data_42W
#

_chem_comp.id                                   42W
_chem_comp.name                                 "(E)-1-benzyl-5-((1-methyl-5-oxo-2-thioxoimidazolidin-4-ylidene)methyl)pyridin-2(1H)-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H15 N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1-benzyl-5-[(E)-(1-methyl-5-oxo-2-thioxoimidazolidin-4-ylidene)methyl]pyridin-2(1H)-one"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-01-23
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.385
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    42W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4XS3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
42W  C10  C1   C  0  1  N  N  N  -1.950  -33.448  -14.689   1.547   2.899   0.687  C10  42W   1  
42W  C13  C2   C  0  1  N  N  N  -0.775  -31.344  -15.013  -0.085   1.182   1.026  C13  42W   2  
42W  C15  C3   C  0  1  N  N  N   3.437  -29.649  -13.794  -4.295  -0.593   0.266  C15  42W   3  
42W  C01  C4   C  0  1  N  N  N   4.313  -31.707  -12.662  -4.205  -0.373  -2.214  C01  42W   4  
42W  N01  N1   N  0  1  N  N  N   3.373  -30.968  -13.475  -3.669  -0.215  -0.859  N01  42W   5  
42W  C02  C5   C  0  1  N  N  N  -4.141  -30.644  -13.596   2.445  -0.080  -1.375  C02  42W   6  
42W  C03  C6   C  0  1  Y  N  N  -5.812  -30.079  -15.448   3.109  -2.121  -0.088  C03  42W   7  
42W  C04  C7   C  0  1  Y  N  N  -6.400  -29.170  -16.332   4.043  -2.871   0.602  C04  42W   8  
42W  C05  C8   C  0  1  Y  N  N  -5.965  -27.802  -16.337   5.330  -2.392   0.763  C05  42W   9  
42W  C06  C9   C  0  1  Y  N  N  -4.952  -27.357  -15.480   5.683  -1.165   0.234  C06  42W  10  
42W  C07  C10  C  0  1  Y  N  N  -4.367  -28.271  -14.599   4.749  -0.416  -0.456  C07  42W  11  
42W  C08  C11  C  0  1  Y  N  N  -4.789  -29.647  -14.582   3.461  -0.894  -0.617  C08  42W  12  
42W  N02  N2   N  0  1  N  N  N  -3.029  -31.359  -14.109   1.733   0.801  -0.445  N02  42W  13  
42W  O01  O1   O  0  1  N  N  N  -4.072  -33.349  -13.828   3.233   2.406  -0.758  O01  42W  14  
42W  C09  C12  C  0  1  N  N  N  -0.793  -32.740  -15.115   0.407   2.483   1.299  C09  42W  15  
42W  C11  C13  C  0  1  N  N  N  -3.066  -32.727  -14.187   2.213   2.034  -0.202  C11  42W  16  
42W  C12  C14  C  0  1  N  N  N  -1.893  -30.667  -14.508   0.602   0.366   0.145  C12  42W  17  
42W  C14  C15  C  0  1  N  N  N   0.477  -30.542  -15.476  -1.317   0.707   1.667  C14  42W  18  
42W  O    O2   O  0  1  N  N  N   1.928  -32.641  -13.961  -1.656   0.780  -1.340  O    42W  19  
42W  S    S1   S  0  1  N  N  N   4.635  -28.559  -13.310  -5.838  -1.331   0.317  S    42W  20  
42W  N    N3   N  0  1  N  N  N   2.376  -29.344  -14.570  -3.546  -0.320   1.349  N    42W  21  
42W  C16  C16  C  0  1  N  N  N   1.643  -30.472  -14.733  -2.355   0.274   0.907  C16  42W  22  
42W  C    C17  C  0  1  N  N  N   2.271  -31.483  -14.051  -2.474   0.331  -0.557  C    42W  23  
42W  H1   H1   H  0  1  N  N  N  -1.980  -34.526  -14.747   1.937   3.888   0.877  H1   42W  24  
42W  H2   H2   H  0  1  N  N  N   5.115  -31.034  -12.324  -5.186  -0.844  -2.164  H2   42W  25  
42W  H3   H3   H  0  1  N  N  N   3.792  -32.124  -11.788  -4.294   0.605  -2.685  H3   42W  26  
42W  H4   H4   H  0  1  N  N  N   4.747  -32.525  -13.256  -3.531  -0.998  -2.800  H4   42W  27  
42W  H5   H5   H  0  1  N  N  N  -3.806  -30.081  -12.712   2.950   0.522  -2.130  H5   42W  28  
42W  H6   H6   H  0  1  N  N  N  -4.907  -31.374  -13.297   1.733  -0.748  -1.860  H6   42W  29  
42W  H7   H7   H  0  1  N  N  N  -6.141  -31.108  -15.429   2.105  -2.497  -0.218  H7   42W  30  
42W  H8   H8   H  0  1  N  N  N  -7.177  -29.495  -17.008   3.768  -3.830   1.015  H8   42W  31  
42W  H9   H9   H  0  1  N  N  N  -6.429  -27.102  -17.016   6.060  -2.978   1.303  H9   42W  32  
42W  H10  H10  H  0  1  N  N  N  -4.628  -26.327  -15.499   6.688  -0.791   0.361  H10  42W  33  
42W  H11  H11  H  0  1  N  N  N  -3.591  -27.941  -13.924   5.024   0.543  -0.869  H11  42W  34  
42W  H12  H12  H  0  1  N  N  N   0.060  -33.271  -15.511  -0.116   3.134   1.984  H12  42W  35  
42W  H13  H13  H  0  1  N  N  N  -1.871  -29.590  -14.428   0.233  -0.626  -0.068  H13  42W  36  
42W  H14  H14  H  0  1  N  N  N   0.434  -30.017  -16.419  -1.398   0.701   2.744  H14  42W  37  
42W  H15  H15  H  0  1  N  N  N   2.168  -28.445  -14.956  -3.786  -0.501   2.271  H15  42W  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
42W  C05  C04  DOUB  Y  N   1  
42W  C05  C06  SING  Y  N   2  
42W  C04  C03  SING  Y  N   3  
42W  C06  C07  DOUB  Y  N   4  
42W  C14  C13  SING  N  N   5  
42W  C14  C16  DOUB  N  E   6  
42W  C03  C08  DOUB  Y  N   7  
42W  C09  C13  SING  N  N   8  
42W  C09  C10  DOUB  N  N   9  
42W  C13  C12  DOUB  N  N  10  
42W  C16  N    SING  N  N  11  
42W  C16  C    SING  N  N  12  
42W  C10  C11  SING  N  N  13  
42W  C07  C08  SING  Y  N  14  
42W  C08  C02  SING  N  N  15  
42W  N    C15  SING  N  N  16  
42W  C12  N02  SING  N  N  17  
42W  C11  N02  SING  N  N  18  
42W  C11  O01  DOUB  N  N  19  
42W  N02  C02  SING  N  N  20  
42W  C    O    DOUB  N  N  21  
42W  C    N01  SING  N  N  22  
42W  C15  N01  SING  N  N  23  
42W  C15  S    DOUB  N  N  24  
42W  N01  C01  SING  N  N  25  
42W  C10  H1   SING  N  N  26  
42W  C01  H2   SING  N  N  27  
42W  C01  H3   SING  N  N  28  
42W  C01  H4   SING  N  N  29  
42W  C02  H5   SING  N  N  30  
42W  C02  H6   SING  N  N  31  
42W  C03  H7   SING  N  N  32  
42W  C04  H8   SING  N  N  33  
42W  C05  H9   SING  N  N  34  
42W  C06  H10  SING  N  N  35  
42W  C07  H11  SING  N  N  36  
42W  C09  H12  SING  N  N  37  
42W  C12  H13  SING  N  N  38  
42W  C14  H14  SING  N  N  39  
42W  N    H15  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
42W  SMILES            ACDLabs               12.01  "C=2C(N(Cc1ccccc1)C=C(C=2)\C=C3\NC(N(C)C3=O)=S)=O"  
42W  InChI             InChI                 1.03   "InChI=1S/C17H15N3O2S/c1-19-16(22)14(18-17(19)23)9-13-7-8-15(21)20(11-13)10-12-5-3-2-4-6-12/h2-9,11H,10H2,1H3,(H,18,23)/b14-9+"  
42W  InChIKey          InChI                 1.03   ORESZEYKAHLKRD-NTEUORMPSA-N  
42W  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=S)N/C(=C/C2=CN(Cc3ccccc3)C(=O)C=C2)C1=O"  
42W  SMILES            CACTVS                3.385  "CN1C(=S)NC(=CC2=CN(Cc3ccccc3)C(=O)C=C2)C1=O"  
42W  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CN1C(=O)C(=CC2=CN(C(=O)C=C2)Cc3ccccc3)NC1=S"  
42W  SMILES            "OpenEye OEToolkits"  2.0.4  "CN1C(=O)C(=CC2=CN(C(=O)C=C2)Cc3ccccc3)NC1=S"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
42W  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-benzyl-5-[(E)-(1-methyl-5-oxo-2-thioxoimidazolidin-4-ylidene)methyl]pyridin-2(1H)-one"  
42W  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "5-[(1-methyl-5-oxidanylidene-2-sulfanylidene-imidazolidin-4-ylidene)methyl]-1-(phenylmethyl)pyridin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
42W  "Create component"  2015-01-23  RCSB  
42W  "Modify name"       2016-01-18  RCSB  
42W  "Initial release"   2016-07-27  RCSB  
42W  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     42W
_pdbx_chem_comp_synonyms.name        "1-benzyl-5-[(E)-(1-methyl-5-oxo-2-thioxoimidazolidin-4-ylidene)methyl]pyridin-2(1H)-one"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
