data_W5V
#

_chem_comp.id                                   W5V
_chem_comp.name                                 "2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H16 F2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-29
_chem_comp.pdbx_modified_date                   2021-09-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       402.352
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W5V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K87
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W5V  C11  C1   C  0  1  N  N  N  40.839  15.029  16.577  -1.336   1.533  -0.058  C11  W5V   1  
W5V  C12  C2   C  0  1  N  N  N  40.414  15.703  17.840  -2.085   2.663   0.127  C12  W5V   2  
W5V  C14  C3   C  0  1  N  N  N  38.975  15.716  18.238  -3.540   2.509   0.303  C14  W5V   3  
W5V  C17  C4   C  0  1  N  N  N  38.390  14.414  16.147  -3.312   0.218   0.096  C17  W5V   4  
W5V  C19  C5   C  0  1  Y  N  N  37.318  13.748  15.286  -3.945  -1.115   0.074  C19  W5V   5  
W5V  C20  C6   C  0  1  Y  N  N  37.163  12.374  15.329  -4.402  -1.657  -1.132  C20  W5V   6  
W5V  C01  C7   C  0  1  N  N  N  38.330   9.920  11.014   8.745  -0.547   1.463  C01  W5V   7  
W5V  C03  C8   C  0  1  Y  N  N  40.038  11.522  11.259   6.569  -0.641   0.514  C03  W5V   8  
W5V  C04  C9   C  0  1  Y  N  N  40.920  12.172  12.103   5.187  -0.726   0.619  C04  W5V   9  
W5V  C05  C10  C  0  1  Y  N  N  41.443  13.407  11.744   4.422  -0.728  -0.535  C05  W5V  10  
W5V  C06  C11  C  0  1  N  N  N  42.409  14.124  12.684   2.920  -0.819  -0.463  C06  W5V  11  
W5V  C07  C12  C  0  1  N  N  N  42.228  13.593  14.105   2.326   0.589  -0.385  C07  W5V  12  
W5V  C09  C13  C  0  1  N  N  N  42.337  15.053  16.228   0.125   1.624  -0.241  C09  W5V  13  
W5V  C22  C14  C  0  1  Y  N  N  36.188  11.765  14.553  -4.993  -2.906  -1.143  C22  W5V  14  
W5V  C23  C15  C  0  1  Y  N  N  35.369  12.534  13.742  -5.135  -3.619   0.034  C23  W5V  15  
W5V  C24  C16  C  0  1  Y  N  N  35.522  13.911  13.703  -4.686  -3.090   1.231  C24  W5V  16  
W5V  C25  C17  C  0  1  Y  N  N  36.496  14.519  14.478  -4.087  -1.845   1.259  C25  W5V  17  
W5V  C27  C18  C  0  1  Y  N  N  41.051  13.955  10.530   5.071  -0.643  -1.758  C27  W5V  18  
W5V  C28  C19  C  0  1  Y  N  N  40.164  13.240   9.736   6.449  -0.561  -1.788  C28  W5V  19  
W5V  F21  F1   F  0  1  N  N  N  37.973  11.620  16.131  -4.265  -0.962  -2.282  F21  W5V  20  
W5V  F26  F2   F  0  1  N  N  N  36.649  15.878  14.442  -3.649  -1.331   2.429  F26  W5V  21  
W5V  N08  N1   N  0  1  N  N  N  42.951  14.386  15.083   0.866   0.500  -0.316  N08  W5V  22  
W5V  N16  N2   N  0  1  N  N  N  37.977  15.080  17.405  -4.070   1.281   0.277  N16  W5V  23  
W5V  N18  N3   N  0  1  N  N  N  39.825  14.395  15.745  -1.969   0.309  -0.065  N18  W5V  24  
W5V  N29  N4   N  0  1  Y  N  N  39.688  12.066  10.108   7.151  -0.556  -0.671  N29  W5V  25  
W5V  O02  O1   O  0  1  N  N  N  39.528  10.275  11.644   7.329  -0.637   1.638  O02  W5V  26  
W5V  O10  O2   O  0  1  N  N  N  43.054  15.660  16.945   0.661   2.712  -0.323  O10  W5V  27  
W5V  O13  O3   O  0  1  N  N  N  41.368  16.321  18.658  -1.506   3.888   0.147  O13  W5V  28  
W5V  O15  O4   O  0  1  N  N  N  38.639  16.246  19.234  -4.250   3.488   0.472  O15  W5V  29  
W5V  H1   H1   H  0  1  N  N  N  38.004   8.933  11.374   9.093  -1.397   0.875  H1   W5V  30  
W5V  H2   H2   H  0  1  N  N  N  37.558  10.668  11.247   8.988   0.379   0.942  H2   W5V  31  
W5V  H3   H3   H  0  1  N  N  N  38.486   9.880   9.926   9.233  -0.555   2.437  H3   W5V  32  
W5V  H4   H4   H  0  1  N  N  N  41.202  11.719  13.042   4.715  -0.791   1.589  H4   W5V  33  
W5V  H5   H5   H  0  1  N  N  N  43.443  13.943  12.354   2.544  -1.323  -1.354  H5   W5V  34  
W5V  H6   H6   H  0  1  N  N  N  42.202  15.204  12.667   2.632  -1.385   0.423  H6   W5V  35  
W5V  H7   H7   H  0  1  N  N  N  41.157  13.611  14.356   2.703   1.093   0.505  H7   W5V  36  
W5V  H8   H8   H  0  1  N  N  N  42.597  12.558  14.146   2.615   1.154  -1.272  H8   W5V  37  
W5V  H9   H9   H  0  1  N  N  N  36.067  10.692  14.581  -5.346  -3.327  -2.073  H9   W5V  38  
W5V  H10  H10  H  0  1  N  N  N  34.609  12.059  13.139  -5.599  -4.595   0.018  H10  W5V  39  
W5V  H11  H11  H  0  1  N  N  N  34.883  14.509  13.070  -4.801  -3.654   2.145  H11  W5V  40  
W5V  H12  H12  H  0  1  N  N  N  41.427  14.916  10.210   4.504  -0.643  -2.678  H12  W5V  41  
W5V  H13  H13  H  0  1  N  N  N  39.855  13.656   8.788   6.958  -0.490  -2.738  H13  W5V  42  
W5V  H14  H14  H  0  1  N  N  N  43.939  14.482  14.964   0.431  -0.367  -0.325  H14  W5V  43  
W5V  H15  H15  H  0  1  N  N  N  40.095  13.942  14.895  -1.447  -0.498  -0.196  H15  W5V  44  
W5V  H16  H16  H  0  1  N  N  N  42.226  16.246  18.257  -2.128   4.616   0.284  H16  W5V  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W5V  C28  N29  DOUB  Y  N   1  
W5V  C28  C27  SING  Y  N   2  
W5V  N29  C03  SING  Y  N   3  
W5V  C27  C05  DOUB  Y  N   4  
W5V  C01  O02  SING  N  N   5  
W5V  C03  O02  SING  N  N   6  
W5V  C03  C04  DOUB  Y  N   7  
W5V  C05  C04  SING  Y  N   8  
W5V  C05  C06  SING  N  N   9  
W5V  C06  C07  SING  N  N  10  
W5V  C24  C23  DOUB  Y  N  11  
W5V  C24  C25  SING  Y  N  12  
W5V  C23  C22  SING  Y  N  13  
W5V  C07  N08  SING  N  N  14  
W5V  F26  C25  SING  N  N  15  
W5V  C25  C19  DOUB  Y  N  16  
W5V  C22  C20  DOUB  Y  N  17  
W5V  N08  C09  SING  N  N  18  
W5V  C19  C20  SING  Y  N  19  
W5V  C19  C17  SING  N  N  20  
W5V  C20  F21  SING  N  N  21  
W5V  N18  C17  SING  N  N  22  
W5V  N18  C11  SING  N  N  23  
W5V  C17  N16  DOUB  N  N  24  
W5V  C09  C11  SING  N  N  25  
W5V  C09  O10  DOUB  N  N  26  
W5V  C11  C12  DOUB  N  N  27  
W5V  N16  C14  SING  N  N  28  
W5V  C12  C14  SING  N  N  29  
W5V  C12  O13  SING  N  N  30  
W5V  C14  O15  DOUB  N  N  31  
W5V  C01  H1   SING  N  N  32  
W5V  C01  H2   SING  N  N  33  
W5V  C01  H3   SING  N  N  34  
W5V  C04  H4   SING  N  N  35  
W5V  C06  H5   SING  N  N  36  
W5V  C06  H6   SING  N  N  37  
W5V  C07  H7   SING  N  N  38  
W5V  C07  H8   SING  N  N  39  
W5V  C22  H9   SING  N  N  40  
W5V  C23  H10  SING  N  N  41  
W5V  C24  H11  SING  N  N  42  
W5V  C27  H12  SING  N  N  43  
W5V  C28  H13  SING  N  N  44  
W5V  N08  H14  SING  N  N  45  
W5V  N18  H15  SING  N  N  46  
W5V  O13  H16  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W5V  SMILES            ACDLabs               12.01  "C2(=C(C(=O)N=C(c1c(F)cccc1F)N2)O)C(=O)NCCc3cc(OC)ncc3"  
W5V  InChI             InChI                 1.03   "InChI=1S/C19H16F2N4O4/c1-29-13-9-10(5-7-22-13)6-8-23-18(27)15-16(26)19(28)25-17(24-15)14-11(20)3-2-4-12(14)21/h2-5,7,9,26H,6,8H2,1H3,(H,23,27)(H,24,25,28)"  
W5V  InChIKey          InChI                 1.03   PXMDINKIDXMYND-UHFFFAOYSA-N  
W5V  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3c(F)cccc3F)ccn1"  
W5V  SMILES            CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3c(F)cccc3F)ccn1"  
W5V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3c(cccc3F)F)O"  
W5V  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3c(cccc3F)F)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W5V  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide"  
W5V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[2,6-bis(fluoranyl)phenyl]-~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-5-oxidanyl-4-oxidanylidene-1~{H}-pyrimidine-6-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W5V  "Create component"  2020-09-29  RCSB  
W5V  "Initial release"   2021-09-29  RCSB  
##
