data_V9V
#

_chem_comp.id                                   V9V
_chem_comp.name                                 "N-(5-{3-[(1S,7R,8R,9S)-4-amino-2-oxo-7lambda~4~-thia-3,5-diazatetracyclo[4.3.0.0~1,7~.0~7,9~]nona-3,5-dien-8-yl]propyl}thiophene-2-carbonyl)-L-glutamic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 N4 O6 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-21
_chem_comp.pdbx_modified_date                   2021-03-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       464.515
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V9V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       7JG4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V9V  C8   C1   C  0  1  Y  N  N  -25.309  12.680  27.447  ?  ?  ?  C8   V9V   1  
V9V  C6   C2   C  0  1  Y  N  N  -27.120  13.039  28.717  ?  ?  ?  C6   V9V   2  
V9V  N1   N1   N  0  1  N  N  N  -25.595  10.398  26.806  ?  ?  ?  N1   V9V   3  
V9V  C2   C3   C  0  1  N  N  N  -24.433  10.481  26.101  ?  ?  ?  C2   V9V   4  
V9V  N3   N2   N  0  1  N  N  N  -23.700  11.579  26.032  ?  ?  ?  N3   V9V   5  
V9V  C4   C4   C  0  1  N  N  N  -24.065  12.710  26.672  ?  ?  ?  C4   V9V   6  
V9V  C7   C5   C  0  1  Y  N  N  -26.023  13.663  28.250  ?  ?  ?  C7   V9V   7  
V9V  C13  C6   C  0  1  Y  N  N  -25.077  11.186  33.846  ?  ?  ?  C13  V9V   8  
V9V  C14  C7   C  0  1  Y  N  N  -24.049  12.050  33.586  ?  ?  ?  C14  V9V   9  
V9V  C15  C8   C  0  1  Y  N  N  -24.404  13.037  32.699  ?  ?  ?  C15  V9V  10  
V9V  C16  C9   C  0  1  Y  N  N  -25.668  12.970  32.255  ?  ?  ?  C16  V9V  11  
V9V  C17  C10  C  0  1  N  N  N  -25.041  10.025  34.728  ?  ?  ?  C17  V9V  12  
V9V  C20  C11  C  0  1  N  N  S  -26.262   8.077  35.672  ?  ?  ?  C20  V9V  13  
V9V  C21  C12  C  0  1  N  N  N  -27.266   8.356  36.798  ?  ?  ?  C21  V9V  14  
V9V  C22  C13  C  0  1  N  N  N  -28.326   7.258  36.889  ?  ?  ?  C22  V9V  15  
V9V  C23  C14  C  0  1  N  N  N  -29.675   7.891  37.122  ?  ?  ?  C23  V9V  16  
V9V  C26  C15  C  0  1  N  N  N  -26.707   6.902  34.828  ?  ?  ?  C26  V9V  17  
V9V  C29  C16  C  0  1  N  N  N  -28.150  13.693  29.602  ?  ?  ?  C29  V9V  18  
V9V  C30  C17  C  0  1  N  N  N  -27.754  13.493  31.068  ?  ?  ?  C30  V9V  19  
V9V  C31  C18  C  0  1  N  N  N  -26.301  13.922  31.280  ?  ?  ?  C31  V9V  20  
V9V  C9   C19  C  0  1  Y  N  N  -26.061  11.498  27.490  ?  ?  ?  C9   V9V  21  
V9V  N11  N3   N  0  1  N  N  N  -23.998   9.371  25.432  ?  ?  ?  N11  V9V  22  
V9V  N19  N4   N  0  1  N  N  N  -26.163   9.275  34.827  ?  ?  ?  N19  V9V  23  
V9V  O10  O1   O  0  1  N  N  N  -23.386  13.730  26.614  ?  ?  ?  O10  V9V  24  
V9V  O18  O2   O  0  1  N  N  N  -24.019   9.749  35.329  ?  ?  ?  O18  V9V  25  
V9V  O24  O3   O  0  1  N  N  N  -30.666   7.390  36.639  ?  ?  ?  O24  V9V  26  
V9V  O25  O4   O  0  1  N  N  N  -29.772   9.011  37.860  ?  ?  ?  O25  V9V  27  
V9V  O27  O5   O  0  1  N  N  N  -27.666   6.995  34.096  ?  ?  ?  O27  V9V  28  
V9V  O28  O6   O  0  1  N  N  N  -26.036   5.741  34.871  ?  ?  ?  O28  V9V  29  
V9V  S12  S1   S  0  1  Y  N  N  -26.505  11.650  32.941  ?  ?  ?  S12  V9V  30  
V9V  S5   S2   S  0  1  Y  N  N  -27.154  11.738  28.261  ?  ?  ?  S5   V9V  31  
V9V  H2   H2   H  0  1  N  N  N  -25.731  14.686  28.434  ?  ?  ?  H2   V9V  32  
V9V  H3   H3   H  0  1  N  N  N  -23.068  11.966  34.029  ?  ?  ?  H3   V9V  33  
V9V  H4   H4   H  0  1  N  N  N  -23.717  13.808  32.383  ?  ?  ?  H4   V9V  34  
V9V  H5   H5   H  0  1  N  N  N  -25.281   7.852  36.116  ?  ?  ?  H5   V9V  35  
V9V  H6   H6   H  0  1  N  N  N  -26.725   8.410  37.754  ?  ?  ?  H6   V9V  36  
V9V  H7   H7   H  0  1  N  N  N  -27.763   9.318  36.603  ?  ?  ?  H7   V9V  37  
V9V  H8   H8   H  0  1  N  N  N  -28.345   6.686  35.950  ?  ?  ?  H8   V9V  38  
V9V  H9   H9   H  0  1  N  N  N  -28.087   6.583  37.724  ?  ?  ?  H9   V9V  39  
V9V  H10  H10  H  0  1  N  N  N  -28.198  14.769  29.377  ?  ?  ?  H10  V9V  40  
V9V  H11  H11  H  0  1  N  N  N  -29.134  13.236  29.421  ?  ?  ?  H11  V9V  41  
V9V  H12  H12  H  0  1  N  N  N  -28.410  14.100  31.709  ?  ?  ?  H12  V9V  42  
V9V  H13  H13  H  0  1  N  N  N  -27.863  12.431  31.333  ?  ?  ?  H13  V9V  43  
V9V  H14  H14  H  0  1  N  N  N  -26.270  14.945  31.684  ?  ?  ?  H14  V9V  44  
V9V  H15  H15  H  0  1  N  N  N  -25.760  13.889  30.323  ?  ?  ?  H15  V9V  45  
V9V  H16  H16  H  0  1  N  N  N  -24.530   8.525  25.468  ?  ?  ?  H16  V9V  46  
V9V  H17  H17  H  0  1  N  N  N  -23.148   9.405  24.907  ?  ?  ?  H17  V9V  47  
V9V  H18  H18  H  0  1  N  N  N  -26.966   9.550  34.298  ?  ?  ?  H18  V9V  48  
V9V  H19  H19  H  0  1  N  N  N  -30.681   9.282  37.907  ?  ?  ?  H19  V9V  49  
V9V  H20  H20  H  0  1  N  N  N  -26.441   5.119  34.279  ?  ?  ?  H20  V9V  50  
V9V  H1   H1   H  0  1  N  N  N  -22.857  11.572  25.494  ?  ?  ?  H1   V9V  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V9V  C8   C4   SING  N  N   1  
V9V  C8   C7   SING  Y  N   2  
V9V  C8   C9   DOUB  Y  N   3  
V9V  C6   C7   DOUB  Y  N   4  
V9V  C6   C29  SING  N  N   5  
V9V  C6   S5   SING  Y  N   6  
V9V  N1   C2   DOUB  N  N   7  
V9V  N1   C9   SING  N  N   8  
V9V  C2   N3   SING  N  N   9  
V9V  C2   N11  SING  N  N  10  
V9V  N3   C4   SING  N  N  11  
V9V  C4   O10  DOUB  N  N  12  
V9V  C13  C14  DOUB  Y  N  13  
V9V  C13  C17  SING  N  N  14  
V9V  C13  S12  SING  Y  N  15  
V9V  C14  C15  SING  Y  N  16  
V9V  C15  C16  DOUB  Y  N  17  
V9V  C16  C31  SING  N  N  18  
V9V  C16  S12  SING  Y  N  19  
V9V  C17  N19  SING  N  N  20  
V9V  C17  O18  DOUB  N  N  21  
V9V  C20  C21  SING  N  N  22  
V9V  C20  C26  SING  N  N  23  
V9V  C20  N19  SING  N  N  24  
V9V  C21  C22  SING  N  N  25  
V9V  C22  C23  SING  N  N  26  
V9V  C23  O24  DOUB  N  N  27  
V9V  C23  O25  SING  N  N  28  
V9V  C26  O27  DOUB  N  N  29  
V9V  C26  O28  SING  N  N  30  
V9V  C29  C30  SING  N  N  31  
V9V  C30  C31  SING  N  N  32  
V9V  C9   S5   SING  Y  N  33  
V9V  C7   H2   SING  N  N  34  
V9V  C14  H3   SING  N  N  35  
V9V  C15  H4   SING  N  N  36  
V9V  C20  H5   SING  N  N  37  
V9V  C21  H6   SING  N  N  38  
V9V  C21  H7   SING  N  N  39  
V9V  C22  H8   SING  N  N  40  
V9V  C22  H9   SING  N  N  41  
V9V  C29  H10  SING  N  N  42  
V9V  C29  H11  SING  N  N  43  
V9V  C30  H12  SING  N  N  44  
V9V  C30  H13  SING  N  N  45  
V9V  C31  H14  SING  N  N  46  
V9V  C31  H15  SING  N  N  47  
V9V  N11  H16  SING  N  N  48  
V9V  N11  H17  SING  N  N  49  
V9V  N19  H18  SING  N  N  50  
V9V  O25  H19  SING  N  N  51  
V9V  O28  H20  SING  N  N  52  
V9V  N3   H1   SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V9V  SMILES            ACDLabs               12.01  "c21C(NC(=Nc1sc(c2)CCCc3ccc(C(NC(CCC(=O)O)C(=O)O)=O)s3)N)=O"  
V9V  InChI             InChI                 1.03   "InChI=1S/C19H20N4O6S2/c20-19-22-15(26)11-8-10(31-17(11)23-19)3-1-2-9-4-6-13(30-9)16(27)21-12(18(28)29)5-7-14(24)25/h4,6,8,12H,1-3,5,7H2,(H,21,27)(H,24,25)(H,28,29)(H3,20,22,23,26)/t12-/m0/s1"  
V9V  InChIKey          InChI                 1.03   VCNJYHGDMDELAI-LBPRGKRZSA-N  
V9V  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2sc(CCCc3sc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1"  
V9V  SMILES            CACTVS                3.385  "NC1=Nc2sc(CCCc3sc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1"  
V9V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(sc1CCCc2cc3c(s2)N=C(NC3=O)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O"  
V9V  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(sc1CCCc2cc3c(s2)N=C(NC3=O)N)C(=O)NC(CCC(=O)O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V9V  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{5-[3-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)propyl]thiophene-2-carbonyl}-L-glutamic acid"  
V9V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[5-[3-(2-azanyl-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidin-6-yl)propyl]thiophen-2-yl]carbonylamino]pentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V9V  "Create component"      2020-07-21  RCSB  
V9V  "Modify aromatic_flag"  2020-07-21  RCSB  
V9V  "Initial release"       2021-03-31  RCSB  
##
