    H10  H  0  1  N  N  N  190.500  244.071  271.206  -6.995  -1.762   1.027  H10    B8W  34  
B8W  H11    H11  H  0  1  N  N  N  191.998  244.634  270.391  -6.880  -2.327  -0.656  H11    B8W  35  
B8W  H12    H12  H  0  1  N  N  N  190.477  244.457  269.452  -6.925  -3.505   0.677  H12    B8W  36  
B8W  H13    H13  H  0  1  N  N  N  195.828  238.182  264.205  -0.845   3.495   1.630  H13    B8W  37  
B8W  H14    H14  H  0  1  N  N  N  195.376  236.137  265.568   0.997   4.298   0.613  H14    B8W  38  
B8W  H16    H16  H  0  1  N  N  N  188.732  234.200  266.748   4.286  -2.745   0.775  H16    B8W  39  
B8W  OP3    OP3  O  0  1  N  N  N  188.387  237.003  265.312   5.808  -1.827  -1.469  OP3    B8W  40  
B8W  H15    H15  H  0  1  N  N  N  187.836  237.612  265.790   6.610  -2.348  -1.325  H15    B8W  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B8W  "O2'"  "C2'"  SING  N  N   1  
B8W  "C4'"  "O4'"  SING  N  N   2  
B8W  "C4'"  "C5'"  SING  N  N   3  
B8W  "C4'"  "C3'"  SING  N  N   4  
B8W  "O4'"  "C1'"  SING  N  N   5  
B8W  "C5'"  "O5'"  SING  N  N   6  
B8W  "O3'"  "C3'"  SING  N  N   7  
B8W  "C1'"  "C2'"  SING  N  N   8  
B8W  "C1'"  N9     SING  N  N   9  
B8W  "C2'"  "C3'"  SING  N  N  10  
B8W  OP2    P      SING  N  N  11  
B8W  "O5'"  P      SING  N  N  12  
B8W  N9     C4     SING  Y  N  13  
B8W  N9     C8     SING  Y  N  14  
B8W  P      OP1    DOUB  N  N  15  
B8W  N3     C4     DOUB  Y  N  16  
B8W  N3     C2     SING  Y  N  17  
B8W  C4     C5     SING  Y  N  18  
B8W  N2     C2     SING  N  N  19  
B8W  C8     N7     DOUB  Y  N  20  
B8W  C2     N1     DOUB  Y  N  21  
B8W  C5     N7     SING  Y  N  22  
B8W  C5     C6     DOUB  Y  N  23  
B8W  N1     C6     SING  Y  N  24  
B8W  C6     O6     SING  N  N  25  
B8W  O6     C61    SING  N  N  26  
B8W  N2     H1     SING  N  N  27  
B8W  N2     H2     SING  N  N  28  
B8W  C8     H3     SING  N  N  29  
B8W  "C1'"  H4     SING  N  N  30  
B8W  "C2'"  H5     SING  N  N  31  
B8W  "C3'"  H6     SING  N  N  32  
B8W  "C4'"  H7     SING  N  N  33  
B8W  "C5'"  H8     SING  N  N  34  
B8W  "C5'"  H9     SING  N  N  35  
B8W  C61    H10    SING  N  N  36  
B8W  C61    H11    SING  N  N  37  
B8W  C61    H12    SING  N  N  38  
B8W  "O2'"  H13    SING  N  N  39  
B8W  "O3'"  H14    SING  N  N  40  
B8W  OP2    H16    SING  N  N  41  
B8W  P      OP3    SING  N  N  42  
B8W  OP3    H15    SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B8W  InChI             InChI                 1.03   "InChI=1S/C11H16N5O8P/c1-22-9-5-8(14-11(12)15-9)16(3-13-5)10-7(18)6(17)4(24-10)2-23-25(19,20)21/h3-4,6-7,10,17-18H,2H2,1H3,(H2,12,14,15)(H2,19,20,21)/t4-,6-,7-,10-/m1/s1"  
B8W  InChIKey          InChI                 1.03   LGIVPNCELBIIMS-KQYNXXCUSA-N  
B8W  SMILES_CANONICAL  CACTVS                3.385  "COc1nc(N)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"  
B8W  SMILES            CACTVS                3.385  "COc1nc(N)nc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"  
B8W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "COc1c2c(nc(n1)N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"  
B8W  SMILES            "OpenEye OEToolkits"  2.0.6  "COc1c2c(nc(n1)N)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          B8W
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-methoxy-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B8W  "Create component"        2017-09-25  EBI   
B8W  "Initial release"         2018-01-24  RCSB  
B8W  "Modify one letter code"  2019-04-30  EBI   
##
