data_X1V
#

_chem_comp.id                                   X1V
_chem_comp.name                                 "5-chloranyl-N-[[(4S,15R)-2,5,13,16-tetrakis(oxidanylidene)-15-propan-2-yl-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H32 Cl N5 O5 S3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "macrocycle X1vE; 5-chloro-N-[[(4S,15R)-15-isopropyl-2,5,13,16-tetraoxo-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-26
_chem_comp.pdbx_modified_date                   2022-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       626.211
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X1V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Z48
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X1V  C01  C1   C   0  1  Y  N  N  34.097  -0.454  63.714   1.630   1.859  -1.520  C01  X1V   1  
X1V  C02  C2   C   0  1  N  N  N  32.701  -0.075  64.172   1.739   0.420  -1.842  C02  X1V   2  
X1V  O03  O1   O   0  1  N  N  N  32.395   0.005  65.255   2.632   0.009  -2.557  O03  X1V   3  
X1V  N04  N1   N   0  1  N  N  N  31.729   0.166  63.204   0.813  -0.438  -1.316  N04  X1V   4  
X1V  C05  C3   C   0  1  N  N  S  30.374   0.468  63.487   1.012  -1.863  -1.667  C05  X1V   5  
X1V  C06  C4   C   0  1  N  N  N  30.042   1.943  63.567   1.743  -2.576  -0.528  C06  X1V   6  
X1V  N07  N2   N   0  1  N  N  N  29.862   2.442  62.261   2.991  -1.870  -0.231  N07  X1V   7  
X1V  C08  C5   C   0  1  N  N  N  28.615   2.455  61.614   3.805  -2.321   0.744  C08  X1V   8  
X1V  O09  O2   O   0  1  N  N  N  27.685   2.017  62.106   3.503  -3.315   1.378  O09  X1V   9  
X1V  C10  C6   C   0  1  Y  N  N  28.659   2.977  60.200   5.054  -1.615   1.041  C10  X1V  10  
X1V  C11  C7   C   0  1  Y  N  N  29.643   3.946  59.829   5.958  -1.973   2.001  C11  X1V  11  
X1V  C12  C8   C   0  1  Y  N  N  29.465   4.216  58.331   7.044  -1.134   2.066  C12  X1V  12  
X1V  C13  C9   C   0  1  Y  N  N  28.406   3.366  57.865   7.032  -0.122   1.188  C13  X1V  13  
X1V  CL1  CL1  CL  0  0  N  N  N  27.985   3.444  56.189   8.278   1.080   1.055  CL1  X1V  14  
X1V  S15  S1   S   0  1  Y  N  N  27.722   2.433  59.005   5.633  -0.176   0.213  S15  X1V  15  
X1V  C16  C10  C   0  1  N  N  N  29.521  -0.345  62.508  -0.339  -2.499  -1.878  C16  X1V  16  
X1V  O17  O3   O   0  1  N  N  N  29.896  -0.612  61.488  -1.120  -2.030  -2.679  O17  X1V  17  
X1V  N18  N3   N   0  1  N  N  N  28.203  -0.769  62.845  -0.670  -3.606  -1.158  N18  X1V  18  
X1V  C19  C11  C   0  1  N  N  N  27.392  -1.504  61.961  -1.991  -4.208  -1.434  C19  X1V  19  
X1V  C20  C12  C   0  1  N  N  N  27.857  -2.939  61.749  -2.838  -4.141  -0.162  C20  X1V  20  
X1V  S21  S2   S   0  1  N  N  N  27.264  -4.011  63.045  -4.439  -3.376  -0.539  S21  X1V  21  
X1V  S22  S3   S   0  1  N  N  N  27.567  -6.030  62.756  -5.253  -3.067   1.317  S22  X1V  22  
X1V  C23  C13  C   0  1  N  N  N  29.186  -6.426  63.391  -6.099  -1.473   1.134  C23  X1V  23  
X1V  C24  C14  C   0  1  N  N  N  30.157  -6.868  62.305  -5.559  -0.488   2.173  C24  X1V  24  
X1V  C25  C15  C   0  1  N  N  N  30.921  -5.740  61.621  -5.415   0.873   1.542  C25  X1V  25  
X1V  O26  O4   O   0  1  N  N  N  30.736  -4.658  61.870  -6.354   1.390   0.977  O26  X1V  26  
X1V  N27  N4   N   0  1  N  N  N  31.893  -6.044  60.665  -4.216   1.515   1.616  N27  X1V  27  
X1V  C28  C16  C   0  1  N  N  R  32.616  -4.969  60.059  -4.105   2.780   0.862  C28  X1V  28  
X1V  C29  C17  C   0  1  N  N  N  33.130  -5.350  58.685  -4.208   2.493  -0.637  C29  X1V  29  
X1V  C30  C18  C   0  1  N  N  N  32.052  -5.772  57.736  -5.584   1.902  -0.950  C30  X1V  30  
X1V  C31  C19  C   0  1  N  N  N  34.093  -6.486  58.867  -4.021   3.794  -1.419  C31  X1V  31  
X1V  C32  C20  C   0  1  N  N  N  33.756  -4.374  60.886  -2.773   3.417   1.163  C32  X1V  32  
X1V  O33  O5   O   0  1  N  N  N  34.094  -4.842  61.852  -2.533   3.858   2.267  O33  X1V  33  
X1V  N34  N5   N   0  1  N  N  N  34.486  -3.265  60.441  -1.841   3.488   0.164  N34  X1V  34  
X1V  C35  C21  C   0  1  N  N  N  35.606  -2.785  61.191  -0.571   4.153   0.535  C35  X1V  35  
X1V  C36  C22  C   0  1  Y  N  N  35.424  -1.753  62.268   0.520   3.657  -0.379  C36  X1V  36  
X1V  C37  C23  C   0  1  Y  N  N  36.562  -1.212  62.812   1.428   4.552  -0.917  C37  X1V  37  
X1V  C38  C24  C   0  1  Y  N  N  36.460  -0.288  63.797   2.437   4.108  -1.752  C38  X1V  38  
X1V  C39  C25  C   0  1  Y  N  N  35.224   0.093  64.229   2.543   2.767  -2.056  C39  X1V  39  
X1V  C40  C26  C   0  1  Y  N  N  34.207  -1.387  62.735   0.616   2.313  -0.674  C40  X1V  40  
X1V  H1   H1   H   0  1  N  N  N  32.006   0.123  62.244   0.082  -0.136  -0.755  H1   X1V  41  
X1V  H2   H2   H   0  1  N  N  N  30.155   0.057  64.483   1.601  -1.937  -2.582  H2   X1V  42  
X1V  H3   H3   H   0  1  N  N  N  30.867   2.481  64.057   1.110  -2.585   0.360  H3   X1V  43  
X1V  H4   H4   H   0  1  N  N  N  29.117   2.082  64.146   1.966  -3.601  -0.824  H4   X1V  44  
X1V  H5   H5   H   0  1  N  N  N  30.657   2.803  61.773   3.233  -1.078  -0.736  H5   X1V  45  
X1V  H6   H6   H   0  1  N  N  N  30.373   4.401  60.481   5.831  -2.830   2.646  H6   X1V  46  
X1V  H7   H7   H   0  1  N  N  N  30.032   4.917  57.736   7.848  -1.280   2.772  H7   X1V  47  
X1V  H8   H8   H   0  1  N  N  N  27.840  -0.535  63.747  -0.068  -3.981  -0.496  H8   X1V  48  
X1V  H9   H9   H   0  1  N  N  N  27.389  -0.993  60.987  -2.485  -3.654  -2.232  H9   X1V  49  
X1V  H10  H10  H   0  1  N  N  N  26.370  -1.527  62.366  -1.863  -5.247  -1.736  H10  X1V  50  
X1V  H11  H11  H   0  1  N  N  N  27.475  -3.300  60.783  -2.998  -5.148   0.222  H11  X1V  51  
X1V  H12  H12  H   0  1  N  N  N  28.957  -2.962  61.740  -2.319  -3.545   0.589  H12  X1V  52  
X1V  H13  H13  H   0  1  N  N  N  29.086  -7.240  64.124  -5.921  -1.080   0.133  H13  X1V  53  
X1V  H14  H14  H   0  1  N  N  N  29.596  -5.534  63.887  -7.169  -1.611   1.285  H14  X1V  54  
X1V  H15  H15  H   0  1  N  N  N  29.585  -7.407  61.536  -6.252  -0.428   3.012  H15  X1V  55  
X1V  H16  H16  H   0  1  N  N  N  30.891  -7.549  62.761  -4.587  -0.829   2.528  H16  X1V  56  
X1V  H17  H17  H   0  1  N  N  N  32.079  -6.993  60.410  -3.477   1.161   2.134  H17  X1V  57  
X1V  H18  H18  H   0  1  N  N  N  31.900  -4.149  59.899  -4.907   3.454   1.161  H18  X1V  58  
X1V  H19  H19  H   0  1  N  N  N  33.667  -4.491  58.257  -3.433   1.782  -0.925  H19  X1V  59  
X1V  H20  H20  H   0  1  N  N  N  31.341  -4.944  57.597  -5.752   1.923  -2.027  H20  X1V  60  
X1V  H21  H21  H   0  1  N  N  N  32.500  -6.037  56.767  -5.627   0.872  -0.596  H21  X1V  61  
X1V  H22  H22  H   0  1  N  N  N  31.523  -6.645  58.147  -6.354   2.490  -0.451  H22  X1V  62  
X1V  H23  H23  H   0  1  N  N  N  34.889  -6.184  59.563  -3.115   4.296  -1.079  H23  X1V  63  
X1V  H24  H24  H   0  1  N  N  N  33.559  -7.357  59.275  -3.934   3.570  -2.483  H24  X1V  64  
X1V  H25  H25  H   0  1  N  N  N  34.536  -6.750  57.896  -4.881   4.444  -1.254  H25  X1V  65  
X1V  H26  H26  H   0  1  N  N  N  34.223  -2.805  59.593  -2.001   3.128  -0.723  H26  X1V  66  
X1V  H27  H27  H   0  1  N  N  N  36.062  -3.663  61.672  -0.678   5.232   0.424  H27  X1V  67  
X1V  H28  H28  H   0  1  N  N  N  36.312  -2.358  60.463  -0.320   3.912   1.568  H28  X1V  68  
X1V  H29  H29  H   0  1  N  N  N  37.534  -1.521  62.457   1.347   5.604  -0.684  H29  X1V  69  
X1V  H30  H30  H   0  1  N  N  N  37.348   0.142  64.236   3.143   4.813  -2.167  H30  X1V  70  
X1V  H31  H31  H   0  1  N  N  N  35.142   0.847  64.998   3.331   2.420  -2.708  H31  X1V  71  
X1V  H32  H32  H   0  1  N  N  N  33.317  -1.841  62.325  -0.093   1.614  -0.255  H32  X1V  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X1V  CL1  C13  SING  N  N   1  
X1V  C30  C29  SING  N  N   2  
X1V  C13  C12  DOUB  Y  N   3  
X1V  C13  S15  SING  Y  N   4  
X1V  C12  C11  SING  Y  N   5  
X1V  C29  C31  SING  N  N   6  
X1V  C29  C28  SING  N  N   7  
X1V  S15  C10  SING  Y  N   8  
X1V  C11  C10  DOUB  Y  N   9  
X1V  C28  N27  SING  N  N  10  
X1V  C28  C32  SING  N  N  11  
X1V  C10  C08  SING  N  N  12  
X1V  N34  C32  SING  N  N  13  
X1V  N34  C35  SING  N  N  14  
X1V  N27  C25  SING  N  N  15  
X1V  C32  O33  DOUB  N  N  16  
X1V  C35  C36  SING  N  N  17  
X1V  O17  C16  DOUB  N  N  18  
X1V  C08  O09  DOUB  N  N  19  
X1V  C08  N07  SING  N  N  20  
X1V  C25  O26  DOUB  N  N  21  
X1V  C25  C24  SING  N  N  22  
X1V  C20  C19  SING  N  N  23  
X1V  C20  S21  SING  N  N  24  
X1V  C19  N18  SING  N  N  25  
X1V  N07  C06  SING  N  N  26  
X1V  C36  C40  DOUB  Y  N  27  
X1V  C36  C37  SING  Y  N  28  
X1V  C24  C23  SING  N  N  29  
X1V  C16  N18  SING  N  N  30  
X1V  C16  C05  SING  N  N  31  
X1V  C40  C01  SING  Y  N  32  
X1V  S22  S21  SING  N  N  33  
X1V  S22  C23  SING  N  N  34  
X1V  C37  C38  DOUB  Y  N  35  
X1V  N04  C05  SING  N  N  36  
X1V  N04  C02  SING  N  N  37  
X1V  C05  C06  SING  N  N  38  
X1V  C01  C02  SING  N  N  39  
X1V  C01  C39  DOUB  Y  N  40  
X1V  C38  C39  SING  Y  N  41  
X1V  C02  O03  DOUB  N  N  42  
X1V  N04  H1   SING  N  N  43  
X1V  C05  H2   SING  N  N  44  
X1V  C06  H3   SING  N  N  45  
X1V  C06  H4   SING  N  N  46  
X1V  N07  H5   SING  N  N  47  
X1V  C11  H6   SING  N  N  48  
X1V  C12  H7   SING  N  N  49  
X1V  N18  H8   SING  N  N  50  
X1V  C19  H9   SING  N  N  51  
X1V  C19  H10  SING  N  N  52  
X1V  C20  H11  SING  N  N  53  
X1V  C20  H12  SING  N  N  54  
X1V  C23  H13  SING  N  N  55  
X1V  C23  H14  SING  N  N  56  
X1V  C24  H15  SING  N  N  57  
X1V  C24  H16  SING  N  N  58  
X1V  N27  H17  SING  N  N  59  
X1V  C28  H18  SING  N  N  60  
X1V  C29  H19  SING  N  N  61  
X1V  C30  H20  SING  N  N  62  
X1V  C30  H21  SING  N  N  63  
X1V  C30  H22  SING  N  N  64  
X1V  C31  H23  SING  N  N  65  
X1V  C31  H24  SING  N  N  66  
X1V  C31  H25  SING  N  N  67  
X1V  N34  H26  SING  N  N  68  
X1V  C35  H27  SING  N  N  69  
X1V  C35  H28  SING  N  N  70  
X1V  C37  H29  SING  N  N  71  
X1V  C38  H30  SING  N  N  72  
X1V  C39  H31  SING  N  N  73  
X1V  C40  H32  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X1V  InChI             InChI                 1.03   "InChI=1S/C26H32ClN5O5S3/c1-15(2)22-26(37)29-13-16-4-3-5-17(12-16)23(34)31-18(14-30-25(36)19-6-7-20(27)40-19)24(35)28-9-11-39-38-10-8-21(33)32-22/h3-7,12,15,18,22H,8-11,13-14H2,1-2H3,(H,28,35)(H,29,37)(H,30,36)(H,31,34)(H,32,33)/t18-,22+/m0/s1"  
X1V  InChIKey          InChI                 1.03   YNRUDSNJNOWNHB-PGRDOPGGSA-N  
X1V  SMILES_CANONICAL  CACTVS                3.385  "CC(C)[C@H]1NC(=O)CCSSCCNC(=O)[C@H](CNC(=O)c2sc(Cl)cc2)NC(=O)c3cccc(CNC1=O)c3"  
X1V  SMILES            CACTVS                3.385  "CC(C)[CH]1NC(=O)CCSSCCNC(=O)[CH](CNC(=O)c2sc(Cl)cc2)NC(=O)c3cccc(CNC1=O)c3"  
X1V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)[C@@H]1C(=O)NCc2cccc(c2)C(=O)N[C@H](C(=O)NCCSSCCC(=O)N1)CNC(=O)c3ccc(s3)Cl"  
X1V  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)C1C(=O)NCc2cccc(c2)C(=O)NC(C(=O)NCCSSCCC(=O)N1)CNC(=O)c3ccc(s3)Cl"  
#
_pdbx_chem_comp_identifier.comp_id          X1V
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "5-chloranyl-~{N}-[[(4~{S},15~{R})-2,5,13,16-tetrakis(oxidanylidene)-15-propan-2-yl-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  X1V  "macrocycle X1vE"                                                                                                                                                      AUTHOR  ?  
2  X1V  "5-chloro-N-[[(4S,15R)-15-isopropyl-2,5,13,16-tetraoxo-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide"  PDB     ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X1V  "Create component"  2020-05-26  PDBE  
X1V  "Modify synonyms"   2021-08-28  PDBE  
X1V  "Initial release"   2022-06-01  RCSB  
##
