data_XDV
# 
_chem_comp.id                                    XDV 
_chem_comp.name                                  "2-[2-(2-aminoethoxy)ethoxy]acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H14 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-12-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        162.187 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XDV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7KZL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XDV N10  N1  N 0 1 N N N N N N -37.173 -3.864 15.925 4.411  0.743  -0.434 N10  XDV 1  
XDV C02  C1  C 0 1 N N N N N N -39.122 -8.351 8.625  -3.678 1.169  0.322  C02  XDV 2  
XDV C03  C2  C 0 1 N N N N N N -38.870 -7.528 9.891  -3.064 -0.170 0.733  C03  XDV 3  
XDV C05  C3  C 0 1 N N N N N N -39.297 -5.320 10.615 -1.145 -1.566 0.392  C05  XDV 4  
XDV C06  C4  C 0 1 N N N N N N -37.965 -4.820 11.174 0.183  -1.640 -0.364 C06  XDV 5  
XDV C08  C5  C 0 1 N N N N N N -37.867 -4.180 13.460 2.330  -0.589 -0.541 C08  XDV 6  
XDV C09  C6  C 0 1 N N N N N N -37.158 -4.680 14.723 3.162  0.531  0.026  C09  XDV 7  
XDV N01  N2  N 0 1 N N N Y Y N -38.094 -8.042 7.647  -3.990 1.145  -1.114 N01  XDV 8  
XDV O04  O1  O 0 1 N N N N N N -39.014 -6.178 9.547  -1.807 -0.340 0.075  O04  XDV 9  
XDV O07  O2  O 0 1 N N N N N N -37.873 -5.219 12.518 1.055  -0.609 0.104  O07  XDV 10 
XDV O11  O3  O 0 1 N N N N N N -36.592 -5.730 14.721 2.709  1.243  0.897  O11  XDV 11 
XDV H101 H1  H 0 0 N N N N N N -36.709 -4.183 16.751 4.774  0.174  -1.131 H101 XDV 12 
XDV H102 H2  H 0 0 N N N N N N -37.648 -2.984 15.926 4.946  1.467  -0.071 H102 XDV 13 
XDV H021 H3  H 0 0 N N N N N N -40.110 -8.100 8.213  -4.593 1.339  0.890  H021 XDV 14 
XDV H022 H4  H 0 0 N N N N N N -39.088 -9.423 8.869  -2.969 1.972  0.526  H022 XDV 15 
XDV H032 H5  H 0 0 N N N N N N -39.601 -7.798 10.667 -2.914 -0.186 1.812  H032 XDV 16 
XDV H031 H6  H 0 0 N N N N N N -37.852 -7.715 10.265 -3.735 -0.980 0.447  H031 XDV 17 
XDV H052 H7  H 0 0 N N N N N N -39.899 -4.469 10.263 -1.777 -2.405 0.100  H052 XDV 18 
XDV H051 H8  H 0 0 N N N N N N -39.851 -5.863 11.395 -0.956 -1.610 1.464  H051 XDV 19 
XDV H062 H9  H 0 0 N N N N N N -37.134 -5.255 10.599 0.645  -2.612 -0.193 H062 XDV 20 
XDV H061 H10 H 0 0 N N N N N N -37.922 -3.723 11.108 0.002  -1.507 -1.431 H061 XDV 21 
XDV H082 H11 H 0 0 N N N N N N -37.331 -3.311 13.052 2.193  -0.434 -1.612 H082 XDV 22 
XDV H081 H12 H 0 0 N N N N N N -38.901 -3.892 13.703 2.836  -1.539 -0.374 H081 XDV 23 
XDV H1   H13 H 0 1 N N N Y Y N -38.252 -8.576 6.817  -4.595 0.370  -1.339 H1   XDV 24 
XDV H2   H14 H 0 1 N Y N Y Y N -38.126 -7.067 7.427  -4.397 2.020  -1.410 H2   XDV 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XDV N01 C02  SING N N 1  
XDV C02 C03  SING N N 2  
XDV O04 C03  SING N N 3  
XDV O04 C05  SING N N 4  
XDV C05 C06  SING N N 5  
XDV C06 O07  SING N N 6  
XDV O07 C08  SING N N 7  
XDV C08 C09  SING N N 8  
XDV O11 C09  DOUB N N 9  
XDV C09 N10  SING N N 10 
XDV N10 H101 SING N N 11 
XDV N10 H102 SING N N 12 
XDV C02 H021 SING N N 13 
XDV C02 H022 SING N N 14 
XDV C03 H032 SING N N 15 
XDV C03 H031 SING N N 16 
XDV C05 H052 SING N N 17 
XDV C05 H051 SING N N 18 
XDV C06 H062 SING N N 19 
XDV C06 H061 SING N N 20 
XDV C08 H082 SING N N 21 
XDV C08 H081 SING N N 22 
XDV N01 H1   SING N N 23 
XDV N01 H2   SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XDV SMILES           ACDLabs              12.01 "NC(COCCOCCN)=O"                                                
XDV InChI            InChI                1.03  "InChI=1S/C6H14N2O3/c7-1-2-10-3-4-11-5-6(8)9/h1-5,7H2,(H2,8,9)" 
XDV InChIKey         InChI                1.03  CDFONQZJZPNQML-UHFFFAOYSA-N                                     
XDV SMILES_CANONICAL CACTVS               3.385 "NCCOCCOCC(N)=O"                                                
XDV SMILES           CACTVS               3.385 "NCCOCCOCC(N)=O"                                                
XDV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(COCCOCC(=O)N)N"                                              
XDV SMILES           "OpenEye OEToolkits" 2.0.7 "C(COCCOCC(=O)N)N"                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XDV "SYSTEMATIC NAME" ACDLabs              12.01 "2-[2-(2-aminoethoxy)ethoxy]acetamide"   
XDV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2-(2-azanylethoxy)ethoxy]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XDV "Create component" 2020-12-11 RCSB 
XDV "Initial release"  2020-12-23 RCSB 
XDV "Modify backbone"  2023-11-03 PDBE 
XDV "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XDV 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
