data_QVV
#

_chem_comp.id                                   QVV
_chem_comp.name                                 "benzyl [2-(4-{[2-(6-amino-9H-purin-9-yl)ethyl]carbamoyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H25 N9 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SJ000988248
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-02
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       507.502
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QVV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VBR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QVV  C17  C1   C  0  1  N  N  N  14.576  37.065  -15.023    3.014   1.774   2.512  C17  QVV   1  
QVV  C16  C2   C  0  1  N  N  N  12.631  37.417  -16.574    1.597  -0.169   1.834  C16  QVV   2  
QVV  C15  C3   C  0  1  N  N  N  13.574  38.076  -15.572    2.451   0.993   1.323  C15  QVV   3  
QVV  C22  C4   C  0  1  Y  N  N  12.860  41.223  -11.782   -6.681  -2.795  -1.894  C22  QVV   4  
QVV  C19  C5   C  0  1  Y  N  N  11.907  42.986  -12.725   -6.218  -1.526  -0.035  C19  QVV   5  
QVV  C20  C6   C  0  1  Y  N  N  10.642  42.569  -12.229   -7.580  -1.554   0.310  C20  QVV   6  
QVV  C21  C7   C  0  1  Y  N  N  10.606  41.425  -11.500   -8.462  -2.256  -0.528  C21  QVV   7  
QVV  C01  C8   C  0  1  N  N  N  15.926  39.718  -18.023    1.462   3.785  -0.920  C01  QVV   8  
QVV  C02  C9   C  0  1  N  N  N  15.835  41.117  -17.595    0.021   3.527  -1.033  C02  QVV   9  
QVV  C03  C10  C  0  1  N  N  N  14.997  41.457  -16.512   -0.496   2.440  -0.348  C03  QVV  10  
QVV  C04  C11  C  0  1  N  N  N  14.867  42.897  -16.034   -1.941   2.128  -0.423  C04  QVV  11  
QVV  C05  C12  C  0  1  N  N  N  13.896  44.561  -14.484   -3.867   0.760   0.172  C05  QVV  12  
QVV  C06  C13  C  0  1  N  N  N  12.486  45.021  -14.121   -4.166  -0.482   1.015  C06  QVV  13  
QVV  C07  C14  C  0  1  N  N  N  14.366  39.157  -16.286    1.602   1.908   0.479  C07  QVV  14  
QVV  C18  C15  C  0  1  Y  N  N  10.307  44.429  -13.349   -6.552  -0.399   1.830  C18  QVV  15  
QVV  N01  N1   N  0  1  N  N  N  15.200  38.771  -17.369    2.197   2.947  -0.156  N01  QVV  16  
QVV  N02  N2   N  0  1  N  N  N  13.988  43.190  -14.934   -2.437   1.068   0.246  N02  QVV  17  
QVV  N03  N3   N  0  1  N  N  N  14.255  40.461  -15.857    0.327   1.669   0.386  N03  QVV  18  
QVV  N04  N4   N  0  1  N  N  N  12.823  38.657  -14.473    3.556   0.469   0.516  N04  QVV  19  
QVV  N05  N5   N  0  1  Y  N  N  11.604  44.119  -13.393   -5.596  -0.790   0.942  N05  QVV  20  
QVV  N06  N6   N  0  1  Y  N  N   9.610  43.518  -12.643   -7.716  -0.848   1.458  N06  QVV  21  
QVV  N07  N7   N  0  1  Y  N  N  13.047  42.340  -12.518   -5.818  -2.154  -1.136  N07  QVV  22  
QVV  N08  N8   N  0  1  N  N  N   9.340  40.947  -10.968   -9.814  -2.319  -0.240  N08  QVV  23  
QVV  N09  N9   N  0  1  Y  N  N  11.708  40.747  -11.270   -7.970  -2.850  -1.611  N09  QVV  24  
QVV  O01  O1   O  0  1  N  N  N  16.755  39.344  -19.081    1.980   4.722  -1.502  O01  QVV  25  
QVV  O02  O2   O  0  1  N  N  N  16.574  42.102  -18.256   -0.778   4.327  -1.783  O02  QVV  26  
QVV  O03  O3   O  0  1  N  N  N  15.461  43.779  -16.548   -2.680   2.827  -1.087  O03  QVV  27  
QVV  H1   H1   H  0  1  N  N  N  15.244  37.563  -14.304    3.628   1.112   3.123  H1   QVV  28  
QVV  H2   H2   H  0  1  N  N  N  14.036  36.251  -14.518    3.623   2.602   2.148  H2   QVV  29  
QVV  H3   H3   H  0  1  N  N  N  15.171  36.652  -15.851    2.192   2.164   3.113  H3   QVV  30  
QVV  H4   H4   H  0  1  N  N  N  12.050  36.631  -16.069    0.775   0.222   2.434  H4   QVV  31  
QVV  H5   H5   H  0  1  N  N  N  11.945  38.173  -16.984    1.196  -0.725   0.987  H5   QVV  32  
QVV  H6   H6   H  0  1  N  N  N  13.217  36.972  -17.391    2.211  -0.830   2.445  H6   QVV  33  
QVV  H7   H7   H  0  1  N  N  N  13.745  40.638  -11.578   -6.323  -3.291  -2.784  H7   QVV  34  
QVV  H8   H8   H  0  1  N  N  N  14.532  44.673  -13.594   -4.145   0.570  -0.864  H8   QVV  35  
QVV  H9   H9   H  0  1  N  N  N  14.272  45.211  -15.288   -4.442   1.604   0.554  H9   QVV  36  
QVV  H10  H10  H  0  1  N  N  N  12.593  45.928  -13.508   -3.592  -1.326   0.634  H10  QVV  37  
QVV  H11  H11  H  0  1  N  N  N  11.979  45.273  -15.064   -3.888  -0.292   2.052  H11  QVV  38  
QVV  H12  H12  H  0  1  N  N  N   9.872  45.299  -13.819   -6.372   0.196   2.714  H12  QVV  39  
QVV  H13  H13  H  0  1  N  N  N  15.253  37.812  -17.648    3.151   3.090  -0.061  H13  QVV  40  
QVV  H14  H14  H  0  1  N  N  N  13.456  42.467  -14.493   -1.847   0.510   0.777  H14  QVV  41  
QVV  H15  H15  H  0  1  N  N  N  12.663  39.596  -14.167    3.643   0.730  -0.414  H15  QVV  42  
QVV  H18  H18  H  0  1  N  N  N   9.491  40.100  -10.459  -10.163  -1.875   0.549  H18  QVV  43  
QVV  H19  H19  H  0  1  N  N  N   8.953  41.638  -10.358  -10.413  -2.807  -0.826  H19  QVV  44  
QVV  H20  H20  H  0  1  N  N  N  16.401  42.948  -17.859   -0.311   5.055  -2.216  H20  QVV  45  
QVV  C1   C16  C  0  1  N  N  N       ?       ?        ?    4.450  -0.376   1.066  C1   QVV  46  
QVV  O1   O4   O  0  1  N  N  N       ?       ?        ?    5.465  -0.858   0.324  O1   QVV  47  
QVV  C3   C17  C  0  1  N  N  N       ?       ?        ?    6.391  -1.763   0.983  C3   QVV  48  
QVV  C4   C18  C  0  1  Y  N  N       ?       ?        ?    7.452  -2.195   0.004  C4   QVV  49  
QVV  O2   O5   O  0  1  N  N  N       ?       ?        ?    4.340  -0.703   2.231  O2   QVV  50  
QVV  C2   C19  C  0  1  Y  N  N       ?       ?        ?    8.618  -1.463  -0.120  C2   QVV  51  
QVV  C5   C20  C  0  1  Y  N  N       ?       ?        ?    9.591  -1.859  -1.018  C5   QVV  52  
QVV  C6   C21  C  0  1  Y  N  N       ?       ?        ?    9.399  -2.989  -1.792  C6   QVV  53  
QVV  C7   C22  C  0  1  Y  N  N       ?       ?        ?    8.233  -3.721  -1.667  C7   QVV  54  
QVV  C8   C23  C  0  1  Y  N  N       ?       ?        ?    7.262  -3.327  -0.766  C8   QVV  55  
QVV  H16  H16  H  0  1  N  N  N       ?       ?        ?    6.859  -1.254   1.825  H16  QVV  56  
QVV  H17  H17  H  0  1  N  N  N       ?       ?        ?    5.849  -2.638   1.342  H17  QVV  57  
QVV  H21  H21  H  0  1  N  N  N       ?       ?        ?    8.768  -0.580   0.484  H21  QVV  58  
QVV  H22  H22  H  0  1  N  N  N       ?       ?        ?   10.502  -1.287  -1.115  H22  QVV  59  
QVV  H23  H23  H  0  1  N  N  N       ?       ?        ?   10.159  -3.298  -2.494  H23  QVV  60  
QVV  H24  H24  H  0  1  N  N  N       ?       ?        ?    8.083  -4.604  -2.272  H24  QVV  61  
QVV  H25  H25  H  0  1  N  N  N       ?       ?        ?    6.351  -3.900  -0.669  H25  QVV  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QVV  O01  C01  DOUB  N  N   1  
QVV  O02  C02  SING  N  N   2  
QVV  C01  C02  SING  N  N   3  
QVV  C01  N01  SING  N  N   4  
QVV  C02  C03  DOUB  N  N   5  
QVV  N01  C07  SING  N  N   6  
QVV  C16  C15  SING  N  N   7  
QVV  O03  C04  DOUB  N  N   8  
QVV  C03  C04  SING  N  N   9  
QVV  C03  N03  SING  N  N  10  
QVV  C07  N03  DOUB  N  N  11  
QVV  C07  C15  SING  N  N  12  
QVV  C04  N02  SING  N  N  13  
QVV  C15  C17  SING  N  N  14  
QVV  C15  N04  SING  N  N  15  
QVV  N02  C05  SING  N  N  16  
QVV  C05  C06  SING  N  N  17  
QVV  C06  N05  SING  N  N  18  
QVV  N05  C18  SING  Y  N  19  
QVV  N05  C19  SING  Y  N  20  
QVV  C18  N06  DOUB  Y  N  21  
QVV  C19  N07  DOUB  Y  N  22  
QVV  C19  C20  SING  Y  N  23  
QVV  N06  C20  SING  Y  N  24  
QVV  N07  C22  SING  Y  N  25  
QVV  C20  C21  DOUB  Y  N  26  
QVV  C22  N09  DOUB  Y  N  27  
QVV  C21  N09  SING  Y  N  28  
QVV  C21  N08  SING  N  N  29  
QVV  C17  H1   SING  N  N  30  
QVV  C17  H2   SING  N  N  31  
QVV  C17  H3   SING  N  N  32  
QVV  C16  H4   SING  N  N  33  
QVV  C16  H5   SING  N  N  34  
QVV  C16  H6   SING  N  N  35  
QVV  C22  H7   SING  N  N  36  
QVV  C05  H8   SING  N  N  37  
QVV  C05  H9   SING  N  N  38  
QVV  C06  H10  SING  N  N  39  
QVV  C06  H11  SING  N  N  40  
QVV  C18  H12  SING  N  N  41  
QVV  N01  H13  SING  N  N  42  
QVV  N02  H14  SING  N  N  43  
QVV  N04  H15  SING  N  N  44  
QVV  N08  H18  SING  N  N  45  
QVV  N08  H19  SING  N  N  46  
QVV  O02  H20  SING  N  N  47  
QVV  N04  C1   SING  N  N  48  
QVV  C1   O1   SING  N  N  49  
QVV  O1   C3   SING  N  N  50  
QVV  C3   C4   SING  N  N  51  
QVV  C1   O2   DOUB  N  N  52  
QVV  C4   C2   SING  Y  N  53  
QVV  C2   C5   DOUB  Y  N  54  
QVV  C5   C6   SING  Y  N  55  
QVV  C6   C7   DOUB  Y  N  56  
QVV  C7   C8   SING  Y  N  57  
QVV  C8   C4   DOUB  Y  N  58  
QVV  C3   H16  SING  N  N  59  
QVV  C3   H17  SING  N  N  60  
QVV  C2   H21  SING  N  N  61  
QVV  C5   H22  SING  N  N  62  
QVV  C6   H23  SING  N  N  63  
QVV  C7   H24  SING  N  N  64  
QVV  C8   H25  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QVV  SMILES            ACDLabs               12.01  "CC(C)(NC(OCc1ccccc1)=O)C2=NC(=C(C(N2)=O)O)C(NCCn4c3ncnc(c3nc4)N)=O"  
QVV  InChI             InChI                 1.03   "InChI=1S/C23H25N9O5/c1-23(2,31-22(36)37-10-13-6-4-3-5-7-13)21-29-14(16(33)20(35)30-21)19(34)25-8-9-32-12-28-15-17(24)26-11-27-18(15)32/h3-7,11-12,33H,8-10H2,1-2H3,(H,25,34)(H,31,36)(H2,24,26,27)(H,29,30,35)"  
QVV  InChIKey          InChI                 1.03   MEMCKKGWXCKHJK-UHFFFAOYSA-N  
QVV  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCn3cnc4c(N)ncnc34"  
QVV  SMILES            CACTVS                3.385  "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCn3cnc4c(N)ncnc34"  
QVV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCn2cnc3c2ncnc3N)NC(=O)OCc4ccccc4"  
QVV  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCn2cnc3c2ncnc3N)NC(=O)OCc4ccccc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QVV  "SYSTEMATIC NAME"  ACDLabs               12.01  "benzyl [2-(4-{[2-(6-amino-9H-purin-9-yl)ethyl]carbamoyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate"  
QVV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(phenylmethyl) ~{N}-[2-[4-[2-(6-aminopurin-9-yl)ethylcarbamoyl]-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidin-2-yl]propan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QVV  "Create component"  2020-01-02  RCSB  
QVV  "Initial release"   2021-02-10  RCSB  
QVV  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     QVV
_pdbx_chem_comp_synonyms.name        SJ000988248
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
