data_W9V
# 
_chem_comp.id                                    W9V 
_chem_comp.name                                  "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-{[(5Z)-6-{[2-nitro-4-(2H-1,2,3-triazol-2-yl)phenyl]amino}hex-5-en-1-yl]amino}cyclohexane-1,2,3,4-tetrol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H32 N6 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-10-04 
_chem_comp.pdbx_modified_date                    2022-08-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        480.515 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W9V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7K9T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W9V N1  N1  N 0  1 N N N 25.652 1.400  13.344 4.995   -0.206 -0.814 N1  W9V 1  
W9V N3  N2  N 1  1 N N N 33.945 -2.880 16.359 -5.912  -2.588 -0.088 N3  W9V 2  
W9V C4  C1  C 0  1 N N N 26.377 2.688  11.423 7.321   -0.179 -1.580 C4  W9V 3  
W9V C5  C2  C 0  1 N N S 25.879 2.762  12.865 6.199   -1.030 -0.983 C5  W9V 4  
W9V C6  C3  C 0  1 N N N 26.801 0.535  13.048 3.783   -1.036 -0.823 C6  W9V 5  
W9V C7  C4  C 0  1 N N N 26.686 -0.826 13.758 2.553   -0.144 -0.645 C7  W9V 6  
W9V C8  C5  C 0  1 N N N 27.419 -1.995 13.069 1.290   -1.008 -0.654 C8  W9V 7  
W9V C10 C6  C 0  1 N N N 29.364 -3.636 13.119 -1.202  -0.980 -0.485 C10 W9V 8  
W9V C13 C7  C 0  1 Y N N 34.152 -3.240 14.965 -6.032  -1.113 -0.053 C13 W9V 9  
W9V C15 C8  C 0  1 Y N N 35.834 -3.824 13.337 -7.385  0.859  0.120  C15 W9V 10 
W9V C17 C9  C 0  1 Y N N 39.265 -4.718 13.414 -10.142 2.939  0.444  C17 W9V 11 
W9V C20 C10 C 0  1 N N S 24.629 3.647  13.042 6.640   -1.573 0.378  C20 W9V 12 
W9V C21 C11 C 0  1 N N R 23.428 3.147  12.226 6.949   -0.405 1.317  C21 W9V 13 
W9V C1  C12 C 0  1 N N S 23.772 3.125  10.744 8.071   0.446  0.719  C1  W9V 14 
W9V C11 C13 C 0  1 N N N 30.870 -3.937 13.288 -2.433  -0.088 -0.307 C11 W9V 15 
W9V C12 C14 C 0  1 Y N N 33.151 -3.357 13.986 -4.897  -0.321 -0.168 C12 W9V 16 
W9V C14 C15 C 0  1 Y N N 35.474 -3.472 14.622 -7.273  -0.524 0.088  C14 W9V 17 
W9V C16 C16 C 0  1 Y N N 39.185 -4.068 12.133 -10.736 1.675  0.489  C16 W9V 18 
W9V C18 C17 C 0  1 Y N N 34.855 -3.953 12.363 -6.250  1.651  0.010  C18 W9V 19 
W9V C19 C18 C 0  1 Y N N 33.526 -3.719 12.698 -5.010  1.064  -0.136 C19 W9V 20 
W9V C2  C19 C 0  1 N N S 25.256 2.938  10.387 7.630   0.989  -0.641 C2  W9V 21 
W9V C3  C20 C 0  1 N N N 25.609 2.711  8.913  8.752   1.841  -1.239 C3  W9V 22 
W9V C9  C21 C 0  1 N N N 28.698 -2.436 13.814 0.060   -0.116 -0.476 C9  W9V 23 
W9V N2  N3  N 0  1 N N N 31.709 -3.157 14.205 -3.641  -0.916 -0.316 N2  W9V 24 
W9V N4  N4  N 0  1 Y N N 37.245 -4.053 13.076 -8.646  1.457  0.263  N4  W9V 25 
W9V N5  N5  N 0  1 Y N N 37.910 -3.682 11.997 -9.753  0.811  0.372  N5  W9V 26 
W9V N6  N6  N 0  1 Y N N 38.037 -4.668 13.936 -8.853  2.726  0.304  N6  W9V 27 
W9V O1  O1  O 0  1 N N N 22.857 2.424  9.946  8.360   1.537  1.596  O1  W9V 28 
W9V O2  O2  O 0  1 N N N 26.036 3.991  8.535  9.120   2.862  -0.310 O2  W9V 29 
W9V O3  O3  O 0  1 N N N 24.970 1.566  10.499 6.459   1.791  -0.477 O3  W9V 30 
W9V O4  O4  O 0  1 N N N 33.569 -1.573 16.709 -6.761  -3.255 -0.653 O4  W9V 31 
W9V O5  O5  O -1 1 N N N 34.172 -3.839 17.365 -4.965  -3.135 0.448  O5  W9V 32 
W9V O6  O6  O 0  1 N N N 24.314 3.821  14.405 5.592   -2.369 0.936  O6  W9V 33 
W9V O7  O7  O 0  1 N N N 22.323 3.994  12.377 7.361   -0.913 2.588  O7  W9V 34 
W9V H1  H1  H 0  1 N N N 25.506 1.422  14.333 5.050   0.346  0.029  H1  W9V 35 
W9V H3  H3  H 0  1 N N N 26.800 1.688  11.248 8.214   -0.791 -1.706 H3  W9V 36 
W9V H4  H4  H 0  1 N N N 27.161 3.447  11.283 7.006   0.208  -2.550 H4  W9V 37 
W9V H5  H5  H 0  1 N N N 26.683 3.209  13.468 5.978   -1.862 -1.652 H5  W9V 38 
W9V H6  H6  H 0  1 N N N 26.851 0.368  11.962 3.713   -1.566 -1.772 H6  W9V 39 
W9V H7  H7  H 0  1 N N N 27.721 1.036  13.384 3.830   -1.756 -0.006 H7  W9V 40 
W9V H8  H8  H 0  1 N N N 27.099 -0.716 14.771 2.623   0.387  0.305  H8  W9V 41 
W9V H9  H9  H 0  1 N N N 25.619 -1.086 13.823 2.505   0.577  -1.461 H9  W9V 42 
W9V H10 H10 H 0  1 N N N 26.733 -2.853 13.014 1.220   -1.539 -1.603 H10 W9V 43 
W9V H11 H11 H 0  1 N N N 27.697 -1.682 12.052 1.337   -1.729 0.163  H11 W9V 44 
W9V H12 H12 H 0  1 N N N 29.194 -3.503 12.040 -1.155  -1.701 0.331  H12 W9V 45 
W9V H13 H13 H 0  1 N N N 40.143 -5.158 13.864 -10.641 3.895  0.508  H13 W9V 46 
W9V H14 H14 H 0  1 N N N 24.891 4.633  12.630 7.533   -2.185 0.253  H14 W9V 47 
W9V H15 H15 H 0  1 N N N 23.181 2.125  12.550 6.056   0.206  1.442  H15 W9V 48 
W9V H16 H16 H 0  1 N N N 23.601 4.172  10.455 8.964   -0.166 0.594  H16 W9V 49 
W9V H17 H17 H 0  1 N N N 30.942 -4.984 13.616 -2.362  0.442  0.642  H17 W9V 50 
W9V H18 H18 H 0  1 N N N 36.240 -3.375 15.377 -8.156  -1.140 0.172  H18 W9V 51 
W9V H19 H19 H 0  1 N N N 39.988 -3.921 11.426 -11.788 1.454  0.599  H19 W9V 52 
W9V H20 H20 H 0  1 N N N 35.122 -4.232 11.355 -6.338  2.727  0.035  H20 W9V 53 
W9V H21 H21 H 0  1 N N N 32.766 -3.821 11.938 -4.127  1.680  -0.221 H21 W9V 54 
W9V H22 H22 H 0  1 N N N 24.731 2.391  8.333  9.616   1.209  -1.447 H22 W9V 55 
W9V H23 H23 H 0  1 N N N 26.413 1.968  8.801  8.406   2.299  -2.165 H23 W9V 56 
W9V H24 H24 H 0  1 N N N 29.408 -1.596 13.836 0.130   0.415  0.473  H24 W9V 57 
W9V H25 H25 H 0  1 N N N 28.433 -2.720 14.843 0.013   0.605  -1.293 H25 W9V 58 
W9V H26 H26 H 0  1 N N N 31.500 -2.187 14.079 -3.570  -1.877 -0.424 H26 W9V 59 
W9V H27 H27 H 0  1 N N N 21.973 2.604  10.244 8.646   1.266  2.479  H27 W9V 60 
W9V H28 H28 H 0  1 N N N 26.289 3.983  7.619  9.828   3.442  -0.623 H28 W9V 61 
W9V H29 H29 H 0  1 N N N 24.695 1.371  11.387 6.582   2.552  0.107  H29 W9V 62 
W9V H30 H30 H 0  1 N N N 25.082 4.130  14.871 5.803   -2.746 1.801  H30 W9V 63 
W9V H31 H31 H 0  1 N N N 22.077 4.034  13.294 6.698   -1.463 3.026  H31 W9V 64 
W9V H2  H2  H 0  1 N N N 28.828 -4.532 13.467 -1.273  -1.511 -1.434 H2  W9V 65 
W9V H32 H32 H 0  1 N N N 31.321 -3.833 12.290 -2.480  0.632  -1.124 H32 W9V 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W9V O2  C3  SING N N 1  
W9V C3  C2  SING N N 2  
W9V O1  C1  SING N N 3  
W9V C2  O3  SING N N 4  
W9V C2  C1  SING N N 5  
W9V C2  C4  SING N N 6  
W9V C1  C21 SING N N 7  
W9V C4  C5  SING N N 8  
W9V N5  C16 DOUB Y N 9  
W9V N5  N4  SING Y N 10 
W9V C16 C17 SING Y N 11 
W9V C21 O7  SING N N 12 
W9V C21 C20 SING N N 13 
W9V C18 C19 DOUB Y N 14 
W9V C18 C15 SING Y N 15 
W9V C19 C12 SING Y N 16 
W9V C5  C20 SING N N 17 
W9V C5  N1  SING N N 18 
W9V C20 O6  SING N N 19 
W9V C6  N1  SING N N 20 
W9V C6  C7  SING N N 21 
W9V C8  C7  SING N N 22 
W9V C8  C9  SING N N 23 
W9V N4  C15 SING N N 24 
W9V N4  N6  SING Y N 25 
W9V C10 C11 SING N N 26 
W9V C10 C9  SING N N 27 
W9V C11 N2  SING N N 28 
W9V C15 C14 DOUB Y N 29 
W9V C17 N6  DOUB Y N 30 
W9V C12 N2  SING N N 31 
W9V C12 C13 DOUB Y N 32 
W9V C14 C13 SING Y N 33 
W9V C13 N3  SING N N 34 
W9V N3  O4  DOUB N N 35 
W9V N3  O5  SING N N 36 
W9V N1  H1  SING N N 37 
W9V C4  H3  SING N N 38 
W9V C4  H4  SING N N 39 
W9V C5  H5  SING N N 40 
W9V C6  H6  SING N N 41 
W9V C6  H7  SING N N 42 
W9V C7  H8  SING N N 43 
W9V C7  H9  SING N N 44 
W9V C8  H10 SING N N 45 
W9V C8  H11 SING N N 46 
W9V C10 H12 SING N N 47 
W9V C17 H13 SING N N 48 
W9V C20 H14 SING N N 49 
W9V C21 H15 SING N N 50 
W9V C1  H16 SING N N 51 
W9V C11 H17 SING N N 52 
W9V C14 H18 SING N N 53 
W9V C16 H19 SING N N 54 
W9V C18 H20 SING N N 55 
W9V C19 H21 SING N N 56 
W9V C3  H22 SING N N 57 
W9V C3  H23 SING N N 58 
W9V C9  H24 SING N N 59 
W9V C9  H25 SING N N 60 
W9V N2  H26 SING N N 61 
W9V O1  H27 SING N N 62 
W9V O2  H28 SING N N 63 
W9V O3  H29 SING N N 64 
W9V O6  H30 SING N N 65 
W9V O7  H31 SING N N 66 
W9V C10 H2  SING N N 67 
W9V C11 H32 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W9V SMILES           ACDLabs              12.01 "N(C1CC(C(C(C1O)O)O)(O)CO)CCCCCCNc2c([N+](=O)[O-])cc(cc2)n3nccn3"                                                                                                                                       
W9V InChI            InChI                1.03  "InChI=1S/C21H32N6O7/c28-13-21(32)12-16(18(29)19(30)20(21)31)23-8-4-2-1-3-7-22-15-6-5-14(11-17(15)27(33)34)26-24-9-10-25-26/h5-6,9-11,16,18-20,22-23,28-32H,1-4,7-8,12-13H2/t16-,18-,19+,20-,21-/m0/s1" 
W9V InChIKey         InChI                1.03  BJRWBFFORRYEBK-RQUKQETFSA-N                                                                                                                                                                             
W9V SMILES_CANONICAL CACTVS               3.385 "OC[C@@]1(O)C[C@H](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3nccn3)[C@H](O)[C@@H](O)[C@@H]1O"                                                                                                                     
W9V SMILES           CACTVS               3.385 "OC[C]1(O)C[CH](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3nccn3)[CH](O)[CH](O)[CH]1O"                                                                                                                             
W9V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2nccn2)[N+](=O)[O-])NCCCCCCN[C@H]3C[C@@]([C@H]([C@@H]([C@H]3O)O)O)(CO)O"                                                                                                                    
W9V SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2nccn2)[N+](=O)[O-])NCCCCCCNC3CC(C(C(C3O)O)O)(CO)O"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
W9V "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(2H-1,2,3-triazol-2-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol"           
W9V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-[6-[[2-nitro-4-(1,2,3-triazol-2-yl)phenyl]amino]hexylamino]cyclohexane-1,2,3,4-tetrol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W9V "Create component"   2020-10-04 RCSB 
W9V "Other modification" 2020-10-27 RCSB 
W9V "Initial release"    2021-09-29 RCSB 
W9V "Other modification" 2022-08-05 RCSB 
# 
