data_Y5V
#

_chem_comp.id                                   Y5V
_chem_comp.name                                 "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H21 N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-05
_chem_comp.pdbx_modified_date                   2022-02-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       395.409
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y5V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LM4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y5V  C21  C1   C  0  1  Y  N  N  -11.703  -35.834  -14.249   6.220   2.822   0.296  C21  Y5V   1  
Y5V  C20  C2   C  0  1  Y  N  N  -12.293  -36.859  -14.971   5.726   1.534   0.284  C20  Y5V   2  
Y5V  C19  C3   C  0  1  Y  N  N  -13.668  -37.020  -14.942   4.365   1.314   0.067  C19  Y5V   3  
Y5V  C17  C4   C  0  1  N  N  N  -14.330  -38.145  -15.733   3.828  -0.062   0.053  C17  Y5V   4  
Y5V  C14  C5   C  0  1  N  N  N  -15.566  -38.927  -17.813   4.233  -2.378   0.133  C14  Y5V   5  
Y5V  C12  C6   C  0  1  N  N  N  -15.615  -40.310  -17.258   2.783  -2.580   0.036  C12  Y5V   6  
Y5V  C22  C7   C  0  1  Y  N  N  -12.489  -34.971  -13.499   5.370   3.895   0.093  C22  Y5V   7  
Y5V  C23  C8   C  0  1  Y  N  N  -13.864  -35.134  -13.470   4.020   3.684  -0.128  C23  Y5V   8  
Y5V  C11  C9   C  0  1  N  N  N  -15.006  -40.588  -15.927   1.975  -1.456  -0.051  C11  Y5V   9  
Y5V  C01  C10  C  0  1  N  N  N   -9.774  -41.037  -11.737  -6.086   0.481   2.918  C01  Y5V  10  
Y5V  C03  C11  C  0  1  Y  N  N  -12.084  -40.756  -11.401  -6.018   0.413   0.542  C03  Y5V  11  
Y5V  C04  C12  C  0  1  Y  N  N  -12.502  -41.886  -12.088  -4.642   0.549   0.633  C04  Y5V  12  
Y5V  C05  C13  C  0  1  Y  N  N  -13.713  -42.482  -11.769  -3.873   0.586  -0.515  C05  Y5V  13  
Y5V  C06  C14  C  0  1  N  N  N  -14.177  -43.732  -12.519  -2.377   0.734  -0.414  C06  Y5V  14  
Y5V  C07  C15  C  0  1  N  N  N  -15.416  -43.487  -13.375  -1.732  -0.651  -0.332  C07  Y5V  15  
Y5V  C09  C16  C  0  1  N  N  N  -15.044  -41.988  -15.335   0.504  -1.601  -0.150  C09  Y5V  16  
Y5V  C24  C17  C  0  1  Y  N  N  -14.453  -36.158  -14.192   3.512   2.401  -0.137  C24  Y5V  17  
Y5V  C25  C18  C  0  1  N  N  N  -15.968  -36.341  -14.164   2.041   2.174  -0.373  C25  Y5V  18  
Y5V  C26  C19  C  0  1  Y  N  N  -14.508  -41.946  -10.768  -4.474   0.486  -1.756  C26  Y5V  19  
Y5V  C27  C20  C  0  1  Y  N  N  -14.092  -40.814  -10.085  -5.846   0.350  -1.854  C27  Y5V  20  
Y5V  C28  C21  C  0  1  Y  N  N  -12.881  -40.219  -10.401  -6.623   0.313  -0.707  C28  Y5V  21  
Y5V  N08  N1   N  0  1  N  N  N  -15.381  -42.155  -13.938  -0.277  -0.507  -0.234  N08  Y5V  22  
Y5V  N16  N2   N  0  1  N  N  N  -14.933  -37.861  -17.060   4.699  -1.109   0.137  N16  Y5V  23  
Y5V  N18  N3   N  0  1  N  N  N  -14.376  -39.519  -15.175   2.532  -0.235  -0.034  N18  Y5V  24  
Y5V  O02  O1   O  0  1  N  N  N  -10.861  -40.153  -11.723  -6.775   0.372   1.671  O02  Y5V  25  
Y5V  O10  O2   O  0  1  N  N  N  -14.797  -42.932  -16.005   0.003  -2.708  -0.156  O10  Y5V  26  
Y5V  O13  O3   O  0  1  N  N  N  -16.226  -41.342  -17.985   2.250  -3.827   0.025  O13  Y5V  27  
Y5V  O15  O4   O  0  1  N  N  N  -16.042  -38.692  -18.868   4.995  -3.326   0.211  O15  Y5V  28  
Y5V  O29  O5   O  0  1  N  N  N  -12.462  -39.077   -9.710  -7.973   0.179  -0.802  O29  Y5V  29  
Y5V  H1   H1   H  0  1  N  N  N  -10.631  -35.707  -14.270   7.272   2.994   0.469  H1   Y5V  30  
Y5V  H2   H2   H  0  1  N  N  N  -11.682  -37.531  -15.555   6.391   0.698   0.443  H2   Y5V  31  
Y5V  H3   H3   H  0  1  N  N  N  -12.028  -34.172  -12.938   5.761   4.901   0.108  H3   Y5V  32  
Y5V  H4   H4   H  0  1  N  N  N  -14.476  -34.463  -12.885   3.362   4.525  -0.285  H4   Y5V  33  
Y5V  H5   H5   H  0  1  N  N  N   -8.857  -40.488  -11.997  -5.375  -0.340   3.013  H5   Y5V  34  
Y5V  H6   H6   H  0  1  N  N  N   -9.659  -41.492  -10.742  -5.553   1.431   2.958  H6   Y5V  35  
Y5V  H7   H7   H  0  1  N  N  N   -9.953  -41.826  -12.483  -6.806   0.433   3.736  H7   Y5V  36  
Y5V  H8   H8   H  0  1  N  N  N  -11.885  -42.302  -12.871  -4.170   0.627   1.602  H8   Y5V  37  
Y5V  H9   H9   H  0  1  N  N  N  -14.408  -44.517  -11.784  -2.003   1.258  -1.294  H9   Y5V  38  
Y5V  H10  H10  H  0  1  N  N  N  -13.360  -44.072  -13.173  -2.128   1.304   0.481  H10  Y5V  39  
Y5V  H11  H11  H  0  1  N  N  N  -16.315  -43.594  -12.751  -2.105  -1.174   0.548  H11  Y5V  40  
Y5V  H12  H12  H  0  1  N  N  N  -15.446  -44.225  -14.190  -1.981  -1.221  -1.227  H12  Y5V  41  
Y5V  H13  H13  H  0  1  N  N  N  -16.241  -37.015  -13.338   1.535   2.048   0.584  H13  Y5V  42  
Y5V  H14  H14  H  0  1  N  N  N  -16.452  -35.365  -14.016   1.620   3.032  -0.897  H14  Y5V  43  
Y5V  H15  H15  H  0  1  N  N  N  -16.302  -36.775  -15.118   1.905   1.276  -0.977  H15  Y5V  44  
Y5V  H16  H16  H  0  1  N  N  N  -15.451  -42.410  -10.520  -3.870   0.515  -2.651  H16  Y5V  45  
Y5V  H17  H17  H  0  1  N  N  N  -14.712  -40.395   -9.306  -6.313   0.272  -2.825  H17  Y5V  46  
Y5V  H18  H18  H  0  1  N  N  N  -15.587  -41.359  -13.369   0.123   0.377  -0.229  H18  Y5V  47  
Y5V  H19  H19  H  0  1  N  N  N  -14.903  -36.934  -17.435   5.653  -0.943   0.200  H19  Y5V  48  
Y5V  H20  H20  H  0  1  N  N  N  -16.558  -40.998  -18.806   2.905  -4.536   0.086  H20  Y5V  49  
Y5V  H21  H21  H  0  1  N  N  N  -13.116  -38.840   -9.063  -8.448   1.020  -0.859  H21  Y5V  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y5V  O15  C14  DOUB  N  N   1  
Y5V  O13  C12  SING  N  N   2  
Y5V  C14  C12  SING  N  N   3  
Y5V  C14  N16  SING  N  N   4  
Y5V  C12  C11  DOUB  N  N   5  
Y5V  N16  C17  SING  N  N   6  
Y5V  O10  C09  DOUB  N  N   7  
Y5V  C11  C09  SING  N  N   8  
Y5V  C11  N18  SING  N  N   9  
Y5V  C17  N18  DOUB  N  N  10  
Y5V  C17  C19  SING  N  N  11  
Y5V  C09  N08  SING  N  N  12  
Y5V  C20  C19  DOUB  Y  N  13  
Y5V  C20  C21  SING  Y  N  14  
Y5V  C19  C24  SING  Y  N  15  
Y5V  C21  C22  DOUB  Y  N  16  
Y5V  C24  C25  SING  N  N  17  
Y5V  C24  C23  DOUB  Y  N  18  
Y5V  N08  C07  SING  N  N  19  
Y5V  C22  C23  SING  Y  N  20  
Y5V  C07  C06  SING  N  N  21  
Y5V  C06  C05  SING  N  N  22  
Y5V  C04  C05  DOUB  Y  N  23  
Y5V  C04  C03  SING  Y  N  24  
Y5V  C05  C26  SING  Y  N  25  
Y5V  C01  O02  SING  N  N  26  
Y5V  O02  C03  SING  N  N  27  
Y5V  C03  C28  DOUB  Y  N  28  
Y5V  C26  C27  DOUB  Y  N  29  
Y5V  C28  C27  SING  Y  N  30  
Y5V  C28  O29  SING  N  N  31  
Y5V  C21  H1   SING  N  N  32  
Y5V  C20  H2   SING  N  N  33  
Y5V  C22  H3   SING  N  N  34  
Y5V  C23  H4   SING  N  N  35  
Y5V  C01  H5   SING  N  N  36  
Y5V  C01  H6   SING  N  N  37  
Y5V  C01  H7   SING  N  N  38  
Y5V  C04  H8   SING  N  N  39  
Y5V  C06  H9   SING  N  N  40  
Y5V  C06  H10  SING  N  N  41  
Y5V  C07  H11  SING  N  N  42  
Y5V  C07  H12  SING  N  N  43  
Y5V  C25  H13  SING  N  N  44  
Y5V  C25  H14  SING  N  N  45  
Y5V  C25  H15  SING  N  N  46  
Y5V  C26  H16  SING  N  N  47  
Y5V  C27  H17  SING  N  N  48  
Y5V  N08  H18  SING  N  N  49  
Y5V  N16  H19  SING  N  N  50  
Y5V  O13  H20  SING  N  N  51  
Y5V  O29  H21  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y5V  SMILES            ACDLabs               12.01  "c1ccc(c(c1)C2=NC(=C(C(N2)=O)O)C(NCCc3cc(c(cc3)O)OC)=O)C"  
Y5V  InChI             InChI                 1.03   "InChI=1S/C21H21N3O5/c1-12-5-3-4-6-14(12)19-23-17(18(26)21(28)24-19)20(27)22-10-9-13-7-8-15(25)16(11-13)29-2/h3-8,11,25-26H,9-10H2,1-2H3,(H,22,27)(H,23,24,28)"  
Y5V  InChIKey          InChI                 1.03   KEGVYPYJMJWBAI-UHFFFAOYSA-N  
Y5V  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccc1O"  
Y5V  SMILES            CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccc1O"  
Y5V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccc(c(c3)OC)O"  
Y5V  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccc(c(c3)OC)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y5V  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide"  
Y5V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[2-(3-methoxy-4-oxidanyl-phenyl)ethyl]-2-(2-methylphenyl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y5V  "Create component"  2021-02-05  RCSB  
Y5V  "Initial release"   2022-02-09  RCSB  
##
