data_3YW
#

_chem_comp.id                                   3YW
_chem_comp.name                                 "(2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H21 N O8"
_chem_comp.mon_nstd_parent_comp_id              NDG
_chem_comp.pdbx_synonyms                        
;(2S)-2,3-dihydroxypropyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside; (2S)-2,3-dihydroxypropyl
2-acetamido-2-deoxy-alpha-D-glucoside; (2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-D-glucoside;
(2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-12-10
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       295.286
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3YW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4X7R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  3YW  "(2S)-2,3-dihydroxypropyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside"  PDB  ?  
2  3YW  "(2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-alpha-D-glucoside"            PDB  ?  
3  3YW  "(2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-D-glucoside"                  PDB  ?  
4  3YW  "(2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-glucoside"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3YW  O3A  O3   O  0  1  N  N  N  11.948  -1.679   -95.145  -5.265   1.740  -0.702  O3A  3YW   1  
3YW  C4A  C4   C  0  1  N  N  N   8.425  -0.736   -96.006  -1.909   0.694   0.618  C4A  3YW   2  
3YW  C5A  C5   C  0  1  N  N  S   9.899  -0.570   -95.729  -2.966   1.047  -0.431  C5A  3YW   3  
3YW  O5   O4   O  0  1  N  N  N   6.465  -0.852   -98.374   0.273  -1.102   1.334  O5   3YW   4  
3YW  C6A  C6   C  0  1  N  N  N  10.586  -1.891   -95.484  -4.307   1.297   0.262  C6A  3YW   5  
3YW  C5   C7   C  0  1  N  N  R   5.357  -0.060   -98.822   0.264  -2.071   0.284  C5   3YW   6  
3YW  C6   C8   C  0  1  N  N  N   4.154  -0.973   -98.833   0.062  -3.466   0.879  C6   3YW   7  
3YW  C4   C9   C  0  1  N  N  S   5.710   0.547  -100.178   1.598  -2.024  -0.465  C4   3YW   8  
3YW  O6   O5   O  0  1  N  N  N   4.344  -2.093   -99.685  -1.233  -3.546   1.479  O6   3YW   9  
3YW  C3   C10  C  0  1  N  N  R   6.856   1.533   -99.976   1.820  -0.608  -1.007  C3   3YW  10  
3YW  O4   O6   O  0  1  N  N  N   4.589   1.245  -100.710   1.569  -2.952  -1.552  O4   3YW  11  
3YW  O3   O7   O  0  1  N  N  N   7.264   2.126  -101.209   3.097  -0.535  -1.645  O3   3YW  12  
3YW  O7   O    O  0  1  N  N  N  10.608   1.470  -100.183   2.711   2.473   1.580  O7   3YW  13  
3YW  C7   C    C  0  1  N  N  N  10.135   2.158   -99.284   2.391   2.725   0.438  C7   3YW  14  
3YW  C8   C1   C  0  1  N  N  N  10.861   3.345   -98.726   2.532   4.129  -0.091  C8   3YW  15  
3YW  N2   N    N  0  1  N  N  N   8.940   1.901   -98.750   1.909   1.750  -0.357  N2   3YW  16  
3YW  C2   C2   C  0  1  N  N  R   8.041   0.880   -99.264   1.771   0.386   0.157  C2   3YW  17  
3YW  C1   C3   C  0  1  N  N  S   7.680  -0.138   -98.167   0.430   0.245   0.883  C1   3YW  18  
3YW  O1   O1   O  0  1  N  N  N   7.878   0.282   -96.847  -0.633   0.575  -0.013  O1   3YW  19  
3YW  O2   O2   O  0  1  N  N  N  10.062   0.278   -94.592  -3.101  -0.035  -1.354  O2   3YW  20  
3YW  H1A  H1   H  0  1  N  N  N  12.371  -2.516   -94.993  -6.141   1.918  -0.333  H1A  3YW  21  
3YW  H2A  H2   H  0  1  N  N  N   7.888  -0.719   -95.046  -1.869   1.480   1.373  H2A  3YW  22  
3YW  H3A  H3   H  0  1  N  N  N   8.271  -1.709   -96.495  -2.170  -0.252   1.092  H3A  3YW  23  
3YW  H4A  H4   H  0  1  N  N  N  10.364  -0.097   -96.606  -2.660   1.946  -0.966  H4A  3YW  24  
3YW  H5A  H5   H  0  1  N  N  N  10.083  -2.415   -94.658  -4.184   2.062   1.028  H5A  3YW  25  
3YW  H6   H6   H  0  1  N  N  N  10.529  -2.505   -96.395  -4.656   0.373   0.723  H6   3YW  26  
3YW  H5   H7   H  0  1  N  N  N   5.173   0.758   -98.110  -0.550  -1.850  -0.408  H5   3YW  27  
3YW  H61  H8   H  0  1  N  N  N   3.280  -0.404   -99.183   0.143  -4.214   0.090  H61  3YW  28  
3YW  H62  H9   H  0  1  N  N  N   3.971  -1.332   -97.809   0.825  -3.652   1.635  H62  3YW  29  
3YW  H4   H10  H  0  1  N  N  N   6.033  -0.252  -100.862   2.408  -2.284   0.216  H4   3YW  30  
3YW  HO6  H11  H  0  1  N  Y  N   3.569  -2.642   -99.665  -1.429  -4.405   1.878  HO6  3YW  31  
3YW  H3   H12  H  0  1  N  N  N   6.483   2.330   -99.316   1.038  -0.366  -1.726  H3   3YW  32  
3YW  HO4  H13  H  0  1  N  Y  N   3.870   0.638  -100.839   1.431  -3.870  -1.281  HO4  3YW  33  
3YW  HO3  H14  H  0  1  N  Y  N   7.977   2.733  -101.048   3.200  -1.144  -2.389  HO3  3YW  34  
3YW  H81  H15  H  0  1  N  N  N  11.824   3.463   -99.244   3.520   4.253  -0.534  H81  3YW  35  
3YW  H82  H16  H  0  1  N  N  N  10.252   4.249   -98.873   1.769   4.310  -0.849  H82  3YW  36  
3YW  H83  H17  H  0  1  N  N  N  11.039   3.194   -97.651   2.409   4.840   0.726  H83  3YW  37  
3YW  HN2  H18  H  0  1  N  N  N   8.648   2.437   -97.958   1.652   1.952  -1.271  HN2  3YW  38  
3YW  H2   H19  H  0  1  N  N  N   8.592   0.319  -100.033   2.585   0.174   0.851  H2   3YW  39  
3YW  H1   H20  H  0  1  N  N  N   8.450  -0.911   -98.306   0.407   0.920   1.738  H1   3YW  40  
3YW  H21  H21  H  0  1  N  N  N  10.988   0.389   -94.409  -3.371  -0.869  -0.946  H21  3YW  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3YW  O3   C3   SING  N  N   1  
3YW  O4   C4   SING  N  N   2  
3YW  O7   C7   DOUB  N  N   3  
3YW  C4   C3   SING  N  N   4  
3YW  C4   C5   SING  N  N   5  
3YW  C3   C2   SING  N  N   6  
3YW  O6   C6   SING  N  N   7  
3YW  C7   N2   SING  N  N   8  
3YW  C7   C8   SING  N  N   9  
3YW  C2   N2   SING  N  N  10  
3YW  C2   C1   SING  N  N  11  
3YW  C6   C5   SING  N  N  12  
3YW  C5   O5   SING  N  N  13  
3YW  O5   C1   SING  N  N  14  
3YW  C1   O1   SING  N  N  15  
3YW  O1   C4A  SING  N  N  16  
3YW  C4A  C5A  SING  N  N  17  
3YW  C5A  C6A  SING  N  N  18  
3YW  C5A  O2   SING  N  N  19  
3YW  C6A  O3A  SING  N  N  20  
3YW  O3A  H1A  SING  N  N  21  
3YW  C4A  H2A  SING  N  N  22  
3YW  C4A  H3A  SING  N  N  23  
3YW  C5A  H4A  SING  N  N  24  
3YW  C6A  H5A  SING  N  N  25  
3YW  C6A  H6   SING  N  N  26  
3YW  C5   H5   SING  N  N  27  
3YW  C6   H61  SING  N  N  28  
3YW  C6   H62  SING  N  N  29  
3YW  C4   H4   SING  N  N  30  
3YW  O6   HO6  SING  N  N  31  
3YW  C3   H3   SING  N  N  32  
3YW  O4   HO4  SING  N  N  33  
3YW  O3   HO3  SING  N  N  34  
3YW  C8   H81  SING  N  N  35  
3YW  C8   H82  SING  N  N  36  
3YW  C8   H83  SING  N  N  37  
3YW  N2   HN2  SING  N  N  38  
3YW  C2   H2   SING  N  N  39  
3YW  C1   H1   SING  N  N  40  
3YW  O2   H21  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3YW  SMILES            ACDLabs               12.01  "O=C(NC1C(O)C(O)C(OC1OCC(O)CO)CO)C"  
3YW  InChI             InChI                 1.03   "InChI=1S/C11H21NO8/c1-5(15)12-8-10(18)9(17)7(3-14)20-11(8)19-4-6(16)2-13/h6-11,13-14,16-18H,2-4H2,1H3,(H,12,15)/t6-,7+,8+,9+,10+,11-/m0/s1"  
3YW  InChIKey          InChI                 1.03   BURZSZGRQNCGQJ-KEWAQLPFSA-N  
3YW  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1OC[C@@H](O)CO"  
3YW  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OC[CH](O)CO"  
3YW  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC[C@H](CO)O)CO)O)O"  
3YW  SMILES            "OpenEye OEToolkits"  1.9.2  "CC(=O)NC1C(C(C(OC1OCC(CO)O)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3YW  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2,3-dihydroxypropyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside"  
3YW  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "N-[(2S,3R,4R,5S,6R)-2-[(2S)-2,3-bis(oxidanyl)propoxy]-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide"  
#
_pdbx_chem_comp_related.comp_id            3YW
_pdbx_chem_comp_related.related_comp_id    NDG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  3YW  C7   NDG  C7   "Carbohydrate core"  
 2  3YW  C8   NDG  C8   "Carbohydrate core"  
 3  3YW  C3   NDG  C3   "Carbohydrate core"  
 4  3YW  C2   NDG  C2   "Carbohydrate core"  
 5  3YW  C1   NDG  C1   "Carbohydrate core"  
 6  3YW  C5   NDG  C5   "Carbohydrate core"  
 7  3YW  C6   NDG  C6   "Carbohydrate core"  
 8  3YW  C4   NDG  C4   "Carbohydrate core"  
 9  3YW  N2   NDG  N2   "Carbohydrate core"  
10  3YW  O7   NDG  O7   "Carbohydrate core"  
11  3YW  O1   NDG  O1   "Carbohydrate core"  
12  3YW  O5   NDG  O5   "Carbohydrate core"  
13  3YW  O6   NDG  O6   "Carbohydrate core"  
14  3YW  O4   NDG  O4   "Carbohydrate core"  
15  3YW  O3   NDG  O3   "Carbohydrate core"  
16  3YW  H4   NDG  H4   "Carbohydrate core"  
17  3YW  HO6  NDG  HO6  "Carbohydrate core"  
18  3YW  H3   NDG  H3   "Carbohydrate core"  
19  3YW  HO4  NDG  HO4  "Carbohydrate core"  
20  3YW  HO3  NDG  HO3  "Carbohydrate core"  
21  3YW  H81  NDG  H81  "Carbohydrate core"  
22  3YW  H82  NDG  H82  "Carbohydrate core"  
23  3YW  H83  NDG  H83  "Carbohydrate core"  
24  3YW  HN2  NDG  HN2  "Carbohydrate core"  
25  3YW  H2   NDG  H2   "Carbohydrate core"  
26  3YW  H1   NDG  H1   "Carbohydrate core"  
27  3YW  H5   NDG  H5   "Carbohydrate core"  
28  3YW  H61  NDG  H61  "Carbohydrate core"  
29  3YW  H62  NDG  H62  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
3YW  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
3YW  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
3YW  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
3YW  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3YW  "Create component"          2014-12-10  RCSB  
3YW  "Initial release"           2015-02-25  RCSB  
3YW  "Other modification"        2020-07-03  RCSB  
3YW  "Modify parent residue"     2020-07-17  RCSB  
3YW  "Modify name"               2020-07-17  RCSB  
3YW  "Modify synonyms"           2020-07-17  RCSB  
3YW  "Modify internal type"      2020-07-17  RCSB  
3YW  "Modify linking type"       2020-07-17  RCSB  
3YW  "Modify atom id"            2020-07-17  RCSB  
3YW  "Modify component atom id"  2020-07-17  RCSB  
3YW  "Modify leaving atom flag"  2020-07-17  RCSB  
##
