data_A1ILW
# 
_chem_comp.id                                    A1ILW 
_chem_comp.name                                  "(3~{S})-3-[[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-fluoranyl-phenyl]-propanoyl-amino]-3-(4-chlorophenyl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H34 Cl F N4 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-20 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        609.109 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ILW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GIT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ILW C1   C1  C  0 1 N N N N N N -2.682 -1.343  -2.655 5.255   0.856  3.650  C1   A1ILW 1  
A1ILW C2   C2  C  0 1 N N N N N N -2.411 -1.109  -1.182 5.242   1.680  2.361  C2   A1ILW 2  
A1ILW C3   C3  C  0 1 N N N N N N -2.613 0.329   -0.707 5.779   0.846  1.227  C3   A1ILW 3  
A1ILW O4   O1  O  0 1 N N N N N N -3.472 1.043   -1.215 6.909   0.407  1.279  O4   A1ILW 4  
A1ILW C7   C4  C  0 1 Y N N N N N -1.064 -0.939  1.854  2.609   0.299  0.048  C7   A1ILW 5  
A1ILW C8   C5  C  0 1 Y N N N N N -0.055 -1.678  2.446  1.339   0.838  -0.033 C8   A1ILW 6  
A1ILW C9   C6  C  0 1 Y N N N N N 1.259  -1.515  2.034  1.171   2.213  -0.095 C9   A1ILW 7  
A1ILW C10  C7  C  0 1 Y N N N N N 1.529  -0.598  1.034  2.280   3.050  -0.076 C10  A1ILW 8  
A1ILW C11  C8  C  0 1 Y N N N N N 0.553  0.150   0.428  3.550   2.512  0.005  C11  A1ILW 9  
A1ILW C14  C9  C  0 1 N N R N N N 2.106  -3.231  3.532  -1.174  1.824  -0.172 C14  A1ILW 10 
A1ILW C15  C10 C  0 1 N N N N N N 3.503  -3.598  4.035  -1.540  1.411  -1.620 C15  A1ILW 11 
A1ILW C16  C11 C  0 1 N N N N N N 3.949  -4.684  3.052  -3.016  0.962  -1.484 C16  A1ILW 12 
A1ILW C20  C12 C  0 1 N N N N N N 3.033  -7.762  3.777  -5.863  1.129  0.011  C20  A1ILW 13 
A1ILW C24  C13 C  0 1 N N N N N N 2.177  -10.761 5.759  -9.037  0.187  1.630  C24  A1ILW 14 
A1ILW O28  O2  O  0 1 N N N N N N 5.049  -12.229 6.775  -10.781 -1.376 -1.291 O28  A1ILW 15 
A1ILW C30  C14 C  0 1 N N S N N N -1.969 2.170   0.793  5.509   -0.265 -0.925 C30  A1ILW 16 
A1ILW C31  C15 C  0 1 N N N N N N -2.414 2.031   2.251  7.027   -0.109 -1.031 C31  A1ILW 17 
A1ILW C32  C16 C  0 1 N N N N N N -2.822 3.328   2.907  7.378   1.355  -1.097 C32  A1ILW 18 
A1ILW C35  C17 C  0 1 Y N N N N N -0.722 3.023   0.603  5.171   -1.703 -0.629 C35  A1ILW 19 
A1ILW N5   N1  N  0 1 N N N N N N -1.788 0.800   0.277  5.004   0.588  0.154  N5   A1ILW 20 
A1ILW C6   C18 C  0 1 Y N N N N N -0.764 -0.016  0.846  3.717   1.135  0.072  C6   A1ILW 21 
A1ILW F12  F1  F  0 1 N N N N N N 2.809  -0.448  0.634  2.116   4.390  -0.137 F12  A1ILW 22 
A1ILW O13  O3  O  0 1 N N N N N N 2.324  -2.203  2.524  -0.079  2.742  -0.175 O13  A1ILW 23 
A1ILW C17  C19 C  0 1 N N R N N N 2.683  -5.516  2.859  -3.623  1.956  -0.473 C17  A1ILW 24 
A1ILW C18  C20 C  0 1 N N N N N N 1.549  -4.498  2.867  -2.452  2.504  0.361  C18  A1ILW 25 
A1ILW N19  N2  N  0 1 N N N N N N 2.548  -6.512  3.918  -4.579  1.267  0.397  N19  A1ILW 26 
A1ILW O21  O4  O  0 1 N N N N N N 3.605  -8.147  2.755  -6.227  1.577  -1.059 O21  A1ILW 27 
A1ILW N22  N3  N  0 1 N N N N N N 2.840  -8.555  4.846  -6.742  0.494  0.811  N22  A1ILW 28 
A1ILW C23  C21 C  0 1 N N R N N N 2.999  -10.003 4.733  -8.138  0.344  0.391  C23  A1ILW 29 
A1ILW C25  C22 C  0 1 N N N N N N 2.891  -10.735 7.093  -10.419 -0.294 1.118  C25  A1ILW 30 
A1ILW S26  S1  S  0 1 N N N N N N 4.613  -10.866 6.662  -9.964  -1.546 -0.140 S26  A1ILW 31 
A1ILW O27  O5  O  0 1 N N N N N N 5.361  -9.849  7.340  -9.869  -2.822 0.478  O27  A1ILW 32 
A1ILW C29  C23 C  0 1 N N N N N N 4.438  -10.436 4.943  -8.283  -0.914 -0.487 C29  A1ILW 33 
A1ILW O33  O6  O  0 1 N N N N N N -3.093 4.320   2.222  6.501   2.192  -1.062 O33  A1ILW 34 
A1ILW N34  N4  N  0 1 N N N N N N -2.894 3.321   4.229  8.668   1.735  -1.194 N34  A1ILW 35 
A1ILW C36  C24 C  0 1 Y N N N N N 0.160  3.254   1.655  4.797   -2.550 -1.655 C36  A1ILW 36 
A1ILW C37  C25 C  0 1 Y N N N N N 1.374  3.885   1.448  4.487   -3.870 -1.384 C37  A1ILW 37 
A1ILW C38  C26 C  0 1 Y N N N N N 1.707  4.296   0.180  4.551   -4.342 -0.085 C38  A1ILW 38 
A1ILW C39  C27 C  0 1 Y N N N N N 0.855  4.096   -0.880 4.925   -3.494 0.942  C39  A1ILW 39 
A1ILW C40  C28 C  0 1 Y N N N N N -0.359 3.464   -0.662 5.240   -2.176 0.668  C40  A1ILW 40 
A1ILW CL41 CL1 CL 0 0 N N N N N N 3.271  5.015   -0.101 4.161   -5.999 0.256  CL41 A1ILW 41 
A1ILW H1B  H1  H  0 1 N N N N N N -2.510 -2.402  -2.896 4.631   -0.029 3.523  H1B  A1ILW 42 
A1ILW H1A  H2  H  0 1 N N N N N N -3.726 -1.081  -2.882 6.276   0.550  3.876  H1A  A1ILW 43 
A1ILW H1C  H3  H  0 1 N N N N N N -2.007 -0.716  -3.256 4.866   1.459  4.471  H1C  A1ILW 44 
A1ILW H2A  H4  H  0 1 N N N N N N -3.086 -1.757  -0.604 4.220   1.985  2.135  H2A  A1ILW 45 
A1ILW H2B  H5  H  0 1 N N N N N N -1.368 -1.392  -0.978 5.866   2.565  2.489  H2B  A1ILW 46 
A1ILW H7   H6  H  0 1 N N N N N N -2.087 -1.075  2.171  2.738   -0.771 0.097  H7   A1ILW 47 
A1ILW H8   H7  H  0 1 N N N N N N -0.291 -2.383  3.230  0.477   0.188  -0.048 H8   A1ILW 48 
A1ILW H11  H8  H  0 1 N N N N N N 0.800  0.851   -0.355 4.413   3.162  0.020  H11  A1ILW 49 
A1ILW H14  H9  H  0 1 N N N N N N 1.458  -2.890  4.353  -0.932  0.945  0.426  H14  A1ILW 50 
A1ILW H15B H10 H  0 0 N N N N N N 4.177  -2.730  3.998  -1.455  2.261  -2.297 H15B A1ILW 51 
A1ILW H15A H11 H  0 0 N N N N N N 3.463  -3.987  5.063  -0.914  0.585  -1.955 H15A A1ILW 52 
A1ILW H16B H12 H  0 0 N N N N N N 4.281  -4.243  2.100  -3.526  1.035  -2.444 H16B A1ILW 53 
A1ILW H16A H13 H  0 0 N N N N N N 4.761  -5.293  3.477  -3.071  -0.056 -1.099 H16A A1ILW 54 
A1ILW H24B H14 H  0 0 N N N N N N 1.190  -10.287 5.862  -8.612  -0.553 2.308  H24B A1ILW 55 
A1ILW H24A H15 H  0 0 N N N N N N 2.050  -11.803 5.431  -9.140  1.144  2.141  H24A A1ILW 56 
A1ILW H30  H16 H  0 1 N N N N N N -2.790 2.645   0.236  5.046   0.031  -1.867 H30  A1ILW 57 
A1ILW H31A H17 H  0 0 N N N N N N -3.273 1.344   2.284  7.500   -0.557 -0.158 H31A A1ILW 58 
A1ILW H31B H18 H  0 0 N N N N N N -1.579 1.603   2.826  7.381   -0.608 -1.933 H31B A1ILW 59 
A1ILW H17  H19 H  0 1 N N N N N N 2.720  -6.010  1.877  -4.118  2.771  -1.001 H17  A1ILW 60 
A1ILW H18B H20 H  0 0 N N N N N N 1.229  -4.278  1.838  -2.595  2.257  1.413  H18B A1ILW 61 
A1ILW H18A H21 H  0 0 N N N N N N 0.695  -4.885  3.442  -2.379  3.585  0.238  H18A A1ILW 62 
A1ILW H19  H22 H  0 1 N N N N N N 2.085  -6.261  4.768  -4.288  0.909  1.250  H19  A1ILW 63 
A1ILW H22  H23 H  0 1 N N N N N N 2.586  -8.151  5.725  -6.452  0.137  1.664  H22  A1ILW 64 
A1ILW H23  H24 H  0 1 N N N N N N 2.683  -10.323 3.729  -8.447  1.222  -0.176 H23  A1ILW 65 
A1ILW H25B H25 H  0 0 N N N N N N 2.692  -9.793  7.625  -10.995 -0.747 1.925  H25B A1ILW 66 
A1ILW H25A H26 H  0 0 N N N N N N 2.579  -11.583 7.720  -10.970 0.529  0.663  H25A A1ILW 67 
A1ILW H29B H27 H  0 0 N N N N N N 5.120  -9.611  4.689  -8.186  -0.653 -1.541 H29B A1ILW 68 
A1ILW H29A H28 H  0 0 N N N N N N 4.665  -11.308 4.311  -7.535  -1.657 -0.210 H29A A1ILW 69 
A1ILW H34A H29 H  0 0 N N N N N N -3.179 4.145   4.719  9.370   1.066  -1.222 H34A A1ILW 70 
A1ILW H34B H30 H  0 0 N N N N N N -2.664 2.492   4.738  8.894   2.677  -1.237 H34B A1ILW 71 
A1ILW H36  H31 H  0 1 N N N N N N -0.108 2.935   2.651  4.747   -2.181 -2.669 H36  A1ILW 72 
A1ILW H37  H32 H  0 1 N N N N N N 2.051  4.052   2.273  4.195   -4.532 -2.186 H37  A1ILW 73 
A1ILW H39  H33 H  0 1 N N N N N N 1.128  4.427   -1.871 4.975   -3.862 1.956  H39  A1ILW 74 
A1ILW H40  H34 H  0 1 N N N N N N -1.034 3.312   -1.491 5.532   -1.513 1.470  H40  A1ILW 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ILW C1  C2   SING N N 1  
A1ILW C2  C3   SING N N 2  
A1ILW C3  O4   DOUB N N 3  
A1ILW C3  N5   SING N N 4  
A1ILW N5  C6   SING N N 5  
A1ILW C6  C7   DOUB Y N 6  
A1ILW C7  C8   SING Y N 7  
A1ILW C8  C9   DOUB Y N 8  
A1ILW C9  C10  SING Y N 9  
A1ILW C10 C11  DOUB Y N 10 
A1ILW C10 F12  SING N N 11 
A1ILW C9  O13  SING N N 12 
A1ILW O13 C14  SING N N 13 
A1ILW C14 C15  SING N N 14 
A1ILW C15 C16  SING N N 15 
A1ILW C16 C17  SING N N 16 
A1ILW C17 C18  SING N N 17 
A1ILW C17 N19  SING N N 18 
A1ILW N19 C20  SING N N 19 
A1ILW C20 O21  DOUB N N 20 
A1ILW C20 N22  SING N N 21 
A1ILW N22 C23  SING N N 22 
A1ILW C23 C24  SING N N 23 
A1ILW C24 C25  SING N N 24 
A1ILW C25 S26  SING N N 25 
A1ILW S26 O27  DOUB N N 26 
A1ILW S26 O28  DOUB N N 27 
A1ILW S26 C29  SING N N 28 
A1ILW N5  C30  SING N N 29 
A1ILW C30 C31  SING N N 30 
A1ILW C31 C32  SING N N 31 
A1ILW C32 O33  DOUB N N 32 
A1ILW C32 N34  SING N N 33 
A1ILW C30 C35  SING N N 34 
A1ILW C35 C36  DOUB Y N 35 
A1ILW C36 C37  SING Y N 36 
A1ILW C37 C38  DOUB Y N 37 
A1ILW C38 C39  SING Y N 38 
A1ILW C39 C40  DOUB Y N 39 
A1ILW C38 CL41 SING N N 40 
A1ILW C11 C6   SING Y N 41 
A1ILW C18 C14  SING N N 42 
A1ILW C29 C23  SING N N 43 
A1ILW C40 C35  SING Y N 44 
A1ILW C1  H1B  SING N N 45 
A1ILW C1  H1A  SING N N 46 
A1ILW C1  H1C  SING N N 47 
A1ILW C2  H2A  SING N N 48 
A1ILW C2  H2B  SING N N 49 
A1ILW C7  H7   SING N N 50 
A1ILW C8  H8   SING N N 51 
A1ILW C11 H11  SING N N 52 
A1ILW C14 H14  SING N N 53 
A1ILW C15 H15B SING N N 54 
A1ILW C15 H15A SING N N 55 
A1ILW C16 H16B SING N N 56 
A1ILW C16 H16A SING N N 57 
A1ILW C24 H24B SING N N 58 
A1ILW C24 H24A SING N N 59 
A1ILW C30 H30  SING N N 60 
A1ILW C31 H31A SING N N 61 
A1ILW C31 H31B SING N N 62 
A1ILW C17 H17  SING N N 63 
A1ILW C18 H18B SING N N 64 
A1ILW C18 H18A SING N N 65 
A1ILW N19 H19  SING N N 66 
A1ILW N22 H22  SING N N 67 
A1ILW C23 H23  SING N N 68 
A1ILW C25 H25B SING N N 69 
A1ILW C25 H25A SING N N 70 
A1ILW C29 H29B SING N N 71 
A1ILW C29 H29A SING N N 72 
A1ILW N34 H34A SING N N 73 
A1ILW N34 H34B SING N N 74 
A1ILW C36 H36  SING N N 75 
A1ILW C37 H37  SING N N 76 
A1ILW C39 H39  SING N N 77 
A1ILW C40 H40  SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ILW InChI            InChI                1.06  "InChI=1S/C28H34ClFN4O6S/c1-2-27(36)34(24(15-26(31)35)17-3-5-18(29)6-4-17)21-8-10-25(23(30)14-21)40-22-9-7-19(13-22)32-28(37)33-20-11-12-41(38,39)16-20/h3-6,8,10,14,19-20,22,24H,2,7,9,11-13,15-16H2,1H3,(H2,31,35)(H2,32,33,37)/t19-,20-,22-,24-/m1/s1" 
A1ILW InChIKey         InChI                1.06  NLVAPRIBNJZHAA-QVHJCDIPSA-N                                                                                                                                                                                                                               
A1ILW SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N([C@@H](CC(N)=O)c1ccc(Cl)cc1)c2ccc(O[C@@H]3CC[C@H](C3)NC(=O)N[C@@H]4CC[S](=O)(=O)C4)c(F)c2"                                                                                                                                                      
A1ILW SMILES           CACTVS               3.385 "CCC(=O)N([CH](CC(N)=O)c1ccc(Cl)cc1)c2ccc(O[CH]3CC[CH](C3)NC(=O)N[CH]4CC[S](=O)(=O)C4)c(F)c2"                                                                                                                                                             
A1ILW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(c(c1)F)O[C@@H]2CC[C@H](C2)NC(=O)N[C@@H]3CCS(=O)(=O)C3)[C@@H](CC(=O)N)c4ccc(cc4)Cl"                                                                                                                                                        
A1ILW SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(c(c1)F)OC2CCC(C2)NC(=O)NC3CCS(=O)(=O)C3)C(CC(=O)N)c4ccc(cc4)Cl"                                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           A1ILW 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S})-3-[[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-fluoranyl-phenyl]-propanoyl-amino]-3-(4-chlorophenyl)propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ILW "Create component" 2024-08-20 PDBE 
A1ILW "Modify PCM"       2024-09-27 PDBE 
A1ILW "Initial release"  2024-12-18 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ILW 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
