data_X5V
# 
_chem_comp.id                                    X5V 
_chem_comp.name                                  "N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine" 
_chem_comp.type                                  "L-peptide NH3 amino terminus" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C17 H16 N2 O8" 
_chem_comp.mon_nstd_parent_comp_id               THR 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        376.318 
_chem_comp.one_letter_code                       T 
_chem_comp.three_letter_code                     X5V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8H98 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X5V N1  N1  N 0 1 N N N N N N 0.155  12.941 48.771 -1.439 -0.670 0.201  N1  X5V 1  
X5V C1  C1  C 0 1 Y N N N N N 2.152  14.412 44.144 -5.191 2.663  0.848  C1  X5V 2  
X5V O1  O1  O 0 1 N N N N N N 1.360  16.493 45.172 -6.851 1.933  -0.689 O1  X5V 3  
X5V C2  C2  C 0 1 Y N N N N N 2.342  13.030 44.261 -3.942 2.512  1.425  C2  X5V 4  
X5V C3  C3  C 0 1 Y N N N N N 1.976  12.337 45.424 -3.115 1.481  1.037  C3  X5V 5  
X5V C4  C4  C 0 1 Y N N N N N 1.417  13.041 46.501 -3.536 0.580  0.054  C4  X5V 6  
X5V C5  C5  C 0 1 N N N N N N 0.996  12.272 47.770 -2.654 -0.526 -0.364 C5  X5V 7  
X5V C6  C6  C 0 1 Y N N N N N 1.583  15.103 45.222 -5.623 1.779  -0.127 C6  X5V 8  
X5V C7  C7  C 0 1 N N N N N N -1.762 12.776 50.224 -0.907 -3.009 0.567  C7  X5V 9  
X5V C8  C8  C 0 1 N N R N N N 0.363  12.874 51.172 0.895  -1.386 0.050  C8  X5V 10 
X5V C9  C9  C 0 1 N N N N N N 1.477  11.888 51.549 1.209  -0.060 -0.644 C9  X5V 11 
X5V C10 C10 C 0 1 Y N N N N N 2.662  12.452 52.374 2.674  0.255  -0.487 C10 X5V 12 
X5V C11 C11 C 0 1 Y N N N N N 3.469  11.495 53.030 3.111  0.982  0.604  C11 X5V 13 
X5V C12 C12 C 0 1 Y N N N N N 4.555  11.916 53.785 4.456  1.271  0.749  C12 X5V 14 
X5V C13 C13 C 0 1 Y N N N N N 4.846  13.295 53.885 5.362  0.833  -0.198 C13 X5V 15 
X5V C14 C14 C 0 1 Y N N N N N 4.054  14.255 53.227 4.925  0.105  -1.289 C14 X5V 16 
X5V C15 C15 C 0 1 Y N N N N N 2.957  13.829 52.482 3.581  -0.188 -1.431 C15 X5V 17 
X5V C16 C16 C 0 1 Y N N N N N 1.217  14.432 46.385 -4.799 0.732  -0.530 C16 X5V 18 
X5V O2  O2  O 0 1 N N N N N N -2.192 13.649 49.588 -1.793 -2.979 1.388  O2  X5V 19 
X5V C61 C17 C 0 1 N N S N N N -0.338 12.300 50.004 -0.563 -1.768 -0.215 C61 X5V 20 
X5V N11 N2  N 0 1 N N N N N N 6.013  13.717 54.672 6.801  1.143  -0.044 N11 X5V 21 
X5V O3  O3  O 0 1 N N N N N N 6.057  15.073 55.054 7.600  0.756  -0.878 O3  X5V 22 
X5V O4  O4  O 0 1 N N N N N N 7.056  12.775 54.988 7.187  1.784  0.917  O4  X5V 23 
X5V O5  O5  O 0 1 N N N N N N 0.884  14.109 50.747 1.103  -1.249 1.457  O5  X5V 24 
X5V O6  O6  O 0 1 N N N N N N 1.322  11.131 47.908 -3.023 -1.308 -1.219 O6  X5V 25 
X5V O7  O7  O 0 1 N N N N N N 0.655  15.207 47.427 -5.218 -0.137 -1.485 O7  X5V 26 
X5V H1  H1  H 0 1 N N N N N N -0.100 13.894 48.606 -1.143 -0.044 0.880  H1  X5V 27 
X5V H2  H2  H 0 1 N N N N N N 2.438  14.934 43.243 -5.834 3.472  1.162  H2  X5V 28 
X5V H3  H3  H 0 1 N N N N N N 0.970  16.781 45.989 -6.856 2.494  -1.476 H3  X5V 29 
X5V H4  H4  H 0 1 N N N N N N 2.780  12.486 43.438 -3.613 3.207  2.184  H4  X5V 30 
X5V H5  H5  H 0 1 N N N N N N 2.123  11.269 45.490 -2.141 1.368  1.491  H5  X5V 31 
X5V H7  H7  H 0 1 N N N N N N -0.330 12.995 52.018 1.551  -2.164 -0.340 H7  X5V 32 
X5V H8  H8  H 0 1 N N N N N N 1.019  11.078 52.136 0.965  -0.137 -1.704 H8  X5V 33 
X5V H9  H9  H 0 1 N N N N N N 1.888  11.477 50.615 0.616  0.736  -0.193 H9  X5V 34 
X5V H10 H10 H 0 1 N N N N N N 3.242  10.443 52.944 2.403  1.325  1.344  H10 X5V 35 
X5V H11 H11 H 0 1 N N N N N N 5.175  11.193 54.294 4.797  1.840  1.601  H11 X5V 36 
X5V H12 H12 H 0 1 N N N N N N 4.293  15.306 53.299 5.633  -0.237 -2.029 H12 X5V 37 
X5V H13 H13 H 0 1 N N N N N N 2.330  14.554 51.985 3.240  -0.759 -2.282 H13 X5V 38 
X5V H14 H14 H 0 1 N N N N N N -0.271 11.203 49.968 -0.701 -1.960 -1.279 H14 X5V 39 
X5V H15 H15 H 0 1 N N N N N N 1.348  14.522 51.466 0.551  -0.572 1.872  H15 X5V 40 
X5V H16 H16 H 0 1 N N N N N N 0.447  14.644 48.164 -4.989 0.128  -2.386 H16 X5V 41 
X5V O8  O8  O 0 1 N Y N N N N -2.482 12.143 51.268 -0.230 -4.148 0.353  O8  X5V 42 
X5V H6  H6  H 0 1 N N N N N N -3.340 12.543 51.350 -0.486 -4.918 0.879  H6  X5V 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X5V C1  C2  DOUB Y N 1  
X5V C1  C6  SING Y N 2  
X5V C2  C3  SING Y N 3  
X5V O1  C6  SING N N 4  
X5V C6  C16 DOUB Y N 5  
X5V C3  C4  DOUB Y N 6  
X5V C16 C4  SING Y N 7  
X5V C16 O7  SING N N 8  
X5V C4  C5  SING N N 9  
X5V C5  O6  DOUB N N 10 
X5V C5  N1  SING N N 11 
X5V N1  C61 SING N N 12 
X5V O2  C7  DOUB N N 13 
X5V C61 C7  SING N N 14 
X5V C61 C8  SING N N 15 
X5V O5  C8  SING N N 16 
X5V C8  C9  SING N N 17 
X5V C9  C10 SING N N 18 
X5V C10 C15 DOUB Y N 19 
X5V C10 C11 SING Y N 20 
X5V C15 C14 SING Y N 21 
X5V C11 C12 DOUB Y N 22 
X5V C14 C13 DOUB Y N 23 
X5V C12 C13 SING Y N 24 
X5V C13 N11 SING N N 25 
X5V N11 O4  DOUB N N 26 
X5V N11 O3  DOUB N N 27 
X5V N1  H1  SING N N 28 
X5V C1  H2  SING N N 29 
X5V O1  H3  SING N N 30 
X5V C2  H4  SING N N 31 
X5V C3  H5  SING N N 32 
X5V C8  H7  SING N N 33 
X5V C9  H8  SING N N 34 
X5V C9  H9  SING N N 35 
X5V C11 H10 SING N N 36 
X5V C12 H11 SING N N 37 
X5V C14 H12 SING N N 38 
X5V C15 H13 SING N N 39 
X5V C61 H14 SING N N 40 
X5V O5  H15 SING N N 41 
X5V O7  H16 SING N N 42 
X5V C7  O8  SING N N 43 
X5V O8  H6  SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X5V SMILES           ACDLabs              12.01 "Oc1c(cccc1O)C(=O)NC(C(=O)O)C(O)Cc1ccc(cc1)N(=O)=O"                                                                                                         
X5V InChI            InChI                1.06  "InChI=1S/C17H16N2O8/c20-12-3-1-2-11(15(12)22)16(23)18-14(17(24)25)13(21)8-9-4-6-10(7-5-9)19(26)27/h1-7,13-14,20-22H,8H2,(H,18,23)(H,24,25)/t13-,14+/m1/s1" 
X5V InChIKey         InChI                1.06  IKEPVTXZQSIGBO-KGLIPLIRSA-N                                                                                                                                 
X5V SMILES_CANONICAL CACTVS               3.385 "O[C@H](Cc1ccc(cc1)[N](=O)=O)[C@H](NC(=O)c2cccc(O)c2O)C(O)=O"                                                                                               
X5V SMILES           CACTVS               3.385 "O[CH](Cc1ccc(cc1)[N](=O)=O)[CH](NC(=O)c2cccc(O)c2O)C(O)=O"                                                                                                 
X5V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)O)O)C(=O)N[C@@H]([C@@H](Cc2ccc(cc2)N(=O)=O)O)C(=O)O"                                                                                           
X5V SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)O)O)C(=O)NC(C(Cc2ccc(cc2)N(=O)=O)O)C(=O)O"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X5V "SYSTEMATIC NAME" ACDLabs              12.01 "N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine"                                              
X5V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-4-(4-nitrophenyl)-3-oxidanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X5V "Create component" 2022-10-31 RCSB 
X5V "Initial release"  2023-02-08 RCSB 
X5V "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 X5V ARG None "Covalent chemical modification" "Amino-acid side chain" "Any position" C7 NH2 ? ? 
2 X5V LYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C7 NZ  ? ? 
3 X5V TYR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C7 OH  ? ? 
# 
