data_SJV
#

_chem_comp.id                                   SJV
_chem_comp.name                                 "methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H28 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-10
_chem_comp.pdbx_modified_date                   2020-12-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       484.550
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SJV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6W3E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SJV  C4   C1   C  0  1  Y  N  N  17.927  -39.769  20.667   3.515   0.182  -1.964  C4   SJV   1  
SJV  C5   C2   C  0  1  Y  N  N  17.202  -40.959  20.839   3.244  -0.000  -0.598  C5   SJV   2  
SJV  C6   C3   C  0  1  Y  N  N  16.195  -41.298  19.902   1.987   0.395  -0.079  C6   SJV   3  
SJV  C11  C4   C  0  1  Y  N  N  14.573  -42.530  14.757  -1.657   4.368   0.952  C11  SJV   4  
SJV  C7   C5   C  0  1  Y  N  N  15.942  -40.436  18.816   1.031   0.964  -0.946  C7   SJV   5  
SJV  C9   C6   C  0  1  Y  N  N  15.256  -41.361  16.749  -0.311   2.619  -0.013  C9   SJV   6  
SJV  C10  C7   C  0  1  Y  N  N  14.226  -41.909  15.959  -1.544   3.055   0.487  C10  SJV   7  
SJV  C12  C8   C  0  1  Y  N  N  15.906  -42.578  14.390  -0.540   5.185   0.893  C12  SJV   8  
SJV  C13  C9   C  0  1  Y  N  N  16.857  -42.014  15.218   0.642   4.683   0.381  C13  SJV   9  
SJV  C3   C10  C  0  1  Y  N  N  17.655  -38.956  19.608   2.572   0.739  -2.773  C3   SJV  10  
SJV  C1   C11  C  0  1  N  N  N  16.392  -38.358  17.530   0.311   1.733  -3.195  C1   SJV  11  
SJV  C2   C12  C  0  1  Y  N  N  16.664  -39.284  18.687   1.332   1.125  -2.269  C2   SJV  12  
SJV  O8   O1   O  0  1  N  N  N  14.967  -40.744  17.921  -0.181   1.349  -0.469  O8   SJV  13  
SJV  N14  N1   N  0  1  Y  N  N  16.514  -41.432  16.350   0.725   3.440  -0.053  N14  SJV  14  
SJV  C15  C13  C  0  1  Y  N  N  12.793  -41.862  16.354  -2.709   2.141   0.523  C15  SJV  15  
SJV  C16  C14  C  0  1  Y  N  N  12.395  -41.848  17.696  -3.940   2.578   1.023  C16  SJV  16  
SJV  C17  C15  C  0  1  Y  N  N  11.046  -41.809  17.995  -4.999   1.688   1.036  C17  SJV  17  
SJV  N18  N2   N  0  1  Y  N  N  10.167  -41.797  17.007  -4.818   0.459   0.578  N18  SJV  18  
SJV  C19  C16  C  0  1  Y  N  N  10.564  -41.823  15.744  -3.641   0.072   0.110  C19  SJV  19  
SJV  N20  N3   N  0  1  Y  N  N  11.847  -41.857  15.415  -2.602   0.892   0.074  N20  SJV  20  
SJV  N21  N4   N  0  1  N  N  N   9.604  -41.807  14.750  -3.494  -1.223  -0.358  N21  SJV  21  
SJV  C22  C17  C  0  1  N  N  S   9.947  -42.201  13.383  -4.632  -2.144  -0.332  C22  SJV  22  
SJV  C24  C18  C  0  1  N  N  N   8.656  -42.453  12.600  -4.444  -3.220  -1.405  C24  SJV  23  
SJV  C25  C19  C  0  1  N  N  N   9.004  -42.795  11.149  -5.607  -4.213  -1.331  C25  SJV  24  
SJV  C26  C20  C  0  1  N  N  N   9.831  -41.660  10.542  -5.665  -4.820   0.072  C26  SJV  25  
SJV  N27  N5   N  0  1  N  N  N  11.056  -41.468  11.328  -5.847  -3.751   1.062  N27  SJV  26  
SJV  C28  C21  C  0  1  N  N  N  10.743  -41.082  12.709  -4.719  -2.810   1.043  C28  SJV  27  
SJV  C29  C22  C  0  1  Y  N  N  15.466  -42.486  20.068   1.714   0.213   1.286  C29  SJV  28  
SJV  C30  C23  C  0  1  Y  N  N  15.732  -43.301  21.125   2.655  -0.340   2.100  C30  SJV  29  
SJV  C31  C24  C  0  1  Y  N  N  16.717  -42.974  22.054   3.894  -0.732   1.602  C31  SJV  30  
SJV  C32  C25  C  0  1  Y  N  N  17.464  -41.821  21.925   4.201  -0.570   0.269  C32  SJV  31  
SJV  N33  N6   N  0  1  N  N  N  18.453  -41.467  22.854   5.447  -0.967  -0.221  N33  SJV  32  
SJV  C34  C26  C  0  1  N  N  N  19.245  -42.336  23.524   6.149  -1.924   0.417  C34  SJV  33  
SJV  O35  O2   O  0  1  N  N  N  19.172  -43.538  23.358   5.655  -2.514   1.358  O35  SJV  34  
SJV  O36  O3   O  0  1  N  N  N  20.150  -41.849  24.394   7.397  -2.227   0.013  O36  SJV  35  
SJV  C37  C27  C  0  1  N  N  N  20.794  -42.801  25.280   8.093  -3.269   0.747  C37  SJV  36  
SJV  H1   H1   H  0  1  N  N  N  18.699  -39.499  21.373   4.470  -0.116  -2.371  H1   SJV  37  
SJV  H2   H2   H  0  1  N  N  N  13.813  -42.965  14.125  -2.593   4.737   1.344  H2   SJV  38  
SJV  H3   H3   H  0  1  N  N  N  16.200  -43.052  13.465  -0.592   6.205   1.244  H3   SJV  39  
SJV  H4   H4   H  0  1  N  N  N  17.898  -42.050  14.933   1.513   5.320   0.335  H4   SJV  40  
SJV  H5   H5   H  0  1  N  N  N  18.217  -38.043  19.481   2.785   0.876  -3.822  H5   SJV  41  
SJV  H6   H6   H  0  1  N  N  N  15.624  -37.625  17.819   0.441   2.815  -3.219  H6   SJV  42  
SJV  H7   H7   H  0  1  N  N  N  17.318  -37.830  17.257   0.444   1.329  -4.199  H7   SJV  43  
SJV  H8   H8   H  0  1  N  N  N  16.036  -38.942  16.669  -0.691   1.495  -2.838  H8   SJV  44  
SJV  H9   H9   H  0  1  N  N  N  13.131  -41.867  18.486  -4.060   3.586   1.390  H9   SJV  45  
SJV  H10  H10  H  0  1  N  N  N  10.714  -41.789  19.023  -5.963   1.993   1.415  H10  SJV  46  
SJV  H11  H11  H  0  1  N  N  N   9.258  -40.870  14.700  -2.638  -1.519  -0.704  H11  SJV  47  
SJV  H23  H12  H  0  1  N  N  N  10.551  -43.121  13.393  -5.552  -1.593  -0.528  H23  SJV  48  
SJV  H12  H13  H  0  1  N  N  N   8.029  -41.550  12.625  -4.425  -2.754  -2.390  H12  SJV  49  
SJV  H13  H14  H  0  1  N  N  N   8.108  -43.292  13.054  -3.504  -3.745  -1.233  H13  SJV  50  
SJV  H14  H15  H  0  1  N  N  N   8.077  -42.924  10.570  -6.542  -3.695  -1.542  H14  SJV  51  
SJV  H15  H16  H  0  1  N  N  N   9.586  -43.728  11.122  -5.457  -5.005  -2.065  H15  SJV  52  
SJV  H16  H17  H  0  1  N  N  N  10.097  -41.915   9.506  -6.501  -5.517   0.133  H16  SJV  53  
SJV  H17  H18  H  0  1  N  N  N   9.241  -40.732  10.551  -4.735  -5.350   0.278  H17  SJV  54  
SJV  H18  H19  H  0  1  N  N  N  11.575  -42.323  11.337  -6.721  -3.269   0.917  H18  SJV  55  
SJV  H20  H21  H  0  1  N  N  N  11.678  -40.912  13.263  -3.793  -3.349   1.243  H20  SJV  56  
SJV  H21  H22  H  0  1  N  N  N  10.146  -40.158  12.705  -4.869  -2.048   1.808  H21  SJV  57  
SJV  H22  H23  H  0  1  N  N  N  14.696  -42.753  19.359   0.758   0.512   1.690  H22  SJV  58  
SJV  H24  H24  H  0  1  N  N  N  15.171  -44.216  21.245   2.437  -0.476   3.149  H24  SJV  59  
SJV  H25  H25  H  0  1  N  N  N  16.899  -43.634  22.889   4.624  -1.167   2.269  H25  SJV  60  
SJV  H26  H26  H  0  1  N  N  N  18.584  -40.492  23.036   5.808  -0.553  -1.021  H26  SJV  61  
SJV  H27  H27  H  0  1  N  N  N  21.504  -42.273  25.933   9.085  -3.414   0.320  H27  SJV  62  
SJV  H28  H28  H  0  1  N  N  N  20.032  -43.302  25.896   8.187  -2.976   1.793  H28  SJV  63  
SJV  H29  H29  H  0  1  N  N  N  21.333  -43.551  24.683   7.529  -4.199   0.680  H29  SJV  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SJV  C26  C25  SING  N  N   1  
SJV  C26  N27  SING  N  N   2  
SJV  C25  C24  SING  N  N   3  
SJV  N27  C28  SING  N  N   4  
SJV  C24  C22  SING  N  N   5  
SJV  C28  C22  SING  N  N   6  
SJV  C22  N21  SING  N  N   7  
SJV  C12  C11  DOUB  Y  N   8  
SJV  C12  C13  SING  Y  N   9  
SJV  N21  C19  SING  N  N  10  
SJV  C11  C10  SING  Y  N  11  
SJV  C13  N14  DOUB  Y  N  12  
SJV  N20  C19  DOUB  Y  N  13  
SJV  N20  C15  SING  Y  N  14  
SJV  C19  N18  SING  Y  N  15  
SJV  C10  C15  SING  N  N  16  
SJV  C10  C9   DOUB  Y  N  17  
SJV  N14  C9   SING  Y  N  18  
SJV  C15  C16  DOUB  Y  N  19  
SJV  C9   O8   SING  N  N  20  
SJV  N18  C17  DOUB  Y  N  21  
SJV  C1   C2   SING  N  N  22  
SJV  C16  C17  SING  Y  N  23  
SJV  O8   C7   SING  N  N  24  
SJV  C2   C7   DOUB  Y  N  25  
SJV  C2   C3   SING  Y  N  26  
SJV  C7   C6   SING  Y  N  27  
SJV  C3   C4   DOUB  Y  N  28  
SJV  C6   C29  DOUB  Y  N  29  
SJV  C6   C5   SING  Y  N  30  
SJV  C29  C30  SING  Y  N  31  
SJV  C4   C5   SING  Y  N  32  
SJV  C5   C32  DOUB  Y  N  33  
SJV  C30  C31  DOUB  Y  N  34  
SJV  C32  C31  SING  Y  N  35  
SJV  C32  N33  SING  N  N  36  
SJV  N33  C34  SING  N  N  37  
SJV  O35  C34  DOUB  N  N  38  
SJV  C34  O36  SING  N  N  39  
SJV  O36  C37  SING  N  N  40  
SJV  C4   H1   SING  N  N  41  
SJV  C11  H2   SING  N  N  42  
SJV  C12  H3   SING  N  N  43  
SJV  C13  H4   SING  N  N  44  
SJV  C3   H5   SING  N  N  45  
SJV  C1   H6   SING  N  N  46  
SJV  C1   H7   SING  N  N  47  
SJV  C1   H8   SING  N  N  48  
SJV  C16  H9   SING  N  N  49  
SJV  C17  H10  SING  N  N  50  
SJV  N21  H11  SING  N  N  51  
SJV  C22  H23  SING  N  N  52  
SJV  C24  H12  SING  N  N  53  
SJV  C24  H13  SING  N  N  54  
SJV  C25  H14  SING  N  N  55  
SJV  C25  H15  SING  N  N  56  
SJV  C26  H16  SING  N  N  57  
SJV  C26  H17  SING  N  N  58  
SJV  N27  H18  SING  N  N  59  
SJV  C28  H20  SING  N  N  60  
SJV  C28  H21  SING  N  N  61  
SJV  C29  H22  SING  N  N  62  
SJV  C30  H24  SING  N  N  63  
SJV  C31  H25  SING  N  N  64  
SJV  N33  H26  SING  N  N  65  
SJV  C37  H27  SING  N  N  66  
SJV  C37  H28  SING  N  N  67  
SJV  C37  H29  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SJV  InChI             InChI                 1.03   "InChI=1S/C27H28N6O3/c1-17-10-11-19-20(7-3-9-22(19)33-27(34)35-2)24(17)36-25-21(8-5-14-29-25)23-12-15-30-26(32-23)31-18-6-4-13-28-16-18/h3,5,7-12,14-15,18,28H,4,6,13,16H2,1-2H3,(H,33,34)(H,30,31,32)/t18-/m0/s1"  
SJV  InChIKey          InChI                 1.03   FMMZPTONJKUBJE-SFHVURJKSA-N  
SJV  SMILES_CANONICAL  CACTVS                3.385  "COC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[C@H]5CCCNC5)n4)c(C)ccc12"  
SJV  SMILES            CACTVS                3.385  "COC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[CH]5CCCNC5)n4)c(C)ccc12"  
SJV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccc2c(c1Oc3c(cccn3)c4ccnc(n4)N[C@H]5CCCNC5)cccc2NC(=O)OC"  
SJV  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccc2c(c1Oc3c(cccn3)c4ccnc(n4)NC5CCCNC5)cccc2NC(=O)OC"  
#
_pdbx_chem_comp_identifier.comp_id          SJV
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SJV  "Create component"  2020-03-10  RCSB  
SJV  "Initial release"   2020-12-09  RCSB  
##
