data_13W
# 
_chem_comp.id                                    13W 
_chem_comp.name                                  "3-{5-[(2E,4S)-2-imino-1,4-dimethyl-6-oxohexahydropyrimidin-4-yl]thiophen-3-yl}benzonitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H16 N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-04 
_chem_comp.pdbx_modified_date                    2012-10-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.400 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     13W 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HA5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
13W C1  C1  C 0 1 Y N N 28.276 11.245 18.721 3.773  -2.001 -0.958 C1  13W 1  
13W C2  C2  C 0 1 Y N N 28.976 10.834 19.880 4.878  -1.422 -0.367 C2  13W 2  
13W C3  C3  C 0 1 Y N N 28.245 10.482 21.038 4.765  -0.181 0.265  C3  13W 3  
13W C4  C4  C 0 1 Y N N 26.836 10.537 21.044 3.532  0.471  0.296  C4  13W 4  
13W C5  C5  C 0 1 Y N N 26.105 10.945 19.888 2.424  -0.120 -0.302 C5  13W 5  
13W C6  C6  C 0 1 Y N N 26.855 11.303 18.723 2.551  -1.359 -0.929 C6  13W 6  
13W C7  C7  C 0 1 Y N N 24.627 11.002 19.916 1.110  0.567  -0.272 C7  13W 7  
13W C8  C8  C 0 1 Y N N 23.851 10.490 20.984 -0.037 0.028  -0.853 C8  13W 8  
13W C9  C9  C 0 1 Y N N 22.481 10.670 20.776 -1.130 0.776  -0.734 C9  13W 9  
13W S1  S1  S 0 1 Y N N 22.193 11.457 19.299 -0.755 2.250  0.148  S1  13W 10 
13W C10 C10 C 0 1 Y N N 23.829 11.568 18.910 0.924  1.760  0.323  C10 13W 11 
13W C11 C11 C 0 1 N N S 21.336 10.250 21.705 -2.490 0.414  -1.276 C11 13W 12 
13W C12 C12 C 0 1 N N N 20.647 11.519 22.264 -3.579 1.026  -0.391 C12 13W 13 
13W C13 C13 C 0 1 N N N 21.457 12.188 23.405 -3.690 0.263  0.899  C13 13W 14 
13W N1  N1  N 0 1 N N N 22.271 11.345 24.174 -3.269 -1.003 1.029  N1  13W 15 
13W C14 C14 C 0 1 N N N 22.327 9.968  23.995 -2.645 -1.661 -0.018 C14 13W 16 
13W N2  N2  N 0 1 N N N 21.861 9.425  22.821 -2.657 -1.050 -1.260 N2  13W 17 
13W N3  N3  N 0 1 N N N 22.824 9.163  24.939 -2.066 -2.813 0.161  N3  13W 18 
13W C15 C15 C 0 1 N N N 20.333 9.385  20.916 -2.632 0.937  -2.707 C15 13W 19 
13W C16 C16 C 0 1 N N N 23.096 12.025 25.220 -3.473 -1.704 2.299  C16 13W 20 
13W O1  O1  O 0 1 N N N 21.372 13.400 23.590 -4.179 0.815  1.862  O1  13W 21 
13W C17 C17 C 0 1 N N N 28.927 10.060 22.234 5.911  0.419  0.879  C17 13W 22 
13W N4  N4  N 0 1 N N N 29.447 9.716  23.211 6.820  0.896  1.366  N4  13W 23 
13W H1  H1  H 0 1 N N N 28.824 11.516 17.830 3.866  -2.958 -1.449 H1  13W 24 
13W H2  H2  H 0 1 N N N 30.055 10.790 19.880 5.832  -1.928 -0.393 H2  13W 25 
13W H3  H3  H 0 1 N N N 26.299 10.265 21.941 3.439  1.430  0.784  H3  13W 26 
13W H4  H4  H 0 1 N N N 26.334 11.622 17.832 1.691  -1.817 -1.394 H4  13W 27 
13W H5  H5  H 0 1 N N N 24.270 10.015 21.859 -0.037 -0.925 -1.362 H5  13W 28 
13W H6  H6  H 0 1 N N N 24.213 12.016 18.005 1.691  2.331  0.826  H6  13W 29 
13W H7  H7  H 0 1 N N N 20.528 12.244 21.445 -3.328 2.065  -0.175 H7  13W 30 
13W H8  H8  H 0 1 N N N 19.657 11.239 22.653 -4.534 0.989  -0.915 H8  13W 31 
13W H9  H9  H 0 1 N N N 23.130 9.673  25.743 -2.068 -3.226 1.039  H9  13W 32 
13W H11 H11 H 0 1 N N N 19.509 9.081  21.579 -1.862 0.489  -3.335 H11 13W 33 
13W H12 H12 H 0 1 N N N 19.930 9.967  20.074 -3.616 0.672  -3.094 H12 13W 34 
13W H13 H13 H 0 1 N N N 20.844 8.490  20.532 -2.519 2.021  -2.710 H13 13W 35 
13W H14 H14 H 0 1 N N N 23.693 11.276 25.761 -4.436 -2.214 2.282  H14 13W 36 
13W H15 H15 H 0 1 N N N 23.768 12.753 24.741 -2.677 -2.434 2.443  H15 13W 37 
13W H16 H16 H 0 1 N N N 22.434 12.547 25.927 -3.458 -0.984 3.117  H16 13W 38 
13W H17 H17 H 0 1 N N N 21.877 8.431  22.715 -2.771 -1.560 -2.078 H17 13W 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
13W C1  C6  DOUB Y N 1  
13W C1  C2  SING Y N 2  
13W C6  C5  SING Y N 3  
13W C10 S1  SING Y N 4  
13W C10 C7  DOUB Y N 5  
13W S1  C9  SING Y N 6  
13W C2  C3  DOUB Y N 7  
13W C5  C7  SING N N 8  
13W C5  C4  DOUB Y N 9  
13W C7  C8  SING Y N 10 
13W C9  C8  DOUB Y N 11 
13W C9  C11 SING N N 12 
13W C15 C11 SING N N 13 
13W C3  C4  SING Y N 14 
13W C3  C17 SING N N 15 
13W C11 C12 SING N N 16 
13W C11 N2  SING N N 17 
13W C17 N4  TRIP N N 18 
13W C12 C13 SING N N 19 
13W N2  C14 SING N N 20 
13W C13 O1  DOUB N N 21 
13W C13 N1  SING N N 22 
13W C14 N1  SING N N 23 
13W C14 N3  DOUB N N 24 
13W N1  C16 SING N N 25 
13W C1  H1  SING N N 26 
13W C2  H2  SING N N 27 
13W C4  H3  SING N N 28 
13W C6  H4  SING N N 29 
13W C8  H5  SING N N 30 
13W C10 H6  SING N N 31 
13W C12 H7  SING N N 32 
13W C12 H8  SING N N 33 
13W N3  H9  SING N N 34 
13W C15 H11 SING N N 35 
13W C15 H12 SING N N 36 
13W C15 H13 SING N N 37 
13W C16 H14 SING N N 38 
13W C16 H15 SING N N 39 
13W C16 H16 SING N N 40 
13W N2  H17 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
13W SMILES           ACDLabs              12.01 "O=C3N(C(=[N@H])NC(c2scc(c1cc(C#N)ccc1)c2)(C)C3)C"                                                                                   
13W InChI            InChI                1.03  "InChI=1S/C17H16N4OS/c1-17(8-15(22)21(2)16(19)20-17)14-7-13(10-23-14)12-5-3-4-11(6-12)9-18/h3-7,10H,8H2,1-2H3,(H2,19,20)/t17-/m0/s1" 
13W InChIKey         InChI                1.03  MLNWGLXMDFUREO-KRWDZBQOSA-N                                                                                                          
13W SMILES_CANONICAL CACTVS               3.370 "CN1C(=N)N[C@@](C)(CC1=O)c2scc(c2)c3cccc(c3)C#N"                                                                                     
13W SMILES           CACTVS               3.370 "CN1C(=N)N[C](C)(CC1=O)c2scc(c2)c3cccc(c3)C#N"                                                                                       
13W SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C/1\N[C@](CC(=O)N1C)(C)c2cc(cs2)c3cccc(c3)C#N"                                                                                
13W SMILES           "OpenEye OEToolkits" 1.7.6 "CC1(CC(=O)N(C(=N)N1)C)c2cc(cs2)c3cccc(c3)C#N"                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
13W "SYSTEMATIC NAME" ACDLabs              12.01 "3-{5-[(2E,4S)-2-imino-1,4-dimethyl-6-oxohexahydropyrimidin-4-yl]thiophen-3-yl}benzonitrile"                
13W "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[5-[(4S)-2-azanylidene-1,4-dimethyl-6-oxidanylidene-1,3-diazinan-4-yl]thiophen-3-yl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
13W "Create component" 2012-10-04 RCSB 
13W "Initial release"  2012-10-12 RCSB 
# 
