data_WUV
#

_chem_comp.id                                   WUV
_chem_comp.name                                 "5'-thiothymidine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N2 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-17
_chem_comp.pdbx_modified_date                   2020-11-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       258.294
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WUV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5S71
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WUV  C10  C1   C  0  1  N  N  N  4.933   -98.994  16.600   3.384  -0.583   0.567  C10  WUV   1  
WUV  C13  C2   C  0  1  N  N  N  4.072   -96.655  21.253  -1.219  -0.031   0.898  C13  WUV   2  
WUV  C01  C3   C  0  1  N  N  N  7.865   -95.889  19.536  -4.540  -0.237  -1.711  C01  WUV   3  
WUV  C02  C4   C  0  1  N  N  N  6.494   -96.184  20.136  -3.354  -0.154  -0.786  C02  WUV   4  
WUV  C03  C5   C  0  1  N  N  N  5.675   -97.171  19.655  -2.136   0.179  -1.263  C03  WUV   5  
WUV  N04  N1   N  0  1  N  N  N  4.511   -97.402  20.246  -1.066   0.233  -0.412  N04  WUV   6  
WUV  C05  C6   C  0  1  N  N  R  3.607   -98.393  19.687   0.259   0.582  -0.932  C05  WUV   7  
WUV  C06  C7   C  0  1  N  N  N  2.880   -97.626  18.506   0.726   1.918  -0.322  C06  WUV   8  
WUV  C07  C8   C  0  1  N  N  S  2.760   -98.685  17.366   2.055   1.566   0.388  C07  WUV   9  
WUV  O08  O1   O  0  1  N  N  N  1.532   -99.449  17.665   3.031   2.590   0.185  O08  WUV  10  
WUV  C09  C9   C  0  1  N  N  S  3.824   -99.421  17.501   2.471   0.256  -0.329  C09  WUV  11  
WUV  S11  S1   S  0  1  N  N  N  6.413  -100.044  16.809   3.969  -2.032  -0.355  S11  WUV  12  
WUV  O12  O2   O  0  1  N  N  N  4.275   -99.349  19.124   1.214  -0.423  -0.551  O12  WUV  13  
WUV  O14  O3   O  0  1  N  N  N  3.016   -96.899  21.743  -0.255   0.028   1.638  O14  WUV  14  
WUV  N15  N2   N  0  1  N  N  N  4.845   -95.682  21.734  -2.424  -0.354   1.403  N15  WUV  15  
WUV  C16  C10  C  0  1  N  N  N  6.034   -95.447  21.191  -3.502  -0.424   0.596  C16  WUV  16  
WUV  O17  O4   O  0  1  N  N  N  6.708   -94.565  21.571  -4.591  -0.726   1.050  O17  WUV  17  
WUV  H1   H1   H  0  1  N  N  N  5.199   -97.952  16.831   4.238   0.018   0.879  H1   WUV  18  
WUV  H2   H2   H  0  1  N  N  N  4.591   -99.062  15.557   2.829  -0.911   1.446  H2   WUV  19  
WUV  H3   H3   H  0  1  N  N  N  8.335   -95.059  20.084  -5.426  -0.518  -1.142  H3   WUV  20  
WUV  H4   H4   H  0  1  N  N  N  8.499   -96.785  19.612  -4.703   0.733  -2.182  H4   WUV  21  
WUV  H5   H5   H  0  1  N  N  N  7.750   -95.610  18.478  -4.350  -0.986  -2.480  H5   WUV  22  
WUV  H6   H6   H  0  1  N  N  N  5.976   -97.757  18.799  -2.003   0.388  -2.315  H6   WUV  23  
WUV  H7   H7   H  0  1  N  N  N  2.865   -98.729  20.426   0.220   0.664  -2.019  H7   WUV  24  
WUV  H8   H8   H  0  1  N  N  N  3.479   -96.765  18.175   0.896   2.656  -1.106  H8   WUV  25  
WUV  H9   H9   H  0  1  N  N  N  1.885   -97.280  18.822  -0.007   2.286   0.395  H9   WUV  26  
WUV  H10  H10  H  0  1  N  N  N  2.684   -98.180  16.392   1.893   1.391   1.452  H10  WUV  27  
WUV  H11  H11  H  0  1  N  N  N  0.774   -98.886  17.558   2.816   3.429   0.615  H11  WUV  28  
WUV  H12  H12  H  0  1  N  N  N  3.601  -100.478  17.294   2.962   0.477  -1.277  H12  WUV  29  
WUV  H13  H13  H  0  1  N  N  N  7.241   -99.518  15.956   4.747  -2.666   0.541  H13  WUV  30  
WUV  H14  H14  H  0  1  N  N  N  4.530   -95.128  22.505  -2.517  -0.538   2.351  H14  WUV  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WUV  C10  S11  SING  N  N   1  
WUV  C10  C09  SING  N  N   2  
WUV  C07  C09  SING  N  N   3  
WUV  C07  O08  SING  N  N   4  
WUV  C07  C06  SING  N  N   5  
WUV  C09  O12  SING  N  N   6  
WUV  C06  C05  SING  N  N   7  
WUV  O12  C05  SING  N  N   8  
WUV  C01  C02  SING  N  N   9  
WUV  C03  C02  DOUB  N  N  10  
WUV  C03  N04  SING  N  N  11  
WUV  C05  N04  SING  N  N  12  
WUV  C02  C16  SING  N  N  13  
WUV  N04  C13  SING  N  N  14  
WUV  C16  O17  DOUB  N  N  15  
WUV  C16  N15  SING  N  N  16  
WUV  C13  N15  SING  N  N  17  
WUV  C13  O14  DOUB  N  N  18  
WUV  C10  H1   SING  N  N  19  
WUV  C10  H2   SING  N  N  20  
WUV  C01  H3   SING  N  N  21  
WUV  C01  H4   SING  N  N  22  
WUV  C01  H5   SING  N  N  23  
WUV  C03  H6   SING  N  N  24  
WUV  C05  H7   SING  N  N  25  
WUV  C06  H8   SING  N  N  26  
WUV  C06  H9   SING  N  N  27  
WUV  C07  H10  SING  N  N  28  
WUV  O08  H11  SING  N  N  29  
WUV  C09  H12  SING  N  N  30  
WUV  S11  H13  SING  N  N  31  
WUV  N15  H14  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WUV  SMILES            ACDLabs               12.01  "C(S)C2C(CC(N1C(NC(C(C)=C1)=O)=O)O2)O"  
WUV  InChI             InChI                 1.03   "InChI=1S/C10H14N2O4S/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(4-17)16-8/h3,6-8,13,17H,2,4H2,1H3,(H,11,14,15)/t6-,7+,8+/m0/s1"  
WUV  InChIKey          InChI                 1.03   CPEAGKYEYPXTSP-XLPZGREQSA-N  
WUV  SMILES_CANONICAL  CACTVS                3.385  "CC1=CN([C@H]2C[C@H](O)[C@@H](CS)O2)C(=O)NC1=O"  
WUV  SMILES            CACTVS                3.385  "CC1=CN([CH]2C[CH](O)[CH](CS)O2)C(=O)NC1=O"  
WUV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CS)O"  
WUV  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CS)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WUV  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-thiothymidine"  
WUV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-methyl-1-[(2~{R},4~{S},5~{S})-4-oxidanyl-5-(sulfanylmethyl)oxolan-2-yl]pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WUV  "Create component"  2020-11-17  RCSB  
WUV  "Initial release"   2020-11-25  RCSB  
##
