data_Y1V
# 
_chem_comp.id                                    Y1V 
_chem_comp.name                                  "(4R)-5-amino-L-leucine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H14 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               LEU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        146.188 
_chem_comp.one_letter_code                       L 
_chem_comp.three_letter_code                     Y1V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LIB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y1V C    C    C 0 1 N N N Y N Y 5.971 17.082 -4.981 -2.200 -0.252 0.033  C    Y1V 1  
Y1V O    O    O 0 1 N N N Y N Y 6.993 17.690 -5.323 -3.028 0.628  0.058  O    Y1V 2  
Y1V CB   CB   C 0 1 N N N Y N N 5.398 14.766 -5.669 0.119  0.235  0.764  CB   Y1V 3  
Y1V CG   CG   C 0 1 N N R Y N N 4.288 13.823 -6.213 1.558  0.430  0.283  CG   Y1V 4  
Y1V CD   CD   C 0 1 N N N Y N N 2.998 13.875 -5.393 2.054  -0.858 -0.377 CD   Y1V 5  
Y1V N    NE   N 0 1 N N N Y Y N 3.138 13.355 -4.020 3.390  -0.634 -0.945 NE   Y1V 6  
Y1V CM   CM   C 0 1 N N N N N N 4.806 12.369 -6.262 2.453  0.770  1.476  CM   Y1V 7  
Y1V CA   CQ   C 0 1 N N S Y N N 5.067 16.206 -5.946 -0.801 0.043  -0.443 CQ   Y1V 8  
Y1V NA   NA   N 0 1 N N N N N N 5.466 16.606 -7.333 -0.808 1.268  -1.254 NA   Y1V 9  
Y1V OXT  O1   O 0 1 N Y N Y N Y 5.486 17.117 -3.727 -2.525 -1.490 0.436  O1   Y1V 10 
Y1V HB3  HB3  H 0 1 N N N Y N N 5.492 14.621 -4.583 0.066  -0.645 1.405  HB3  Y1V 11 
Y1V HB2  HB2  H 0 1 N N N Y N N 6.352 14.516 -6.156 -0.198 1.113  1.327  HB2  Y1V 12 
Y1V HG2  HG2  H 0 1 N N N Y N N 4.054 14.135 -7.241 1.592  1.245  -0.441 HG2  Y1V 13 
Y1V HD2  HD2  H 0 1 N N N Y N N 2.668 14.923 -5.334 2.105  -1.652 0.369  HD2  Y1V 14 
Y1V HD3  HD3  H 0 1 N N N Y N N 2.234 13.278 -5.912 1.366  -1.148 -1.170 HD3  Y1V 15 
Y1V H    H    H 0 1 N N N Y Y N 2.259 13.421 -3.547 4.032  -0.302 -0.240 H    Y1V 16 
Y1V H2   H1   H 0 1 N Y N Y Y N 3.428 12.398 -4.054 3.740  -1.471 -1.386 H1   Y1V 17 
Y1V HM11 HM11 H 0 0 N N N N N N 4.014 11.710 -6.648 2.042  1.629  2.006  HM11 Y1V 18 
Y1V HM1  HM1  H 0 1 N N N N N N 5.683 12.314 -6.924 2.500  -0.085 2.151  HM1  Y1V 19 
Y1V HM2  HM2  H 0 1 N N N N N N 5.090 12.047 -5.249 3.456  1.008  1.122  HM2  Y1V 20 
Y1V HA   HA   H 0 1 N N N Y N N 4.003 16.414 -5.760 -0.440 -0.790 -1.046 HA   Y1V 21 
Y1V HN1  HN1  H 0 1 N N N N N N 5.232 17.567 -7.484 -1.357 1.145  -2.091 HN1  Y1V 22 
Y1V HN3  HN3  H 0 1 N N N N N N 6.452 16.481 -7.445 -1.139 2.056  -0.716 HN3  Y1V 23 
Y1V HXT  H3   H 0 1 N Y N Y N Y 6.044 17.664 -3.186 -3.434 -1.630 0.737  H3   Y1V 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y1V NA  CA   SING N N 1  
Y1V CM  CG   SING N N 2  
Y1V CG  CB   SING N N 3  
Y1V CG  CD   SING N N 4  
Y1V CA  CB   SING N N 5  
Y1V CA  C    SING N N 6  
Y1V CD  N    SING N N 7  
Y1V O   C    DOUB N N 8  
Y1V C   OXT  SING N N 9  
Y1V CB  HB3  SING N N 10 
Y1V CB  HB2  SING N N 11 
Y1V CG  HG2  SING N N 12 
Y1V CD  HD2  SING N N 13 
Y1V CD  HD3  SING N N 14 
Y1V N   H    SING N N 15 
Y1V N   H2   SING N N 16 
Y1V CM  HM11 SING N N 17 
Y1V CM  HM1  SING N N 18 
Y1V CM  HM2  SING N N 19 
Y1V CA  HA   SING N N 20 
Y1V NA  HN1  SING N N 21 
Y1V NA  HN3  SING N N 22 
Y1V OXT HXT  SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y1V SMILES           ACDLabs              12.01 "C(O)(=O)C(CC(CN)C)N"                                                                
Y1V InChI            InChI                1.03  "InChI=1S/C6H14N2O2/c1-4(3-7)2-5(8)6(9)10/h4-5H,2-3,7-8H2,1H3,(H,9,10)/t4-,5+/m1/s1" 
Y1V InChIKey         InChI                1.03  SKMVYVWGMUZLIX-UHNVWZDZSA-N                                                          
Y1V SMILES_CANONICAL CACTVS               3.385 "C[C@@H](CN)C[C@H](N)C(O)=O"                                                         
Y1V SMILES           CACTVS               3.385 "C[CH](CN)C[CH](N)C(O)=O"                                                            
Y1V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C[C@@H](C(=O)O)N)CN"                                                         
Y1V SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CC(C(=O)O)N)CN"                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y1V "SYSTEMATIC NAME" ACDLabs              12.01 "(4R)-5-amino-L-leucine"                                
Y1V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{R})-2,5-bis(azanyl)-4-methyl-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y1V "Create component" 2021-01-27 RCSB 
Y1V "Initial release"  2021-08-11 RCSB 
Y1V "Modify backbone"  2023-11-03 PDBE 
Y1V "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y1V 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
