data_Z8V
#

_chem_comp.id                                   Z8V
_chem_comp.name                                 "N-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-2,6-bis(hydroxymethyl)piperidin-3-yl]acetamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H18 N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-12
_chem_comp.pdbx_modified_date                   2021-07-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       234.250
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z8V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7MFL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z8V  CAA  C1   C  0  1  N  N  N  -12.536   9.975   -9.968   4.555   0.211  -0.506  CAA  Z8V   1  
Z8V  CAG  C2   C  0  1  N  N  N  -12.758  17.848   -8.809  -3.452  -0.578   0.368  CAG  Z8V   2  
Z8V  CAH  C3   C  0  1  N  N  N   -9.874  13.973   -9.184   0.292   2.572   0.278  CAH  Z8V   3  
Z8V  CAK  C4   C  0  1  N  N  N  -12.809  11.320   -9.301   3.207  -0.084   0.100  CAK  Z8V   4  
Z8V  CAL  C5   C  0  1  N  N  R  -12.555  16.515   -9.520  -2.061  -0.328  -0.220  CAL  Z8V   5  
Z8V  CAM  C6   C  0  1  N  N  R  -11.173  14.592   -9.674  -0.207   1.232  -0.264  CAM  Z8V   6  
Z8V  CAN  C7   C  0  1  N  N  R  -13.747  15.685   -9.184  -1.130  -1.480   0.167  CAN  Z8V   7  
Z8V  CAO  C8   C  0  1  N  N  R  -13.594  14.314   -9.799   0.265  -1.216  -0.406  CAO  Z8V   8  
Z8V  CAP  C9   C  0  1  N  N  S  -12.301  13.693   -9.219   0.779   0.127   0.122  CAP  Z8V   9  
Z8V  NAI  N1   N  0  1  N  N  N  -12.112  12.360   -9.791   2.090   0.414  -0.467  NAI  Z8V  10  
Z8V  NAJ  N2   N  0  1  N  N  N  -11.311  15.915   -9.046  -1.526   0.933   0.308  NAJ  Z8V  11  
Z8V  OAB  O1   O  0  1  N  N  N  -13.513  11.385   -8.291   3.127  -0.771   1.096  OAB  Z8V  12  
Z8V  OAC  O2   O  0  1  N  N  N  -12.857  17.608   -7.396  -4.350   0.435  -0.089  OAC  Z8V  13  
Z8V  OAD  O3   O  0  1  N  N  N   -8.770  14.785   -9.593  -0.565   3.620  -0.179  OAD  Z8V  14  
Z8V  OAE  O4   O  0  1  N  N  N  -14.890  16.323   -9.763  -1.640  -2.705  -0.363  OAE  Z8V  15  
Z8V  OAF  O5   O  0  1  N  N  N  -14.766  13.513   -9.577   1.153  -2.260  -0.000  OAF  Z8V  16  
Z8V  H1   H1   H  0  1  N  N  N  -13.048   9.178   -9.410   5.332  -0.273   0.085  H1   Z8V  17  
Z8V  H2   H2   H  0  1  N  N  N  -12.910   9.996  -11.002   4.585  -0.169  -1.527  H2   Z8V  18  
Z8V  H3   H3   H  0  1  N  N  N  -11.453   9.782   -9.973   4.721   1.288  -0.513  H3   Z8V  19  
Z8V  H4   H4   H  0  1  N  N  N  -11.903  18.510   -9.013  -3.812  -1.555   0.046  H4   Z8V  20  
Z8V  H5   H5   H  0  1  N  N  N  -13.683  18.322   -9.169  -3.397  -0.552   1.456  H5   Z8V  21  
Z8V  H6   H6   H  0  1  N  N  N   -9.892  13.906   -8.086   0.287   2.548   1.368  H6   Z8V  22  
Z8V  H7   H7   H  0  1  N  N  N   -9.765  12.965   -9.611   1.307   2.753  -0.076  H7   Z8V  23  
Z8V  H8   H8   H  0  1  N  N  N  -12.509  16.682  -10.606  -2.131  -0.267  -1.306  H8   Z8V  24  
Z8V  H9   H9   H  0  1  N  N  N  -11.167  14.675  -10.771  -0.286   1.286  -1.349  H9   Z8V  25  
Z8V  H10  H10  H  0  1  N  N  N  -13.853  15.597   -8.093  -1.070  -1.551   1.253  H10  Z8V  26  
Z8V  H11  H11  H  0  1  N  N  N  -13.446  14.440  -10.882   0.213  -1.185  -1.494  H11  Z8V  27  
Z8V  H12  H12  H  0  1  N  N  N  -12.354  13.658   -8.121   0.869   0.081   1.207  H12  Z8V  28  
Z8V  H13  H13  H  0  1  N  N  N  -11.467  12.223  -10.543   2.154   0.963  -1.264  H13  Z8V  29  
Z8V  H14  H14  H  0  1  N  N  N  -11.340  15.817   -8.051  -1.488   0.916   1.316  H14  Z8V  30  
Z8V  H16  H16  H  0  1  N  N  N  -12.984  18.433   -6.942  -5.253   0.340   0.245  H16  Z8V  31  
Z8V  H17  H17  H  0  1  N  N  N   -7.959  14.396   -9.286  -0.308   4.501   0.127  H17  Z8V  32  
Z8V  H18  H18  H  0  1  N  N  N  -14.997  17.187   -9.384  -1.099  -3.479  -0.157  H18  Z8V  33  
Z8V  H19  H19  H  0  1  N  N  N  -14.522  12.712   -9.129   0.888  -3.140  -0.300  H19  Z8V  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z8V  CAA  CAK  SING  N  N   1  
Z8V  CAO  OAF  SING  N  N   2  
Z8V  CAO  CAP  SING  N  N   3  
Z8V  CAO  CAN  SING  N  N   4  
Z8V  NAI  CAK  SING  N  N   5  
Z8V  NAI  CAP  SING  N  N   6  
Z8V  OAE  CAN  SING  N  N   7  
Z8V  CAM  CAP  SING  N  N   8  
Z8V  CAM  CAH  SING  N  N   9  
Z8V  CAM  NAJ  SING  N  N  10  
Z8V  OAD  CAH  SING  N  N  11  
Z8V  CAL  CAN  SING  N  N  12  
Z8V  CAL  NAJ  SING  N  N  13  
Z8V  CAL  CAG  SING  N  N  14  
Z8V  CAK  OAB  DOUB  N  N  15  
Z8V  CAG  OAC  SING  N  N  16  
Z8V  CAA  H1   SING  N  N  17  
Z8V  CAA  H2   SING  N  N  18  
Z8V  CAA  H3   SING  N  N  19  
Z8V  CAG  H4   SING  N  N  20  
Z8V  CAG  H5   SING  N  N  21  
Z8V  CAH  H6   SING  N  N  22  
Z8V  CAH  H7   SING  N  N  23  
Z8V  CAL  H8   SING  N  N  24  
Z8V  CAM  H9   SING  N  N  25  
Z8V  CAN  H10  SING  N  N  26  
Z8V  CAO  H11  SING  N  N  27  
Z8V  CAP  H12  SING  N  N  28  
Z8V  NAI  H13  SING  N  N  29  
Z8V  NAJ  H14  SING  N  N  30  
Z8V  OAC  H16  SING  N  N  31  
Z8V  OAD  H17  SING  N  N  32  
Z8V  OAE  H18  SING  N  N  33  
Z8V  OAF  H19  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z8V  SMILES            ACDLabs               12.01  "OC1C(O)C(NC(C)=O)C(CO)NC1CO"  
Z8V  InChI             InChI                 1.03   "InChI=1S/C9H18N2O5/c1-4(14)10-7-5(2-12)11-6(3-13)8(15)9(7)16/h5-9,11-13,15-16H,2-3H2,1H3,(H,10,14)/t5-,6+,7-,8+,9+/m0/s1"  
Z8V  InChIKey          InChI                 1.03   GYKHMAHAJKZLAT-KVEIKIFDSA-N  
Z8V  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)N[C@H]1CO"  
Z8V  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)N[CH]1CO"  
Z8V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=O)N[C@H]1[C@@H](N[C@@H]([C@H]([C@@H]1O)O)CO)CO"  
Z8V  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=O)NC1C(NC(C(C1O)O)CO)CO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z8V  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-2,6-bis(hydroxymethyl)piperidin-3-yl]acetamide"  
Z8V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2,6-bis(hydroxymethyl)-4,5-bis(oxidanyl)piperidin-3-yl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z8V  "Create component"  2021-04-12  RCSB  
Z8V  "Initial release"   2021-07-28  RCSB  
##
