data_V5V
#

_chem_comp.id                                   V5V
_chem_comp.name                                 "(1R,3R,15E,28R,29R,30R,31R,34R,36R,39S,41R)-29,41-difluoro-34,39-disulfanyl-2,33,35,38,40,42-hexaoxa-4,6,9,11,13,18,20,22,25,27-decaaza-34,39-diphosphaoctacyclo[28.6.4.1~3,36~.1~28,31~.0~4,8~.0~7,12~.0~19,24~.0~23,27~]dotetraconta-5,7,9,11,15,19,21,23,25-nonaene 34,39-dioxide (non-preferred name)"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H26 F2 N10 O8 P2 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-01
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       746.600
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V5V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XF3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V5V  N1   N1   N  0  1  Y  N  N  -14.772  82.011  145.523  -14.772  82.011  145.523  N1   V5V   1  
V5V  N3   N2   N  0  1  Y  N  N  -16.432  84.832  147.334  -16.432  84.832  147.334  N3   V5V   2  
V5V  C4   C1   C  0  1  N  N  N  -14.748  76.976  146.632  -14.748  76.976  146.632  C4   V5V   3  
V5V  C5   C2   C  0  1  Y  N  N  -15.805  82.244  147.501  -15.805  82.244  147.501  C5   V5V   4  
V5V  C6   C3   C  0  1  Y  N  N  -15.431  82.934  146.348  -15.431  82.934  146.348  C6   V5V   5  
V5V  C7   C4   C  0  1  Y  N  N  -14.821  80.894  146.252  -14.821  80.894  146.252  C7   V5V   6  
V5V  C8   C5   C  0  1  Y  N  N  -16.732  84.045  148.386  -16.732  84.045  148.386  C8   V5V   7  
V5V  C10  C6   C  0  1  N  N  R  -16.298  77.368  141.717  -16.298  77.368  141.717  C10  V5V   8  
V5V  C13  C7   C  0  1  N  N  R  -16.464  77.016  143.173  -16.464  77.016  143.173  C13  V5V   9  
V5V  C15  C8   C  0  1  Y  N  N  -17.603  80.159  140.844  -17.603  80.159  140.844  C15  V5V  10  
V5V  C17  C9   C  0  1  Y  N  N  -18.578  79.768  142.632  -18.578  79.768  142.632  C17  V5V  11  
V5V  C20  C10  C  0  1  N  N  N  -18.455  84.103  142.406  -18.455  84.103  142.406  C20  V5V  12  
V5V  C21  C11  C  0  1  N  N  N  -14.909  84.750  143.973  -14.909  84.750  143.973  C21  V5V  13  
V5V  C22  C12  C  0  1  N  N  N  -16.026  84.454  143.015  -16.026  84.454  143.015  C22  V5V  14  
V5V  F1   F1   F  0  1  N  N  N  -17.412  78.803  149.501  -17.412  78.803  149.501  F1   V5V  15  
V5V  C    C13  C  0  1  N  N  R  -17.049  79.352  148.307  -17.049  79.352  148.307  C    V5V  16  
V5V  C3   C14  C  0  1  N  N  R  -16.872  78.253  147.277  -16.872  78.253  147.277  C3   V5V  17  
V5V  O1   O1   O  0  1  N  N  N  -17.924  77.308  147.303  -17.924  77.308  147.303  O1   V5V  18  
V5V  P    P1   P  0  1  N  N  S  -19.243  77.572  146.398  -19.243  77.572  146.398  P    V5V  19  
V5V  O3   O2   O  0  1  N  N  N  -20.320  76.567  146.671  -20.320  76.567  146.671  O3   V5V  20  
V5V  S1   S1   S  0  1  N  N  N  -19.988  79.503  146.534  -19.988  79.503  146.534  S1   V5V  21  
V5V  O6   O3   O  0  1  N  N  N  -18.630  77.381  144.920  -18.630  77.381  144.920  O6   V5V  22  
V5V  C14  C15  C  0  1  N  N  N  -18.380  76.061  144.469  -18.380  76.061  144.469  C14  V5V  23  
V5V  C12  C16  C  0  1  N  N  R  -17.723  76.179  143.104  -17.723  76.179  143.104  C12  V5V  24  
V5V  F    F2   F  0  1  N  N  N  -15.890  76.255  141.045  -15.890  76.255  141.045  F    V5V  25  
V5V  O5   O4   O  0  1  N  N  N  -15.392  76.309  143.763  -15.392  76.309  143.763  O5   V5V  26  
V5V  P1   P2   P  0  1  N  N  R  -14.067  77.161  144.151  -14.067  77.161  144.151  P1   V5V  27  
V5V  O7   O5   O  0  1  N  N  N  -13.771  78.208  143.124  -13.771  78.208  143.124  O7   V5V  28  
V5V  S    S2   S  0  1  N  N  N  -12.456  75.871  144.379  -12.456  75.871  144.379  S    V5V  29  
V5V  O2   O6   O  0  1  N  N  N  -14.543  77.845  145.538  -14.543  77.845  145.538  O2   V5V  30  
V5V  C2   C17  C  0  1  N  N  R  -15.535  77.670  147.735  -15.535  77.670  147.735  C2   V5V  31  
V5V  O    O7   O  0  1  N  N  N  -14.743  78.784  148.202  -14.743  78.784  148.202  O    V5V  32  
V5V  O4   O8   O  0  1  N  N  N  -18.591  76.873  142.189  -18.591  76.873  142.189  O4   V5V  33  
V5V  C11  C18  C  0  1  N  N  R  -17.749  77.706  141.340  -17.749  77.706  141.340  C11  V5V  34  
V5V  N5   N3   N  0  1  Y  N  N  -17.980  79.114  141.595  -17.980  79.114  141.595  N5   V5V  35  
V5V  N6   N4   N  0  1  Y  N  N  -18.624  81.107  142.595  -18.624  81.107  142.595  N6   V5V  36  
V5V  C16  C19  C  0  1  Y  N  N  -17.965  81.389  141.389  -17.965  81.389  141.389  C16  V5V  37  
V5V  C19  C20  C  0  1  Y  N  N  -17.621  82.540  140.661  -17.621  82.540  140.661  C19  V5V  38  
V5V  N8   N5   N  0  1  Y  N  N  -16.956  82.359  139.489  -16.956  82.359  139.489  N8   V5V  39  
V5V  C18  C21  C  0  1  Y  N  N  -16.669  81.107  139.085  -16.669  81.107  139.085  C18  V5V  40  
V5V  N7   N6   N  0  1  Y  N  N  -16.956  79.946  139.696  -16.956  79.946  139.696  N7   V5V  41  
V5V  N9   N7   N  0  1  N  N  N  -17.902  83.821  141.107  -17.902  83.821  141.107  N9   V5V  42  
V5V  C23  C22  C  0  1  N  N  N  -17.330  84.395  143.358  -17.330  84.395  143.358  C23  V5V  43  
V5V  N4   N8   N  0  1  N  N  N  -15.502  85.155  145.227  -15.502  85.155  145.227  N4   V5V  44  
V5V  C9   C23  C  0  1  Y  N  N  -15.764  84.294  146.281  -15.764  84.294  146.281  C9   V5V  45  
V5V  N2   N9   N  0  1  Y  N  N  -16.459  82.743  148.559  -16.459  82.743  148.559  N2   V5V  46  
V5V  N    N10  N  0  1  Y  N  N  -15.425  80.950  147.471  -15.425  80.950  147.471  N    V5V  47  
V5V  C1   C24  C  0  1  N  N  R  -15.637  79.903  148.452  -15.637  79.903  148.452  C1   V5V  48  
V5V  H1   H1   H  0  1  N  N  N  -15.308  76.093  146.291  -15.308  76.093  146.291  H1   V5V  49  
V5V  H2   H2   H  0  1  N  N  N  -13.772  76.660  147.029  -13.772  76.660  147.029  H2   V5V  50  
V5V  H3   H3   H  0  1  N  N  N  -14.394  79.972  145.885  -14.394  79.972  145.885  H3   V5V  51  
V5V  H4   H4   H  0  1  N  N  N  -17.261  84.525  149.196  -17.261  84.525  149.196  H4   V5V  52  
V5V  H5   H5   H  0  1  N  N  N  -15.639  78.239  141.583  -15.639  78.239  141.583  H5   V5V  53  
V5V  H6   H6   H  0  1  N  N  N  -16.676  77.933  143.742  -16.676  77.933  143.742  H6   V5V  54  
V5V  H7   H7   H  0  1  N  N  N  -19.003  79.221  143.461  -19.003  79.221  143.461  H7   V5V  55  
V5V  H8   H8   H  0  1  N  N  N  -19.122  84.976  142.343  -19.122  84.976  142.342  H8   V5V  56  
V5V  H9   H9   H  0  1  N  N  N  -19.024  83.232  142.762  -19.024  83.232  142.762  H9   V5V  57  
V5V  H10  H10  H  0  1  N  N  N  -14.295  83.850  144.122  -14.295  83.850  144.122  H10  V5V  58  
V5V  H11  H11  H  0  1  N  N  N  -14.280  85.561  143.577  -14.280  85.561  143.577  H11  V5V  59  
V5V  H12  H12  H  0  1  N  N  N  -15.769  84.276  141.981  -15.769  84.276  141.981  H12  V5V  60  
V5V  H13  H13  H  0  1  N  N  N  -17.742  80.127  147.947  -17.742  80.127  147.947  H13  V5V  61  
V5V  H14  H14  H  0  1  N  N  N  -16.758  78.696  146.276  -16.758  78.696  146.277  H14  V5V  62  
V5V  H15  H15  H  0  1  N  N  N  -21.236  79.291  146.831  -21.236  79.291  146.831  H15  V5V  63  
V5V  H16  H16  H  0  1  N  N  N  -19.325  75.504  144.387  -19.325  75.504  144.387  H16  V5V  64  
V5V  H17  H17  H  0  1  N  N  N  -17.708  75.543  145.169  -17.708  75.543  145.169  H17  V5V  65  
V5V  H18  H18  H  0  1  N  N  N  -17.480  75.176  142.724  -17.480  75.176  142.724  H18  V5V  66  
V5V  H19  H19  H  0  1  N  N  N  -11.600  76.354  143.528  -11.600  76.354  143.528  H19  V5V  67  
V5V  H20  H20  H  0  1  N  N  N  -15.714  76.959  148.555  -15.714  76.959  148.555  H20  V5V  68  
V5V  H21  H21  H  0  1  N  N  N  -17.917  77.470  140.279  -17.917  77.470  140.279  H21  V5V  69  
V5V  H22  H22  H  0  1  N  N  N  -16.139  81.026  138.148  -16.139  81.026  138.148  H22  V5V  70  
V5V  H23  H23  H  0  1  N  N  N  -17.038  84.322  141.062  -17.038  84.322  141.062  H23  V5V  71  
V5V  H24  H24  H  0  1  N  N  N  -17.583  84.571  144.393  -17.583  84.571  144.393  H24  V5V  72  
V5V  H25  H25  H  0  1  N  N  N  -14.895  85.858  145.598  -14.895  85.858  145.598  H25  V5V  73  
V5V  H26  H26  H  0  1  N  N  N  -15.495  80.292  149.471  -15.495  80.292  149.471  H26  V5V  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V5V  C18  N8   DOUB  Y  N   1  
V5V  C18  N7   SING  Y  N   2  
V5V  N8   C19  SING  Y  N   3  
V5V  N7   C15  DOUB  Y  N   4  
V5V  C19  N9   SING  N  N   5  
V5V  C19  C16  DOUB  Y  N   6  
V5V  C15  C16  SING  Y  N   7  
V5V  C15  N5   SING  Y  N   8  
V5V  F    C10  SING  N  N   9  
V5V  N9   C20  SING  N  N  10  
V5V  C11  N5   SING  N  N  11  
V5V  C11  C10  SING  N  N  12  
V5V  C11  O4   SING  N  N  13  
V5V  C16  N6   SING  Y  N  14  
V5V  N5   C17  SING  Y  N  15  
V5V  C10  C13  SING  N  N  16  
V5V  O4   C12  SING  N  N  17  
V5V  C20  C23  SING  N  N  18  
V5V  N6   C17  DOUB  Y  N  19  
V5V  C22  C23  DOUB  N  E  20  
V5V  C22  C21  SING  N  N  21  
V5V  C12  C13  SING  N  N  22  
V5V  C12  C14  SING  N  N  23  
V5V  O7   P1   DOUB  N  N  24  
V5V  C13  O5   SING  N  N  25  
V5V  O5   P1   SING  N  N  26  
V5V  C21  N4   SING  N  N  27  
V5V  P1   S    SING  N  N  28  
V5V  P1   O2   SING  N  N  29  
V5V  C14  O6   SING  N  N  30  
V5V  O6   P    SING  N  N  31  
V5V  N4   C9   SING  N  N  32  
V5V  N1   C7   DOUB  Y  N  33  
V5V  N1   C6   SING  Y  N  34  
V5V  O2   C4   SING  N  N  35  
V5V  C7   N    SING  Y  N  36  
V5V  C9   C6   DOUB  Y  N  37  
V5V  C9   N3   SING  Y  N  38  
V5V  C6   C5   SING  Y  N  39  
V5V  P    S1   SING  N  N  40  
V5V  P    O3   DOUB  N  N  41  
V5V  P    O1   SING  N  N  42  
V5V  C4   C2   SING  N  N  43  
V5V  C3   O1   SING  N  N  44  
V5V  C3   C2   SING  N  N  45  
V5V  C3   C    SING  N  N  46  
V5V  N3   C8   DOUB  Y  N  47  
V5V  N    C5   SING  Y  N  48  
V5V  N    C1   SING  N  N  49  
V5V  C5   N2   DOUB  Y  N  50  
V5V  C2   O    SING  N  N  51  
V5V  O    C1   SING  N  N  52  
V5V  C    C1   SING  N  N  53  
V5V  C    F1   SING  N  N  54  
V5V  C8   N2   SING  Y  N  55  
V5V  C4   H1   SING  N  N  56  
V5V  C4   H2   SING  N  N  57  
V5V  C7   H3   SING  N  N  58  
V5V  C8   H4   SING  N  N  59  
V5V  C10  H5   SING  N  N  60  
V5V  C13  H6   SING  N  N  61  
V5V  C17  H7   SING  N  N  62  
V5V  C20  H8   SING  N  N  63  
V5V  C20  H9   SING  N  N  64  
V5V  C21  H10  SING  N  N  65  
V5V  C21  H11  SING  N  N  66  
V5V  C22  H12  SING  N  N  67  
V5V  C    H13  SING  N  N  68  
V5V  C3   H14  SING  N  N  69  
V5V  S1   H15  SING  N  N  70  
V5V  C14  H16  SING  N  N  71  
V5V  C14  H17  SING  N  N  72  
V5V  C12  H18  SING  N  N  73  
V5V  S    H19  SING  N  N  74  
V5V  C2   H20  SING  N  N  75  
V5V  C11  H21  SING  N  N  76  
V5V  C18  H22  SING  N  N  77  
V5V  N9   H23  SING  N  N  78  
V5V  C23  H24  SING  N  N  79  
V5V  N4   H25  SING  N  N  80  
V5V  C1   H26  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V5V  SMILES            ACDLabs               12.01  "n1cn5c2ncnc(c12)NCC=CCNc8c3c(n(cn3)C7C(C6OP(S)(OCC4C(C(F)C5O4)OP(S)(=O)OCC6O7)=O)F)ncn8"  
V5V  InChI             InChI                 1.03   "InChI=1S/C24H26F2N10O8P2S2/c25-13-17-11-5-39-46(38,48)44-18-12(6-40-45(37,47)43-17)42-24(14(18)26)36-10-34-16-20(30-8-32-22(16)36)28-4-2-1-3-27-19-15-21(31-7-29-19)35(9-33-15)23(13)41-11/h1-2,7-14,17-18,23-24H,3-6H2,(H,37,47)(H,38,48)(H,27,29,31)(H,28,30,32)/b2-1+/t11-,12-,13-,14-,17-,18-,23-,24-,45-,46+/m1/s1"  
V5V  InChIKey          InChI                 1.03   YQSAUMRQALUWNS-VUCARUFASA-N  
V5V  SMILES_CANONICAL  CACTVS                3.385  "F[C@@H]1[C@@H]2O[P@](S)(=O)OC[C@H]3O[C@@H]4[C@H](F)[C@@H]3O[P@@](S)(=O)OC[C@H]2O[C@H]1n5cnc6c(NC\C=C\CNc7ncnc8n4cnc78)ncnc56"  
V5V  SMILES            CACTVS                3.385  "F[CH]1[CH]2O[P](S)(=O)OC[CH]3O[CH]4[CH](F)[CH]3O[P](S)(=O)OC[CH]2O[CH]1n5cnc6c(NCC=CCNc7ncnc8n4cnc78)ncnc56"  
V5V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c3c(n1)n(cn3)[C@H]4[C@@H]([C@H]5[C@H](O4)CO[P@](=O)(O[C@@H]6[C@@H](CO[P@@](=O)(O5)S)O[C@H]([C@@H]6F)n7cnc8c7ncnc8NC/C=C/CN2)S)F"  
V5V  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c3c(n1)n(cn3)C4C(C5C(O4)COP(=O)(OC6C(COP(=O)(O5)S)OC(C6F)n7cnc8c7ncnc8NCC=CCN2)S)F"  
#
_pdbx_chem_comp_identifier.comp_id          V5V
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(1R,3R,15E,28R,29R,30R,31R,34R,36R,39S,41R)-29,41-difluoro-34,39-disulfanyl-2,33,35,38,40,42-hexaoxa-4,6,9,11,13,18,20,22,25,27-decaaza-34,39-diphosphaoctacyclo[28.6.4.1~3,36~.1~28,31~.0~4,8~.0~7,12~.0~19,24~.0~23,27~]dotetraconta-5,7,9,11,15,19,21,23,25-nonaene 34,39-dioxide (non-preferred name)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V5V  "Create component"  2020-07-01  RCSB  
V5V  "Initial release"   2021-02-17  RCSB  
##
