data_9YW
#

_chem_comp.id                                   9YW
_chem_comp.name                                 "(alpha-D-glucopyranosyloxy)acetic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H14 O8"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "Glucosylglycolate; (alpha-D-glucosyloxy)acetic acid; (D-glucosyloxy)acetic acid; (glucosyloxy)acetic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-08-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       238.192
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9YW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5ONZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  9YW  Glucosylglycolate                   PDB  ?  
2  9YW  "(alpha-D-glucosyloxy)acetic acid"  PDB  ?  
3  9YW  "(D-glucosyloxy)acetic acid"        PDB  ?  
4  9YW  "(glucosyloxy)acetic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9YW  C10  C10  C  0  1  N  N  N  34.431  22.847  31.279  -3.295   0.168  -0.481  C10  9YW   1  
9YW  C6   C01  C  0  1  N  N  N  36.352  18.570  34.066   1.459  -2.674   0.152  C6   9YW   2  
9YW  C5   C02  C  0  1  N  N  R  35.853  20.022  34.057   0.985  -1.225   0.022  C5   9YW   3  
9YW  C4   C03  C  0  1  N  N  S  36.410  20.763  35.289   2.166  -0.335  -0.375  C4   9YW   4  
9YW  C3   C04  C  0  1  N  N  S  35.610  21.924  35.721   1.697   1.121  -0.444  C3   9YW   5  
9YW  C2   C05  C  0  1  N  N  R  34.187  21.589  35.785   1.097   1.518   0.908  C2   9YW   6  
9YW  C1   C06  C  0  1  N  N  S  33.710  21.166  34.400  -0.042   0.557   1.255  C1   9YW   7  
9YW  C09  C09  C  0  1  N  N  N  33.490  22.093  32.220  -2.281  -0.016   0.619  C09  9YW   8  
9YW  O5   O07  O  0  1  N  N  N  34.394  19.958  33.957   0.455  -0.783   1.273  O5   9YW   9  
9YW  O1   O08  O  0  1  N  N  N  34.026  22.205  33.511  -1.075   0.669   0.274  O1   9YW  10  
9YW  O11  O11  O  0  1  N  N  N  35.481  23.366  31.728  -4.511  -0.390  -0.373  O11  9YW  11  
9YW  O12  O12  O  0  1  N  N  N  34.168  22.949  30.056  -3.016   0.823  -1.457  O12  9YW  12  
9YW  O2   O13  O  0  1  N  N  N  33.424  22.668  36.262   0.590   2.852   0.833  O2   9YW  13  
9YW  O3   O14  O  0  1  N  N  N  36.050  22.395  36.969   2.809   1.968  -0.741  O3   9YW  14  
9YW  O4   O15  O  0  1  N  N  N  37.728  21.164  35.012   2.661  -0.739  -1.653  O4   9YW  15  
9YW  O6   O16  O  0  1  N  N  N  35.952  17.979  35.278   0.337  -3.522   0.407  O6   9YW  16  
9YW  H61  H1   H  0  1  N  N  N  35.914  18.020  33.220   1.944  -2.983  -0.774  H61  9YW  17  
9YW  H62  H2   H  0  1  N  N  N  37.449  18.552  33.986   2.168  -2.752   0.976  H62  9YW  18  
9YW  H5   H3   H  0  1  N  N  N  36.251  20.513  33.157   0.211  -1.164  -0.743  H5   9YW  19  
9YW  H4   H4   H  0  1  N  N  N  36.428  20.040  36.118   2.957  -0.428   0.369  H4   9YW  20  
9YW  H3   H5   H  0  1  N  N  N  35.740  22.721  34.974   0.940   1.224  -1.222  H3   9YW  21  
9YW  H2   H6   H  0  1  N  N  N  34.061  20.729  36.459   1.867   1.464   1.678  H2   9YW  22  
9YW  H1   H7   H  0  1  N  N  N  32.624  20.994  34.430  -0.445   0.808   2.236  H1   9YW  23  
9YW  H8   H8   H  0  1  N  N  N  32.485  22.540  32.188  -2.677   0.391   1.549  H8   9YW  24  
9YW  H9   H9   H  0  1  N  N  N  33.430  21.035  31.926  -2.072  -1.078   0.746  H9   9YW  25  
9YW  H10  H10  H  0  1  N  N  N  35.953  23.789  31.021  -5.128  -0.244  -1.104  H10  9YW  26  
9YW  HO2  H11  H  0  1  N  Y  N  33.734  22.919  37.124   0.195   3.170   1.656  HO2  9YW  27  
9YW  HO3  H12  H  0  1  N  Y  N  35.524  23.142  37.230   2.584   2.906  -0.801  HO3  9YW  28  
9YW  HO4  H13  H  0  1  N  Y  N  38.085  21.623  35.764   3.411  -0.217  -1.967  HO4  9YW  29  
9YW  HO6  H14  H  0  1  N  Y  N  36.251  17.078  35.305   0.563  -4.457   0.501  HO6  9YW  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9YW  O12  C10  DOUB  N  N   1  
9YW  C10  O11  SING  N  N   2  
9YW  C10  C09  SING  N  N   3  
9YW  C09  O1   SING  N  N   4  
9YW  O1   C1   SING  N  N   5  
9YW  O5   C5   SING  N  N   6  
9YW  O5   C1   SING  N  N   7  
9YW  C5   C6   SING  N  N   8  
9YW  C5   C4   SING  N  N   9  
9YW  C6   O6   SING  N  N  10  
9YW  C1   C2   SING  N  N  11  
9YW  O4   C4   SING  N  N  12  
9YW  C4   C3   SING  N  N  13  
9YW  C3   C2   SING  N  N  14  
9YW  C3   O3   SING  N  N  15  
9YW  C2   O2   SING  N  N  16  
9YW  C6   H61  SING  N  N  17  
9YW  C6   H62  SING  N  N  18  
9YW  C5   H5   SING  N  N  19  
9YW  C4   H4   SING  N  N  20  
9YW  C3   H3   SING  N  N  21  
9YW  C2   H2   SING  N  N  22  
9YW  C1   H1   SING  N  N  23  
9YW  C09  H8   SING  N  N  24  
9YW  C09  H9   SING  N  N  25  
9YW  O11  H10  SING  N  N  26  
9YW  O2   HO2  SING  N  N  27  
9YW  O3   HO3  SING  N  N  28  
9YW  O4   HO4  SING  N  N  29  
9YW  O6   HO6  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9YW  InChI             InChI                 1.03   "InChI=1S/C8H14O8/c9-1-3-5(12)6(13)7(14)8(16-3)15-2-4(10)11/h3,5-9,12-14H,1-2H2,(H,10,11)/t3-,5-,6+,7-,8+/m1/s1"  
9YW  InChIKey          InChI                 1.03   CEXKKLVRUODYGY-VDUCJHRSSA-N  
9YW  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](OCC(O)=O)[C@H](O)[C@@H](O)[C@@H]1O"  
9YW  SMILES            CACTVS                3.385  "OC[CH]1O[CH](OCC(O)=O)[CH](O)[CH](O)[CH]1O"  
9YW  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OCC(=O)O)O)O)O)O"  
9YW  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)OCC(=O)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          9YW
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "2-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyethanoic acid"
#
_pdbx_chem_comp_related.comp_id            9YW
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  9YW  C6   GLC  C6   "Carbohydrate core"  
 2  9YW  C5   GLC  C5   "Carbohydrate core"  
 3  9YW  C4   GLC  C4   "Carbohydrate core"  
 4  9YW  C3   GLC  C3   "Carbohydrate core"  
 5  9YW  C2   GLC  C2   "Carbohydrate core"  
 6  9YW  C1   GLC  C1   "Carbohydrate core"  
 7  9YW  O5   GLC  O5   "Carbohydrate core"  
 8  9YW  O1   GLC  O1   "Carbohydrate core"  
 9  9YW  O2   GLC  O2   "Carbohydrate core"  
10  9YW  O3   GLC  O3   "Carbohydrate core"  
11  9YW  O4   GLC  O4   "Carbohydrate core"  
12  9YW  O6   GLC  O6   "Carbohydrate core"  
13  9YW  H61  GLC  H61  "Carbohydrate core"  
14  9YW  HO2  GLC  HO2  "Carbohydrate core"  
15  9YW  HO3  GLC  HO3  "Carbohydrate core"  
16  9YW  HO4  GLC  HO4  "Carbohydrate core"  
17  9YW  HO6  GLC  HO6  "Carbohydrate core"  
18  9YW  H62  GLC  H62  "Carbohydrate core"  
19  9YW  H5   GLC  H5   "Carbohydrate core"  
20  9YW  H4   GLC  H4   "Carbohydrate core"  
21  9YW  H3   GLC  H3   "Carbohydrate core"  
22  9YW  H2   GLC  H2   "Carbohydrate core"  
23  9YW  H1   GLC  H1   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9YW  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9YW  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9YW  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
9YW  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9YW  "Create component"          2017-08-05  EBI   
9YW  "Initial release"           2018-08-29  RCSB  
9YW  "Other modification"        2020-07-03  RCSB  
9YW  "Modify parent residue"     2020-07-17  RCSB  
9YW  "Modify name"               2020-07-17  RCSB  
9YW  "Modify synonyms"           2020-07-17  RCSB  
9YW  "Modify internal type"      2020-07-17  RCSB  
9YW  "Modify linking type"       2020-07-17  RCSB  
9YW  "Modify atom id"            2020-07-17  RCSB  
9YW  "Modify component atom id"  2020-07-17  RCSB  
9YW  "Modify leaving atom flag"  2020-07-17  RCSB  
##
