data_Y3V
#

_chem_comp.id                                   Y3V
_chem_comp.name                                 "(2S)-N-(cyclopropylmethyl)-2-methyl-4-(1-methyl-1H-pyrrole-2-carbonyl)piperazine-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H24 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-03
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       304.387
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y3V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5S9H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y3V  N1   N1   N  0  1  N  N  N  -18.366  13.775  25.272  -1.498  -0.720  -0.520  N1   Y3V   1  
Y3V  N3   N2   N  0  1  N  N  N  -19.263  15.454  27.350   1.105  -0.825   0.305  N3   Y3V   2  
Y3V  C4   C1   C  0  1  N  N  N  -17.505  12.969  24.622  -2.831  -0.679  -0.325  C4   Y3V   3  
Y3V  C5   C2   C  0  1  Y  N  N  -16.461  13.510  23.819  -3.518   0.612  -0.221  C5   Y3V   4  
Y3V  C6   C3   C  0  1  Y  N  N  -15.689  14.623  24.043  -3.106   1.802  -0.785  C6   Y3V   5  
Y3V  C7   C4   C  0  1  Y  N  N  -14.791  14.760  22.983  -4.052   2.771  -0.436  C7   Y3V   6  
Y3V  C8   C5   C  0  1  Y  N  N  -15.013  13.741  22.101  -5.004   2.170   0.318  C8   Y3V   7  
Y3V  C10  C6   C  0  1  N  N  N  -18.563  15.197  24.982  -0.716   0.521  -0.602  C10  Y3V   8  
Y3V  C13  C7   C  0  1  N  N  N  -20.902  18.411  28.446   4.587   0.244  -0.183  C13  Y3V   9  
Y3V  C15  C8   C  0  1  N  N  N  -22.147  19.031  30.631   6.622   1.859  -0.490  C15  Y3V  10  
Y3V  C1   C9   C  0  1  N  N  N  -17.810  13.702  28.300   1.231  -3.260   0.107  C1   Y3V  11  
Y3V  C11  C10  C  0  1  N  N  N  -18.477  16.027  26.252   0.408   0.461   0.440  C11  Y3V  12  
Y3V  C12  C11  C  0  1  N  N  N  -19.971  16.166  28.251   2.438  -0.866   0.111  C12  Y3V  13  
Y3V  C14  C12  C  0  1  N  N  N  -20.883  18.940  29.846   5.163   1.657  -0.076  C14  Y3V  14  
Y3V  C16  C13  C  0  1  N  N  N  -21.494  20.272  30.108   6.233   1.906   0.989  C16  Y3V  15  
Y3V  C2   C14  C  0  1  N  N  R  -19.115  14.003  27.583   0.324  -2.062   0.393  C2   Y3V  16  
Y3V  C3   C15  C  0  1  N  N  N  -19.276  13.250  26.286  -0.800  -2.007  -0.649  C3   Y3V  17  
Y3V  C9   C16  C  0  1  N  N  N  -16.586  11.789  21.885  -5.479  -0.136   1.189  C9   Y3V  18  
Y3V  N2   N3   N  0  1  Y  N  N  -16.066  12.961  22.584  -4.694   0.857   0.451  N2   Y3V  19  
Y3V  N4   N4   N  0  1  N  N  N  -19.802  17.491  28.216   3.159   0.273   0.140  N4   Y3V  20  
Y3V  O1   O1   O  0  1  N  N  N  -17.644  11.739  24.660  -3.465  -1.714  -0.235  O1   Y3V  21  
Y3V  O2   O2   O  0  1  N  N  N  -20.725  15.604  29.079   2.991  -1.930  -0.090  O2   Y3V  22  
Y3V  H7   H1   H  0  1  N  N  N  -15.764  15.282  24.896  -2.220   1.956  -1.382  H7   Y3V  23  
Y3V  H8   H2   H  0  1  N  N  N  -14.049  15.538  22.878  -4.028   3.813  -0.716  H8   Y3V  24  
Y3V  H9   H3   H  0  1  N  N  N  -14.467  13.568  21.185  -5.870   2.657   0.741  H9   Y3V  25  
Y3V  H14  H4   H  0  1  N  N  N  -17.786  15.532  24.279  -0.286   0.618  -1.599  H14  Y3V  26  
Y3V  H13  H5   H  0  1  N  N  N  -19.554  15.338  24.526  -1.362   1.375  -0.395  H13  Y3V  27  
Y3V  H19  H6   H  0  1  N  N  N  -20.818  19.253  27.743   4.723  -0.128  -1.198  H19  Y3V  28  
Y3V  H18  H7   H  0  1  N  N  N  -21.852  17.884  28.275   5.105  -0.413   0.517  H18  Y3V  29  
Y3V  H22  H8   H  0  1  N  N  N  -23.093  18.680  30.193   7.172   0.985  -0.838  H22  Y3V  30  
Y3V  H21  H9   H  0  1  N  N  N  -22.141  18.819  31.710   6.883   2.802  -0.971  H21  Y3V  31  
Y3V  H2   H10  H  0  1  N  N  N  -17.761  14.283  29.233   1.639  -3.176  -0.900  H2   Y3V  32  
Y3V  H3   H11  H  0  1  N  N  N  -17.759  12.628  28.534   2.047  -3.279   0.830  H3   Y3V  33  
Y3V  H1   H12  H  0  1  N  N  N  -16.964  13.976  27.652   0.652  -4.181   0.189  H1   Y3V  34  
Y3V  H16  H13  H  0  1  N  N  N  -17.424  16.086  26.565  -0.016   0.545   1.441  H16  Y3V  35  
Y3V  H15  H14  H  0  1  N  N  N  -18.853  17.038  26.039   1.110   1.277   0.268  H15  Y3V  36  
Y3V  H20  H15  H  0  1  N  N  N  -19.978  18.709  30.427   4.464   2.467  -0.286  H20  Y3V  37  
Y3V  H24  H16  H  0  1  N  N  N  -21.961  20.835  29.286   6.527   1.062   1.614  H24  Y3V  38  
Y3V  H23  H17  H  0  1  N  N  N  -21.008  20.973  30.803   6.237   2.879   1.480  H23  Y3V  39  
Y3V  H4   H18  H  0  1  N  N  N  -19.932  13.687  28.248  -0.106  -2.157   1.390  H4   Y3V  40  
Y3V  H6   H19  H  0  1  N  N  N  -19.054  12.186  26.455  -1.503  -2.822  -0.473  H6   Y3V  41  
Y3V  H5   H20  H  0  1  N  N  N  -20.312  13.356  25.932  -0.377  -2.096  -1.650  H5   Y3V  42  
Y3V  H10  H21  H  0  1  N  N  N  -17.410  11.350  22.467  -5.200  -0.109   2.242  H10  Y3V  43  
Y3V  H12  H22  H  0  1  N  N  N  -16.956  12.088  20.893  -6.540   0.092   1.088  H12  Y3V  44  
Y3V  H11  H23  H  0  1  N  N  N  -15.783  11.046  21.768  -5.280  -1.129   0.786  H11  Y3V  45  
Y3V  H17  H24  H  0  1  N  N  N  -18.892  17.860  28.026   2.731   1.111   0.374  H17  Y3V  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y3V  C1   C2   SING  N  N   1  
Y3V  C2   C3   SING  N  N   2  
Y3V  C3   N1   SING  N  N   3  
Y3V  N1   C4   SING  N  N   4  
Y3V  C4   O1   DOUB  N  N   5  
Y3V  C4   C5   SING  N  N   6  
Y3V  C5   C6   DOUB  Y  N   7  
Y3V  C6   C7   SING  Y  N   8  
Y3V  C7   C8   DOUB  Y  N   9  
Y3V  C8   N2   SING  Y  N  10  
Y3V  N2   C9   SING  N  N  11  
Y3V  N1   C10  SING  N  N  12  
Y3V  C10  C11  SING  N  N  13  
Y3V  C11  N3   SING  N  N  14  
Y3V  N3   C12  SING  N  N  15  
Y3V  C12  O2   DOUB  N  N  16  
Y3V  C12  N4   SING  N  N  17  
Y3V  N4   C13  SING  N  N  18  
Y3V  C13  C14  SING  N  N  19  
Y3V  C14  C15  SING  N  N  20  
Y3V  C15  C16  SING  N  N  21  
Y3V  C2   N3   SING  N  N  22  
Y3V  C14  C16  SING  N  N  23  
Y3V  C5   N2   SING  Y  N  24  
Y3V  C6   H7   SING  N  N  25  
Y3V  C7   H8   SING  N  N  26  
Y3V  C8   H9   SING  N  N  27  
Y3V  C10  H14  SING  N  N  28  
Y3V  C10  H13  SING  N  N  29  
Y3V  C13  H19  SING  N  N  30  
Y3V  C13  H18  SING  N  N  31  
Y3V  C15  H22  SING  N  N  32  
Y3V  C15  H21  SING  N  N  33  
Y3V  C1   H2   SING  N  N  34  
Y3V  C1   H3   SING  N  N  35  
Y3V  C1   H1   SING  N  N  36  
Y3V  C11  H16  SING  N  N  37  
Y3V  C11  H15  SING  N  N  38  
Y3V  C14  H20  SING  N  N  39  
Y3V  C16  H24  SING  N  N  40  
Y3V  C16  H23  SING  N  N  41  
Y3V  C2   H4   SING  N  N  42  
Y3V  C3   H6   SING  N  N  43  
Y3V  C3   H5   SING  N  N  44  
Y3V  C9   H10  SING  N  N  45  
Y3V  C9   H12  SING  N  N  46  
Y3V  C9   H11  SING  N  N  47  
Y3V  N4   H17  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y3V  SMILES            ACDLabs               12.01  "N3(C(=O)c1cccn1C)CCN(C(=O)NCC2CC2)C(C)C3"  
Y3V  InChI             InChI                 1.03   "InChI=1S/C16H24N4O2/c1-12-11-19(15(21)14-4-3-7-18(14)2)8-9-20(12)16(22)17-10-13-5-6-13/h3-4,7,12-13H,5-6,8-11H2,1-2H3,(H,17,22)/t12-/m0/s1"  
Y3V  InChIKey          InChI                 1.03   XDZATLOJFOESFE-LBPRGKRZSA-N  
Y3V  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C"  
Y3V  SMILES            CACTVS                3.385  "C[CH]1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C"  
Y3V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C"  
Y3V  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y3V  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-N-(cyclopropylmethyl)-2-methyl-4-(1-methyl-1H-pyrrole-2-carbonyl)piperazine-1-carboxamide"  
Y3V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R})-~{N}-(cyclopropylmethyl)-2-methyl-4-(1-methylpyrrol-2-yl)carbonyl-piperazine-1-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y3V  "Create component"  2021-02-03  RCSB  
Y3V  "Initial release"   2021-02-17  RCSB  
##
