data_5YW
# 
_chem_comp.id                                    5YW 
_chem_comp.name                                  "N-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H26 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        490.552 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5YW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7WOX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5YW C1  C1  C 0 1 N N N N N N 17.124 25.803 4.550  2.465   6.871  1.636  C1  5YW 1  
5YW C2  C2  C 0 1 N N N N N N 18.099 26.031 5.733  2.251   5.715  0.658  C2  5YW 2  
5YW C3  C3  C 0 1 N N N N N N 18.159 24.755 6.539  0.892   5.065  0.926  C3  5YW 3  
5YW O1  O1  O 0 1 N N N N N N 16.811 24.355 6.889  0.692   3.984  0.012  O1  5YW 4  
5YW C4  C4  C 0 1 Y N N N N N 16.675 23.220 7.651  -0.476  3.296  0.117  C4  5YW 5  
5YW C5  C5  C 0 1 Y N N N N N 17.763 22.432 8.012  -1.408  3.654  1.079  C5  5YW 6  
5YW C6  C6  C 0 1 Y N N N N N 17.556 21.304 8.774  -2.594  2.955  1.186  C6  5YW 7  
5YW C7  C7  C 0 1 Y N N N N N 16.264 20.941 9.182  -2.854  1.893  0.329  C7  5YW 8  
5YW N1  N1  N 0 1 N N N N N N 16.255 19.715 9.921  -4.056  1.185  0.437  N1  5YW 9  
5YW C8  C8  C 0 1 N N N N N N 17.363 18.900 9.992  -4.087  -0.135 0.167  C8  5YW 10 
5YW O2  O2  O 0 1 N N N N N N 18.403 19.120 9.317  -3.053  -0.731 -0.076 O2  5YW 11 
5YW C9  C9  C 0 1 N N N N N N 17.383 17.874 11.065 -5.335  -0.838 0.166  C9  5YW 12 
5YW C10 C10 C 0 1 N N N N N N 18.333 18.040 12.101 -6.358  -1.413 0.166  C10 5YW 13 
5YW C11 C11 C 0 1 Y N N N N N 18.285 17.093 13.209 -7.606  -2.115 0.165  C11 5YW 14 
5YW C12 C12 C 0 1 Y N N N N N 19.444 16.560 13.801 -8.796  -1.433 0.438  C12 5YW 15 
5YW C13 C13 C 0 1 Y N N N N N 19.342 15.659 14.849 -9.994  -2.116 0.436  C13 5YW 16 
5YW C14 C14 C 0 1 Y N N N N N 18.078 15.265 15.293 -10.020 -3.473 0.164  C14 5YW 17 
5YW C15 C15 C 0 1 Y N N N N N 16.919 15.771 14.697 -8.847  -4.155 -0.106 C15 5YW 18 
5YW C16 C16 C 0 1 Y N N N N N 17.023 16.684 13.657 -7.642  -3.485 -0.114 C16 5YW 19 
5YW C17 C17 C 0 1 Y N N N N N 15.168 21.729 8.794  -1.919  1.535  -0.634 C17 5YW 20 
5YW C18 C18 C 0 1 Y N N N N N 15.367 22.883 8.023  -0.736  2.239  -0.743 C18 5YW 21 
5YW C19 C19 C 0 1 N N N N N N 14.211 23.753 7.606  0.275   1.854  -1.792 C19 5YW 22 
5YW N2  N2  N 0 1 N N N N N N 13.487 24.304 8.765  1.332   1.047  -1.179 N2  5YW 23 
5YW C20 C20 C 0 1 N N N N N N 13.944 25.341 9.503  2.351   0.587  -1.932 C20 5YW 24 
5YW O3  O3  O 0 1 N N N N N N 15.173 25.513 9.739  2.393   0.842  -3.119 O3  5YW 25 
5YW C21 C21 C 0 1 Y N N N N N 12.888 26.354 9.927  3.418   -0.228 -1.313 C21 5YW 26 
5YW C22 C22 C 0 1 Y N N N N N 11.538 26.154 9.556  3.368   -0.526 0.051  C22 5YW 27 
5YW C23 C23 C 0 1 Y N N N N N 10.551 27.089 9.920  4.362   -1.286 0.626  C23 5YW 28 
5YW C24 C24 C 0 1 Y N N N N N 10.901 28.237 10.659 5.419   -1.757 -0.152 C24 5YW 29 
5YW C25 C25 C 0 1 Y N N N N N 9.860  29.250 11.000 6.489   -2.575 0.469  C25 5YW 30 
5YW N3  N3  N 0 1 Y N N N N N 8.581  28.954 10.629 6.422   -2.853 1.763  N3  5YW 31 
5YW C26 C26 C 0 1 Y N N N N N 7.659  29.908 10.915 7.359   -3.580 2.348  C26 5YW 32 
5YW C27 C27 C 0 1 Y N N N N N 7.994  31.138 11.541 8.420   -4.052 1.589  C27 5YW 33 
5YW C28 C28 C 0 1 Y N N N N N 9.348  31.345 11.866 8.459   -3.743 0.238  C28 5YW 34 
5YW N4  N4  N 0 1 Y N N N N N 10.299 30.418 11.586 7.487   -3.015 -0.285 N4  5YW 35 
5YW C29 C29 C 0 1 Y N N N N N 12.252 28.465 11.008 5.470   -1.460 -1.514 C29 5YW 36 
5YW C30 C30 C 0 1 Y N N N N N 13.237 27.530 10.638 4.474   -0.705 -2.092 C30 5YW 37 
5YW H1  H1  H 0 1 N N N N N N 17.061 26.719 3.944  3.433   7.334  1.445  H1  5YW 38 
5YW H2  H2  H 0 1 N N N N N N 17.492 24.976 3.926  1.676   7.611  1.503  H2  5YW 39 
5YW H3  H3  H 0 1 N N N N N N 16.127 25.552 4.940  2.439   6.493  2.658  H3  5YW 40 
5YW H4  H4  H 0 1 N N N N N N 19.100 26.278 5.350  2.277   6.093  -0.364 H4  5YW 41 
5YW H5  H5  H 0 1 N N N N N N 17.734 26.855 6.364  3.040   4.975  0.792  H5  5YW 42 
5YW H6  H6  H 0 1 N N N N N N 18.635 23.964 5.942  0.866   4.686  1.948  H6  5YW 43 
5YW H7  H7  H 0 1 N N N N N N 18.743 24.925 7.455  0.103   5.805  0.792  H7  5YW 44 
5YW H8  H8  H 0 1 N N N N N N 18.760 22.702 7.698  -1.206  4.480  1.746  H8  5YW 45 
5YW H9  H9  H 0 1 N N N N N N 18.398 20.692 9.061  -3.320  3.234  1.936  H9  5YW 46 
5YW H10 H10 H 0 1 N N N N N N 15.420 19.442 10.399 -4.867  1.644  0.705  H10 5YW 47 
5YW H13 H13 H 0 1 N N N N N N 20.418 16.854 13.437 -8.777  -0.375 0.651  H13 5YW 48 
5YW H14 H14 H 0 1 N N N N N N 20.232 15.265 15.318 -10.914 -1.591 0.646  H14 5YW 49 
5YW H15 H15 H 0 1 N N N N N N 17.995 14.560 16.107 -10.962 -4.003 0.164  H15 5YW 50 
5YW H16 H16 H 0 1 N N N N N N 15.947 15.453 15.044 -8.875  -5.214 -0.317 H16 5YW 51 
5YW H17 H17 H 0 1 N N N N N N 16.131 17.079 13.193 -6.727  -4.017 -0.331 H17 5YW 52 
5YW H18 H18 H 0 1 N N N N N N 14.169 21.445 9.090  -2.120  0.709  -1.300 H18 5YW 53 
5YW H19 H19 H 0 1 N N N N N N 14.595 24.586 6.999  -0.216  1.276  -2.575 H19 5YW 54 
5YW H20 H20 H 0 1 N N N N N N 13.513 23.152 7.005  0.710   2.755  -2.225 H20 5YW 55 
5YW H21 H21 H 0 1 N N N N N N 12.613 23.890 9.019  1.299   0.843  -0.231 H21 5YW 56 
5YW H22 H22 H 0 1 N N N N N N 11.262 25.277 8.989  2.549   -0.161 0.653  H22 5YW 57 
5YW H23 H23 H 0 1 N N N N N N 9.523  26.926 9.632  4.323   -1.517 1.681  H23 5YW 58 
5YW H24 H24 H 0 1 N N N N N N 6.627  29.724 10.656 7.300   -3.803 3.403  H24 5YW 59 
5YW H25 H25 H 0 1 N N N N N N 7.242  31.882 11.758 9.200   -4.648 2.041  H25 5YW 60 
5YW H26 H26 H 0 1 N N N N N N 9.638  32.266 12.351 9.271   -4.095 -0.381 H26 5YW 61 
5YW H27 H27 H 0 1 N N N N N N 12.527 29.354 11.557 6.289   -1.826 -2.116 H27 5YW 62 
5YW H28 H28 H 0 1 N N N N N N 14.270 27.710 10.898 4.512   -0.478 -3.148 H28 5YW 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5YW C1  C2  SING N N 1  
5YW C2  C3  SING N N 2  
5YW C3  O1  SING N N 3  
5YW O1  C4  SING N N 4  
5YW C19 C18 SING N N 5  
5YW C19 N2  SING N N 6  
5YW C4  C5  DOUB Y N 7  
5YW C4  C18 SING Y N 8  
5YW C5  C6  SING Y N 9  
5YW C18 C17 DOUB Y N 10 
5YW N2  C20 SING N N 11 
5YW C6  C7  DOUB Y N 12 
5YW C17 C7  SING Y N 13 
5YW C7  N1  SING N N 14 
5YW O2  C8  DOUB N N 15 
5YW C20 O3  DOUB N N 16 
5YW C20 C21 SING N N 17 
5YW C22 C23 DOUB Y N 18 
5YW C22 C21 SING Y N 19 
5YW C23 C24 SING Y N 20 
5YW N1  C8  SING N N 21 
5YW C21 C30 DOUB Y N 22 
5YW C8  C9  SING N N 23 
5YW N3  C26 DOUB Y N 24 
5YW N3  C25 SING Y N 25 
5YW C30 C29 SING Y N 26 
5YW C24 C25 SING N N 27 
5YW C24 C29 DOUB Y N 28 
5YW C26 C27 SING Y N 29 
5YW C25 N4  DOUB Y N 30 
5YW C9  C10 TRIP N N 31 
5YW C27 C28 DOUB Y N 32 
5YW N4  C28 SING Y N 33 
5YW C10 C11 SING N N 34 
5YW C11 C16 DOUB Y N 35 
5YW C11 C12 SING Y N 36 
5YW C16 C15 SING Y N 37 
5YW C12 C13 DOUB Y N 38 
5YW C15 C14 DOUB Y N 39 
5YW C13 C14 SING Y N 40 
5YW C1  H1  SING N N 41 
5YW C1  H2  SING N N 42 
5YW C1  H3  SING N N 43 
5YW C2  H4  SING N N 44 
5YW C2  H5  SING N N 45 
5YW C3  H6  SING N N 46 
5YW C3  H7  SING N N 47 
5YW C5  H8  SING N N 48 
5YW C6  H9  SING N N 49 
5YW N1  H10 SING N N 50 
5YW C12 H13 SING N N 51 
5YW C13 H14 SING N N 52 
5YW C14 H15 SING N N 53 
5YW C15 H16 SING N N 54 
5YW C16 H17 SING N N 55 
5YW C17 H18 SING N N 56 
5YW C19 H19 SING N N 57 
5YW C19 H20 SING N N 58 
5YW N2  H21 SING N N 59 
5YW C22 H22 SING N N 60 
5YW C23 H23 SING N N 61 
5YW C26 H24 SING N N 62 
5YW C27 H25 SING N N 63 
5YW C28 H26 SING N N 64 
5YW C29 H27 SING N N 65 
5YW C30 H28 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5YW InChI            InChI                1.03  "InChI=1S/C30H26N4O3/c1-2-19-37-27-15-14-26(34-28(35)16-9-22-7-4-3-5-8-22)20-25(27)21-33-30(36)24-12-10-23(11-13-24)29-31-17-6-18-32-29/h3-8,10-15,17-18,20H,2,19,21H2,1H3,(H,33,36)(H,34,35)" 
5YW InChIKey         InChI                1.03  LLWADQIEAQTMON-UHFFFAOYSA-N                                                                                                                                                                    
5YW SMILES_CANONICAL CACTVS               3.385 "CCCOc1ccc(NC(=O)C#Cc2ccccc2)cc1CNC(=O)c3ccc(cc3)c4ncccn4"                                                                                                                                     
5YW SMILES           CACTVS               3.385 "CCCOc1ccc(NC(=O)C#Cc2ccccc2)cc1CNC(=O)c3ccc(cc3)c4ncccn4"                                                                                                                                     
5YW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)c3ncccn3)NC(=O)C#Cc4ccccc4"                                                                                                                                     
5YW SMILES           "OpenEye OEToolkits" 2.0.7 "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)c3ncccn3)NC(=O)C#Cc4ccccc4"                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           5YW 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5YW "Create component" 2022-02-04 PDBJ 
5YW "Initial release"  2022-04-13 RCSB 
5YW "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5YW 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C10 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
