data_RTV
# 
_chem_comp.id                                    RTV 
_chem_comp.name                                  "2-(acetylamino)-1,5-anhydro-2-deoxy-D-mannitol" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C8 H15 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-02-25 
_chem_comp.pdbx_modified_date                    2023-09-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        205.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RTV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2VLC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RTV O4  O4  O 0 1 N N N -4.173 -0.428 36.341 2.136  -1.980 -0.527 O4  RTV 1  
RTV C4  C4  C 0 1 N N S -4.357 -1.135 35.065 1.149  -0.963 -0.342 C4  RTV 2  
RTV C3  C3  C 0 1 N N R -4.726 -2.641 35.194 0.075  -1.464 0.630  C3  RTV 3  
RTV O3  O3  O 0 1 N N N -4.000 -3.332 34.177 -0.596 -2.590 0.062  O3  RTV 4  
RTV C2  C2  C 0 1 N N R -6.188 -3.067 34.995 -0.934 -0.339 0.881  C2  RTV 5  
RTV N2  N2  N 0 1 N N N -6.412 -3.854 33.774 -1.609 0.002  -0.374 N2  RTV 6  
RTV C7  C7  C 0 1 N N N -6.571 -5.192 33.673 -2.835 0.561  -0.349 C7  RTV 7  
RTV O7  O7  O 0 1 N N N -7.439 -5.831 34.238 -3.380 0.781  0.712  O7  RTV 8  
RTV C8  C8  C 0 1 N N N -5.614 -5.918 32.778 -3.529 0.913  -1.640 C8  RTV 9  
RTV C5  C5  C 0 1 N N R -5.287 -0.429 34.047 1.808  0.290  0.240  C5  RTV 10 
RTV C6  C6  C 0 1 N N N -4.630 -0.395 32.664 2.840  0.831  -0.752 C6  RTV 11 
RTV O6  O6  O 0 1 N N N -5.375 0.467  31.790 3.537  1.930  -0.162 O6  RTV 12 
RTV O5  O5  O 0 1 N N N -6.566 -1.044 33.832 0.810  1.285  0.479  O5  RTV 13 
RTV C1  C1  C 0 1 N N N -7.046 -1.822 34.921 -0.195 0.890  1.415  C1  RTV 14 
RTV H4  H4  H 0 1 N N N -3.368 -1.133 34.584 0.689  -0.723 -1.300 H4  RTV 15 
RTV H3  H3  H 0 1 N N N -4.398 -2.988 36.185 0.541  -1.752 1.572  H3  RTV 16 
RTV HO3 HO3 H 0 1 N N N -4.198 -4.260 34.221 -0.014 -3.339 -0.130 HO3 RTV 17 
RTV H2  H2  H 0 1 N N N -6.499 -3.658 35.869 -1.672 -0.669 1.613  H2  RTV 18 
RTV HN2 HN2 H 0 1 N N N -6.451 -3.339 32.918 -1.173 -0.173 -1.222 HN2 RTV 19 
RTV H82 H82 H 0 1 N N N -5.861 -6.990 32.769 -3.662 0.011  -2.238 H82 RTV 20 
RTV H83 H83 H 0 1 N N N -5.690 -5.516 31.757 -4.503 1.351  -1.421 H83 RTV 21 
RTV H81 H81 H 0 1 N N N -4.588 -5.781 33.150 -2.924 1.630  -2.194 H81 RTV 22 
RTV H5  H5  H 0 1 N N N -5.432 0.608  34.383 2.302  0.038  1.178  H5  RTV 23 
RTV H61 H61 H 0 1 N N N -3.601 -0.018 32.758 3.550  0.043  -1.002 H61 RTV 24 
RTV H62 H62 H 0 1 N N N -4.611 -1.412 32.244 2.334  1.165  -1.657 H62 RTV 25 
RTV HO6 HO6 H 0 1 N N N -4.963 0.484  30.934 4.208  2.323  -0.736 HO6 RTV 26 
RTV H11 H11 H 0 1 N N N -8.097 -2.098 34.752 -0.902 1.707  1.556  H11 RTV 27 
RTV H12 H12 H 0 1 N N N -6.963 -1.251 35.857 0.273  0.646  2.369  H12 RTV 28 
RTV HO4 HO4 H 0 1 N Y N -3.951 0.480  36.171 2.848  -1.730 -1.132 HO4 RTV 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RTV O4 C4  SING N N 1  
RTV C4 C3  SING N N 2  
RTV C4 C5  SING N N 3  
RTV C3 C2  SING N N 4  
RTV C3 O3  SING N N 5  
RTV C2 N2  SING N N 6  
RTV C2 C1  SING N N 7  
RTV N2 C7  SING N N 8  
RTV C7 C8  SING N N 9  
RTV C7 O7  DOUB N N 10 
RTV C5 C6  SING N N 11 
RTV C5 O5  SING N N 12 
RTV C6 O6  SING N N 13 
RTV O5 C1  SING N N 14 
RTV C4 H4  SING N N 15 
RTV C3 H3  SING N N 16 
RTV O3 HO3 SING N N 17 
RTV C2 H2  SING N N 18 
RTV N2 HN2 SING N N 19 
RTV C8 H82 SING N N 20 
RTV C8 H83 SING N N 21 
RTV C8 H81 SING N N 22 
RTV C5 H5  SING N N 23 
RTV C6 H61 SING N N 24 
RTV C6 H62 SING N N 25 
RTV O6 HO6 SING N N 26 
RTV C1 H11 SING N N 27 
RTV C1 H12 SING N N 28 
RTV O4 HO4 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RTV SMILES           ACDLabs              12.01 "OC1C(C(NC(C)=O)COC1CO)O"                                                                                    
RTV InChI            InChI                1.03  "InChI=1S/C8H15NO5/c1-4(11)9-5-3-14-6(2-10)8(13)7(5)12/h5-8,10,12-13H,2-3H2,1H3,(H,9,11)/t5-,6-,7-,8-/m1/s1" 
RTV InChIKey         InChI                1.03  VCYYRDKGHLOTQU-WCTZXXKLSA-N                                                                                  
RTV SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1CO[C@H](CO)[C@@H](O)[C@@H]1O"                                                                 
RTV SMILES           CACTVS               3.385 "CC(=O)N[CH]1CO[CH](CO)[CH](O)[CH]1O"                                                                        
RTV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1CO[C@@H]([C@H]([C@@H]1O)O)CO"                                                                 
RTV SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1COC(C(C1O)O)CO"                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RTV "SYSTEMATIC NAME" ACDLabs              12.01 "2-(acetylamino)-1,5-anhydro-2-deoxy-D-mannitol"                                          
RTV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
RTV "CARBOHYDRATE ISOMER"                 D        PDB ? 
RTV "CARBOHYDRATE RING"                   pyranose PDB ? 
RTV "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RTV "Create component"   2020-02-25 RCSB 
RTV "Initial release"    2020-07-29 RCSB 
RTV "Other modification" 2021-02-23 RCSB 
RTV "Obsolete component" 2023-09-20 PDBE 
# 
