data_6NW
# 
_chem_comp.id                                    6NW 
_chem_comp.name                                  "2'-O-methyl-5'-O-thiophosphonoadenosine" 
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N5 O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-11 
_chem_comp.pdbx_modified_date                    2016-07-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.313 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6NW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JS2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6NW P      P1    P 0 1 N N N -23.527 31.189 33.282 -4.550 1.165  -0.011 P      6NW 1  
6NW SP1    S1    S 0 1 N N N -22.273 29.695 33.465 -6.129 -0.246 0.094  SP1    6NW 2  
6NW OP2    O1    O 0 1 N N N -24.822 30.574 32.810 -4.321 1.749  1.329  OP2    6NW 3  
6NW "O5'"  O2    O 0 1 N N N -23.678 31.769 34.643 -3.208 0.432  -0.514 "O5'"  6NW 4  
6NW "C5'"  C1    C 0 1 N N N -24.269 30.882 35.470 -2.544 -0.582 0.243  "C5'"  6NW 5  
6NW "C4'"  C2    C 0 1 N N R -24.629 31.660 36.769 -1.308 -1.062 -0.520 "C4'"  6NW 6  
6NW "O4'"  O3    O 0 1 N N N -25.254 32.733 36.518 -0.341 -0.001 -0.601 "O4'"  6NW 7  
6NW "C3'"  C3    C 0 1 N N R -25.584 30.783 37.494 -0.646 -2.229 0.237  "C3'"  6NW 8  
6NW "O3'"  O4    O 0 1 N N N -24.860 30.230 38.418 -0.618 -3.402 -0.578 "O3'"  6NW 9  
6NW "C2'"  C4    C 0 1 N N R -26.678 31.731 37.987 0.793  -1.731 0.518  "C2'"  6NW 10 
6NW "O2'"  O5    O 0 1 N N N -26.222 32.358 39.220 1.744  -2.778 0.315  "O2'"  6NW 11 
6NW "C1'"  C5    C 0 1 N N R -26.744 32.598 37.079 0.964  -0.616 -0.545 "C1'"  6NW 12 
6NW "CM'"  C6    C 0 1 N N N -27.267 32.963 39.874 2.033  -3.536 1.492  "CM'"  6NW 13 
6NW N9     N1    N 0 1 Y N N -27.526 32.049 36.014 1.973  0.355  -0.116 N9     6NW 14 
6NW C8     C7    C 0 1 Y N N -27.029 31.397 34.961 1.747  1.488  0.609  C8     6NW 15 
6NW N7     N2    N 0 1 Y N N -28.012 31.005 34.165 2.867  2.117  0.813  N7     6NW 16 
6NW C5     C8    C 0 1 Y N N -29.218 31.432 34.736 3.882  1.430  0.234  C5     6NW 17 
6NW C6     C9    C 0 1 Y N N -30.623 31.340 34.404 5.270  1.620  0.128  C6     6NW 18 
6NW N6     N3    N 0 1 N N N -30.990 30.664 33.198 5.879  2.723  0.702  N6     6NW 19 
6NW N1     N4    N 0 1 Y N N -31.574 31.905 35.240 5.984  0.717  -0.535 N1     6NW 20 
6NW C2     C10   C 0 1 Y N N -31.264 32.530 36.349 5.411  -0.338 -1.085 C2     6NW 21 
6NW N3     N5    N 0 1 Y N N -29.966 32.636 36.698 4.115  -0.557 -1.012 N3     6NW 22 
6NW C4     C11   C 0 1 Y N N -28.935 32.088 35.896 3.321  0.289  -0.364 C4     6NW 23 
6NW H1     H1    H 0 1 N N N -23.006 28.682 33.111 -7.168 0.494  0.520  H1     6NW 24 
6NW "H5''" H2    H 0 0 N N N -25.180 30.477 35.005 -2.240 -0.174 1.207  "H5''" 6NW 25 
6NW "H4'"  H3    H 0 1 N N N -23.718 31.806 37.368 -1.593 -1.381 -1.523 "H4'"  6NW 26 
6NW "H3'"  H4    H 0 1 N N N -26.023 30.052 36.799 -1.172 -2.427 1.170  "H3'"  6NW 27 
6NW "HO3'" H5    H 0 0 N Y N -25.400 29.645 38.936 -1.494 -3.725 -0.834 "HO3'" 6NW 28 
6NW "H2'"  H6    H 0 1 N N N -27.611 31.172 38.152 0.874  -1.324 1.526  "H2'"  6NW 29 
6NW H7     H7    H 0 1 N N N -27.112 33.585 37.396 1.229  -1.044 -1.512 H7     6NW 30 
6NW H11    H8    H 0 1 N N N -26.900 33.429 40.800 2.440  -2.877 2.258  H11    6NW 31 
6NW H9     H9    H 0 1 N N N -27.708 33.734 39.225 1.117  -4.000 1.860  H9     6NW 32 
6NW H10    H10   H 0 1 N N N -28.031 32.210 40.120 2.763  -4.311 1.255  H10    6NW 33 
6NW H8     H11   H 0 1 N N N -25.979 31.216 34.784 0.780  1.814  0.961  H8     6NW 34 
6NW H61    H12   H 0 1 N N N -31.984 30.683 33.094 5.347  3.375  1.184  H61    6NW 35 
6NW H62    H13   H 0 1 N N N -30.565 31.121 32.417 6.839  2.843  0.622  H62    6NW 36 
6NW H2     H14   H 0 1 N N N -32.036 32.954 36.974 6.029  -1.048 -1.615 H2     6NW 37 
6NW "H5'"  "H5'" H 0 1 N N N -23.578 30.058 35.700 -3.223 -1.420 0.401  "H5'"  6NW 38 
6NW OP3    OP3   O 0 1 N Y N -23.254 32.445 32.415 -4.943 2.334  -1.046 OP3    6NW 39 
6NW HOP3   HOP3  H 0 0 N Y N -23.955 32.552 31.782 -5.108 2.023  -1.947 HOP3   6NW 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6NW P     SP1    SING N N 1  
6NW P     OP2    DOUB N N 2  
6NW P     "O5'"  SING N N 3  
6NW "O5'" "C5'"  SING N N 4  
6NW "C5'" "C4'"  SING N N 5  
6NW "C4'" "O4'"  SING N N 6  
6NW "C4'" "C3'"  SING N N 7  
6NW "O4'" "C1'"  SING N N 8  
6NW "C3'" "O3'"  SING N N 9  
6NW "C3'" "C2'"  SING N N 10 
6NW "C2'" "O2'"  SING N N 11 
6NW "C2'" "C1'"  SING N N 12 
6NW "O2'" "CM'"  SING N N 13 
6NW "C1'" N9     SING N N 14 
6NW N9    C8     SING Y N 15 
6NW N9    C4     SING Y N 16 
6NW C8    N7     DOUB Y N 17 
6NW N7    C5     SING Y N 18 
6NW C5    C6     DOUB Y N 19 
6NW C5    C4     SING Y N 20 
6NW C6    N6     SING N N 21 
6NW C6    N1     SING Y N 22 
6NW N1    C2     DOUB Y N 23 
6NW C2    N3     SING Y N 24 
6NW N3    C4     DOUB Y N 25 
6NW SP1   H1     SING N N 26 
6NW "C5'" "H5''" SING N N 27 
6NW "C4'" "H4'"  SING N N 28 
6NW "C3'" "H3'"  SING N N 29 
6NW "O3'" "HO3'" SING N N 30 
6NW "C2'" "H2'"  SING N N 31 
6NW "C1'" H7     SING N N 32 
6NW "CM'" H11    SING N N 33 
6NW "CM'" H9     SING N N 34 
6NW "CM'" H10    SING N N 35 
6NW C8    H8     SING N N 36 
6NW N6    H61    SING N N 37 
6NW N6    H62    SING N N 38 
6NW C2    H2     SING N N 39 
6NW "C5'" "H5'"  SING N N 40 
6NW P     OP3    SING N N 41 
6NW OP3   HOP3   SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6NW SMILES           ACDLabs              12.01 "P(S)(=O)(OCC1OC(C(C1O)OC)n2cnc3c(N)ncnc23)O"                                                                                                                         
6NW InChI            InChI                1.03  "InChI=1S/C11H16N5O6PS/c1-20-8-7(17)5(2-21-23(18,19)24)22-11(8)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17H,2H2,1H3,(H2,12,13,14)(H2,18,19,24)/t5-,7-,8-,11-/m1/s1" 
6NW InChIKey         InChI                1.03  OXNLMRLCWQEYRW-IOSLPCCCSA-N                                                                                                                                           
6NW SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(S)=O)O[C@H]1n2cnc3c(N)ncnc23"                                                                                                       
6NW SMILES           CACTVS               3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(S)=O)O[CH]1n2cnc3c(N)ncnc23"                                                                                                             
6NW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)COP(=O)(O)S)O"                                                                                                           
6NW SMILES           "OpenEye OEToolkits" 2.0.4 "COC1C(C(OC1n2cnc3c2ncnc3N)COP(=O)(O)S)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6NW "SYSTEMATIC NAME" ACDLabs              12.01 "2'-O-methyl-5'-O-thiophosphonoadenosine"                                                                            
6NW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6NW "Create component" 2016-05-11 RCSB 
6NW "Initial release"  2016-07-20 RCSB 
# 
