data_Z4V
#

_chem_comp.id                                   Z4V
_chem_comp.name                                 4-thio-beta-L-ribopyranose
_chem_comp.type                                 "L-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       166.195
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z4V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1XNK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z4V  C1   C1   C  0  1  N  N  S  2.675  -0.305  -3.603   1.607   0.529   0.294  C1   Z4V   1  
Z4V  C2   C2   C  0  1  N  N  S  3.430   0.750  -4.428   1.155  -0.653  -0.568  C2   Z4V   2  
Z4V  C3   C3   C  0  1  N  N  R  3.804   0.190  -5.809  -0.320  -0.951  -0.279  C3   Z4V   3  
Z4V  C4   C4   C  0  1  N  N  S  2.540  -0.356  -6.485  -1.145   0.312  -0.544  C4   Z4V   4  
Z4V  C5   C5   C  0  1  N  N  N  1.853  -1.374  -5.576  -0.604   1.456   0.317  C5   Z4V   5  
Z4V  O1   O1   O  0  1  N  Y  N  2.241   0.271  -2.288   2.966   0.848  -0.010  O1   Z4V   6  
Z4V  O2   O2   O  0  1  N  N  N  4.625   1.166  -3.776   1.944  -1.802  -0.255  O2   Z4V   7  
Z4V  O3   O3   O  0  1  N  N  N  4.764  -0.854  -5.623  -0.470  -1.342   1.087  O3   Z4V   8  
Z4V  S4   S4   S  0  1  N  N  N  2.905  -1.104  -8.106  -2.881   0.001  -0.119  S4   Z4V   9  
Z4V  O5   O5   O  0  1  N  N  N  1.527  -0.770  -4.321   0.779   1.660   0.021  O5   Z4V  10  
Z4V  H1   H1   H  0  1  N  N  N  3.358  -1.146  -3.412   1.523   0.263   1.348  H1   Z4V  11  
Z4V  HO1  HO1  H  0  1  N  N  N  1.776  -0.391  -1.790   3.320   1.589   0.501  HO1  Z4V  12  
Z4V  H2   H2   H  0  1  N  N  N  2.765   1.614  -4.574   1.277  -0.403  -1.622  H2   Z4V  13  
Z4V  HO2  HO2  H  0  1  N  Y  N  5.067   1.816  -4.309   2.891  -1.683  -0.409  HO2  Z4V  14  
Z4V  H3   H3   H  0  1  N  N  N  4.224   0.999  -6.425  -0.663  -1.756  -0.929  H3   Z4V  15  
Z4V  HO3  HO3  H  0  1  N  Y  N  5.009  -1.214  -6.467  -1.381  -1.546   1.339  HO3  Z4V  16  
Z4V  H4   H4   H  0  1  N  N  N  1.849   0.476  -6.684  -1.070   0.582  -1.598  H4   Z4V  17  
Z4V  HS4  HS4  H  0  1  N  Y  N  1.727  -1.493  -8.496  -3.476   1.175  -0.398  HS4  Z4V  18  
Z4V  H51  H51  H  0  1  N  N  N  2.529  -2.225  -5.406  -0.717   1.202   1.371  H51  Z4V  19  
Z4V  H52  H52  H  0  1  N  N  N  0.931  -1.730  -6.059  -1.161   2.368   0.101  H52  Z4V  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z4V  C1  H1   SING  N  N   1  
Z4V  C1  O1   SING  N  N   2  
Z4V  O1  HO1  SING  N  N   3  
Z4V  C1  O5   SING  N  N   4  
Z4V  C1  C2   SING  N  N   5  
Z4V  C2  H2   SING  N  N   6  
Z4V  C2  O2   SING  N  N   7  
Z4V  O2  HO2  SING  N  N   8  
Z4V  C2  C3   SING  N  N   9  
Z4V  C3  H3   SING  N  N  10  
Z4V  C3  O3   SING  N  N  11  
Z4V  O3  HO3  SING  N  N  12  
Z4V  C3  C4   SING  N  N  13  
Z4V  C4  H4   SING  N  N  14  
Z4V  C4  S4   SING  N  N  15  
Z4V  S4  HS4  SING  N  N  16  
Z4V  C4  C5   SING  N  N  17  
Z4V  C5  O5   SING  N  N  18  
Z4V  C5  H51  SING  N  N  19  
Z4V  C5  H52  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z4V  SMILES            ACDLabs               12.01  "OC1C(S)COC(O)C1O"  
Z4V  InChI             InChI                 1.03   "InChI=1S/C5H10O4S/c6-3-2(10)1-9-5(8)4(3)7/h2-8,10H,1H2/t2-,3-,4-,5-/m0/s1"  
Z4V  InChIKey          InChI                 1.03   MFDZOCXKSSGEBR-FCAWWPLPSA-N  
Z4V  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1OC[C@H](S)[C@H](O)[C@@H]1O"  
Z4V  SMILES            CACTVS                3.370  "O[CH]1OC[CH](S)[CH](O)[CH]1O"  
Z4V  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@@H]([C@@H]([C@@H]([C@H](O1)O)O)O)S"  
Z4V  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(C(O1)O)O)O)S"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z4V  "SYSTEMATIC NAME"  ACDLabs               12.01  4-thio-beta-L-ribopyranose  
Z4V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S,3S,4R,5S)-5-sulfanyloxane-2,3,4-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z4V  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
Z4V  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z4V  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
Z4V  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z4V  "Create component"          2012-12-18  RCSB  
Z4V  "Other modification"        2013-01-09  RCSB  
Z4V  "Modify atom id"            2013-01-11  RCSB  
Z4V  "Modify atom id"            2020-05-09  RCSB  
Z4V  "Modify component atom id"  2020-07-17  RCSB  
Z4V  "Initial release"           2020-07-29  RCSB  
##
