data_Q2V
#

_chem_comp.id                                   Q2V
_chem_comp.name                                 "5'-([(3S)-3-amino-3-carboxypropyl]{[1-(3,3-diphenylpropyl)azetidin-3-yl]methyl}amino)-5'-deoxyadenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H42 N8 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-11
_chem_comp.pdbx_modified_date                   2020-06-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       630.737
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q2V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6U9K
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q2V  N1   N1   N  0  1  Y  N  N  263.342  -89.311  212.380   -8.865  -2.330   1.867  N1   Q2V   1  
Q2V  C2   C1   C  0  1  Y  N  N  264.971  -89.496  214.571   -6.489  -1.614   0.797  C2   Q2V   2  
Q2V  C3   C2   C  0  1  Y  N  N  265.575  -89.384  213.292   -7.528  -0.672   0.877  C3   Q2V   3  
Q2V  O4   O1   O  0  1  N  N  N  267.112  -89.621  217.547   -3.115  -0.493  -0.139  O4   Q2V   4  
Q2V  C6   C3   C  0  1  N  N  R  265.478  -91.359  217.154   -4.107  -2.175  -1.481  C6   Q2V   5  
Q2V  C8   C4   C  0  1  N  N  R  267.587  -90.822  218.117   -2.022  -1.060  -0.893  C8   Q2V   6  
Q2V  C9   C5   C  0  1  N  N  N  269.120  -90.847  217.918   -1.140   0.050  -1.468  C9   Q2V   7  
Q2V  C10  C6   C  0  1  N  N  N  270.571  -90.133  219.856    0.771   1.424  -0.900  C10  Q2V   8  
Q2V  C11  C7   C  0  1  N  N  N  269.595  -90.738  220.895    1.735   1.734   0.247  C11  Q2V   9  
Q2V  C12  C8   C  0  1  N  N  N  268.367  -89.859  221.333    2.908   2.645  -0.157  C12  Q2V  10  
Q2V  C13  C9   C  0  1  N  N  N  268.661  -88.963  223.676    5.025   1.460  -0.020  C13  Q2V  11  
Q2V  C16  C10  C  0  1  Y  N  N  265.827  -86.383  224.060    8.268  -0.147   1.224  C16  Q2V  12  
Q2V  C17  C11  C  0  1  Y  N  N  264.581  -87.033  224.038    7.871  -1.179   2.054  C17  Q2V  13  
Q2V  C18  C12  C  0  1  Y  N  N  263.449  -86.368  223.555    8.764  -1.722   2.958  C18  Q2V  14  
Q2V  C19  C13  C  0  1  Y  N  N  263.536  -85.044  223.097   10.055  -1.233   3.032  C19  Q2V  15  
Q2V  C20  C14  C  0  1  Y  N  N  264.767  -84.378  223.136   10.452  -0.202   2.202  C20  Q2V  16  
Q2V  C21  C15  C  0  1  Y  N  N  265.909  -85.036  223.617    9.560   0.337   1.294  C21  Q2V  17  
Q2V  C22  C16  C  0  1  Y  N  N  267.269  -87.251  225.943    7.052  -0.535  -0.880  C22  Q2V  18  
Q2V  C23  C17  C  0  1  Y  N  N  268.064  -86.304  226.625    7.454  -0.229  -2.167  C23  Q2V  19  
Q2V  C24  C18  C  0  1  Y  N  N  268.268  -86.398  228.011    7.238  -1.130  -3.192  C24  Q2V  20  
Q2V  C25  C19  C  0  1  Y  N  N  267.680  -87.443  228.737    6.619  -2.339  -2.931  C25  Q2V  21  
Q2V  C26  C20  C  0  1  Y  N  N  266.888  -88.396  228.076    6.218  -2.646  -1.644  C26  Q2V  22  
Q2V  C27  C21  C  0  1  Y  N  N  266.672  -88.305  226.689    6.433  -1.744  -0.619  C27  Q2V  23  
Q2V  C28  C22  C  0  1  N  N  N  270.047  -90.630  222.342    2.793   0.640   0.480  C28  Q2V  24  
Q2V  C29  C23  C  0  1  N  N  N  270.361  -88.656  217.794   -1.262   1.580   0.404  C29  Q2V  25  
Q2V  C30  C24  C  0  1  N  N  N  270.467  -87.280  218.535   -1.946   2.581  -0.530  C30  Q2V  26  
Q2V  O3   O2   O  0  1  N  N  N  268.893  -84.768  220.424   -4.606   4.425  -0.837  O3   Q2V  27  
Q2V  C32  C25  C  0  1  N  N  N  269.224  -85.925  220.270   -3.426   4.569  -0.621  C32  Q2V  28  
Q2V  O2   O3   O  0  1  N  N  N  269.769  -86.526  221.334   -2.754   5.576  -1.200  O2   Q2V  29  
Q2V  C31  C26  C  0  1  N  N  S  269.075  -86.793  219.011   -2.708   3.616   0.300  C31  Q2V  30  
Q2V  N7   N2   N  0  1  N  N  N  268.473  -85.930  217.989   -3.685   2.933   1.157  N7   Q2V  31  
Q2V  N5   N3   N  0  1  N  N  N  269.747  -89.694  218.694   -0.392   0.694  -0.380  N5   Q2V  32  
Q2V  C7   C27  C  0  1  N  N  S  266.862  -91.995  217.377   -2.699  -1.855  -2.032  C7   Q2V  33  
Q2V  O1   O4   O  0  1  N  N  N  266.709  -93.079  218.221   -1.980  -3.061  -2.296  O1   Q2V  34  
Q2V  O    O5   O  0  1  N  N  N  264.678  -91.286  218.282   -4.300  -3.588  -1.388  O    Q2V  35  
Q2V  C5   C28  C  0  1  N  N  R  265.893  -89.854  216.900   -4.114  -1.534  -0.075  C5   Q2V  36  
Q2V  N4   N4   N  0  1  Y  N  N  266.021  -89.592  215.473   -5.430  -0.961   0.218  N4   Q2V  37  
Q2V  N2   N5   N  0  1  Y  N  N  263.614  -89.516  214.808   -6.697  -2.845   1.252  N2   Q2V  38  
Q2V  C1   C29  C  0  1  Y  N  N  262.891  -89.424  213.667   -7.859  -3.181   1.771  C1   Q2V  39  
Q2V  C4   C30  C  0  1  Y  N  N  267.219  -89.513  214.711   -5.828   0.317  -0.037  C4   Q2V  40  
Q2V  N3   N6   N  0  1  Y  N  N  266.980  -89.392  213.393   -7.059   0.485   0.351  N3   Q2V  41  
Q2V  C    C31  C  0  1  Y  N  N  264.689  -89.293  212.176   -8.750  -1.078   1.439  C    Q2V  42  
Q2V  N    N7   N  0  1  N  N  N  265.166  -89.168  210.903   -9.810  -0.194   1.543  N    Q2V  43  
Q2V  N6   N8   N  0  1  N  N  N  268.690  -90.135  222.767    3.756   1.749   0.661  N6   Q2V  44  
Q2V  C14  C32  C  0  1  N  N  N  267.209  -88.434  223.673    5.971   0.746   0.947  C14  Q2V  45  
Q2V  C15  C33  C  0  1  N  N  N  267.117  -87.102  224.426    7.293   0.445   0.239  C15  Q2V  46  
Q2V  H1   H1   H  0  1  N  N  N  264.975  -91.783  216.272   -4.875  -1.726  -2.111  H1   Q2V  47  
Q2V  H3   H2   H  0  1  N  N  N  267.356  -90.875  219.191   -1.432  -1.726  -0.264  H3   Q2V  48  
Q2V  H11  H3   H  0  1  N  N  N  269.523  -91.801  218.288   -0.440  -0.377  -2.186  H11  Q2V  49  
Q2V  H12  H4   H  0  1  N  N  N  269.354  -90.740  216.848   -1.765   0.790  -1.967  H12  Q2V  50  
Q2V  H13  H5   H  0  1  N  N  N  271.302  -90.891  219.537    0.440   2.356  -1.358  H13  Q2V  51  
Q2V  H14  H6   H  0  1  N  N  N  271.101  -89.273  220.291    1.280   0.813  -1.646  H14  Q2V  52  
Q2V  H15  H7   H  0  1  N  N  N  269.288  -91.759  220.626    1.224   2.053   1.156  H15  Q2V  53  
Q2V  H17  H8   H  0  1  N  N  N  268.448  -88.799  221.049    3.139   2.617  -1.222  H17  Q2V  54  
Q2V  H16  H9   H  0  1  N  N  N  267.393  -90.252  221.007    2.832   3.658   0.237  H16  Q2V  55  
Q2V  H19  H10  H  0  1  N  N  N  268.952  -89.265  224.693    4.838   0.822  -0.883  H19  Q2V  56  
Q2V  H18  H11  H  0  1  N  N  N  269.349  -88.185  223.313    5.481   2.394  -0.350  H18  Q2V  57  
Q2V  H23  H12  H  0  1  N  N  N  264.497  -88.049  224.395    6.862  -1.561   1.996  H23  Q2V  58  
Q2V  H24  H13  H  0  1  N  N  N  262.498  -86.879  223.534    8.454  -2.528   3.607  H24  Q2V  59  
Q2V  H25  H14  H  0  1  N  N  N  262.659  -84.542  222.717   10.752  -1.654   3.742  H25  Q2V  60  
Q2V  H26  H15  H  0  1  N  N  N  264.838  -83.356  222.795   11.461   0.180   2.260  H26  Q2V  61  
Q2V  H27  H16  H  0  1  N  N  N  266.855  -84.516  223.651    9.871   1.143   0.645  H27  Q2V  62  
Q2V  H28  H17  H  0  1  N  N  N  268.521  -85.496  226.073    7.937   0.715  -2.371  H28  Q2V  63  
Q2V  H29  H18  H  0  1  N  N  N  268.878  -85.665  228.518    7.551  -0.890  -4.197  H29  Q2V  64  
Q2V  H30  H19  H  0  1  N  N  N  267.836  -87.515  229.803    6.450  -3.043  -3.732  H30  Q2V  65  
Q2V  H31  H20  H  0  1  N  N  N  266.442  -89.204  228.636    5.734  -3.590  -1.440  H31  Q2V  66  
Q2V  H32  H21  H  0  1  N  N  N  266.053  -89.036  226.190    6.119  -1.983   0.386  H32  Q2V  67  
Q2V  H34  H22  H  0  1  N  N  N  270.329  -91.593  222.792    2.626   0.052   1.383  H34  Q2V  68  
Q2V  H33  H23  H  0  1  N  N  N  270.855  -89.901  222.501    2.990   0.026  -0.399  H33  Q2V  69  
Q2V  H35  H24  H  0  1  N  N  N  269.734  -88.537  216.898   -0.665   2.120   1.139  H35  Q2V  70  
Q2V  H36  H25  H  0  1  N  N  N  271.367  -88.985  217.496   -2.019   0.986   0.917  H36  Q2V  71  
Q2V  H38  H26  H  0  1  N  N  N  271.126  -87.392  219.408   -1.194   3.084  -1.137  H38  Q2V  72  
Q2V  H37  H27  H  0  1  N  N  N  270.893  -86.534  217.848   -2.643   2.052  -1.180  H37  Q2V  73  
Q2V  H39  H28  H  0  1  N  N  N  269.804  -85.914  222.060   -3.258   6.161  -1.783  H39  Q2V  74  
Q2V  H4   H29  H  0  1  N  N  N  268.431  -87.658  219.225   -2.005   4.171   0.921  H4   Q2V  75  
Q2V  H40  H30  H  0  1  N  N  N  267.575  -85.619  218.301   -4.272   2.315   0.616  H40  Q2V  76  
Q2V  H42  H31  H  0  1  N  N  N  269.064  -85.139  217.831   -3.225   2.433   1.903  H42  Q2V  77  
Q2V  H2   H34  H  0  1  N  N  N  267.357  -92.232  216.424   -2.771  -1.247  -2.933  H2   Q2V  78  
Q2V  H10  H35  H  0  1  N  N  N  267.554  -93.486  218.371   -2.394  -3.628  -2.961  H10  Q2V  79  
Q2V  H9   H36  H  0  1  N  N  N  264.377  -92.157  218.514   -4.245  -4.048  -2.237  H9   Q2V  80  
Q2V  H    H37  H  0  1  N  N  N  265.107  -89.211  217.322   -3.844  -2.273   0.680  H    Q2V  81  
Q2V  H7   H38  H  0  1  N  N  N  261.818  -89.442  213.788   -7.996  -4.190   2.132  H7   Q2V  82  
Q2V  H8   H39  H  0  1  N  N  N  268.209  -89.546  215.142   -5.212   1.079  -0.492  H8   Q2V  83  
Q2V  H5   H40  H  0  1  N  N  N  264.399  -89.104  210.264  -10.649  -0.486   1.933  H5   Q2V  84  
Q2V  H6   H41  H  0  1  N  N  N  265.725  -88.342  210.836   -9.714   0.718   1.227  H6   Q2V  85  
Q2V  H20  H43  H  0  1  N  N  N  266.881  -88.285  222.634    6.159   1.384   1.811  H20  Q2V  86  
Q2V  H21  H44  H  0  1  N  N  N  266.555  -89.171  224.162    5.515  -0.188   1.278  H21  Q2V  87  
Q2V  H22  H45  H  0  1  N  N  N  267.950  -86.475  224.077    7.705   1.368  -0.169  H22  Q2V  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q2V  N    C    SING  N  N   1  
Q2V  C    N1   DOUB  Y  N   2  
Q2V  C    C3   SING  Y  N   3  
Q2V  N1   C1   SING  Y  N   4  
Q2V  C3   N3   SING  Y  N   5  
Q2V  C3   C2   DOUB  Y  N   6  
Q2V  N3   C4   DOUB  Y  N   7  
Q2V  C1   N2   DOUB  Y  N   8  
Q2V  C2   N2   SING  Y  N   9  
Q2V  C2   N4   SING  Y  N  10  
Q2V  C4   N4   SING  Y  N  11  
Q2V  N4   C5   SING  N  N  12  
Q2V  C5   C6   SING  N  N  13  
Q2V  C5   O4   SING  N  N  14  
Q2V  C6   C7   SING  N  N  15  
Q2V  C6   O    SING  N  N  16  
Q2V  C7   C8   SING  N  N  17  
Q2V  C7   O1   SING  N  N  18  
Q2V  O4   C8   SING  N  N  19  
Q2V  C29  C30  SING  N  N  20  
Q2V  C29  N5   SING  N  N  21  
Q2V  C9   C8   SING  N  N  22  
Q2V  C9   N5   SING  N  N  23  
Q2V  N7   C31  SING  N  N  24  
Q2V  C30  C31  SING  N  N  25  
Q2V  N5   C10  SING  N  N  26  
Q2V  C31  C32  SING  N  N  27  
Q2V  C10  C11  SING  N  N  28  
Q2V  C32  O3   DOUB  N  N  29  
Q2V  C32  O2   SING  N  N  30  
Q2V  C11  C12  SING  N  N  31  
Q2V  C11  C28  SING  N  N  32  
Q2V  C12  N6   SING  N  N  33  
Q2V  C28  N6   SING  N  N  34  
Q2V  N6   C13  SING  N  N  35  
Q2V  C19  C20  DOUB  Y  N  36  
Q2V  C19  C18  SING  Y  N  37  
Q2V  C20  C21  SING  Y  N  38  
Q2V  C18  C17  DOUB  Y  N  39  
Q2V  C21  C16  DOUB  Y  N  40  
Q2V  C14  C13  SING  N  N  41  
Q2V  C14  C15  SING  N  N  42  
Q2V  C17  C16  SING  Y  N  43  
Q2V  C16  C15  SING  N  N  44  
Q2V  C15  C22  SING  N  N  45  
Q2V  C22  C23  DOUB  Y  N  46  
Q2V  C22  C27  SING  Y  N  47  
Q2V  C23  C24  SING  Y  N  48  
Q2V  C27  C26  DOUB  Y  N  49  
Q2V  C24  C25  DOUB  Y  N  50  
Q2V  C26  C25  SING  Y  N  51  
Q2V  C6   H1   SING  N  N  52  
Q2V  C8   H3   SING  N  N  53  
Q2V  C9   H11  SING  N  N  54  
Q2V  C9   H12  SING  N  N  55  
Q2V  C10  H13  SING  N  N  56  
Q2V  C10  H14  SING  N  N  57  
Q2V  C11  H15  SING  N  N  58  
Q2V  C12  H17  SING  N  N  59  
Q2V  C12  H16  SING  N  N  60  
Q2V  C13  H19  SING  N  N  61  
Q2V  C13  H18  SING  N  N  62  
Q2V  C17  H23  SING  N  N  63  
Q2V  C18  H24  SING  N  N  64  
Q2V  C19  H25  SING  N  N  65  
Q2V  C20  H26  SING  N  N  66  
Q2V  C21  H27  SING  N  N  67  
Q2V  C23  H28  SING  N  N  68  
Q2V  C24  H29  SING  N  N  69  
Q2V  C25  H30  SING  N  N  70  
Q2V  C26  H31  SING  N  N  71  
Q2V  C27  H32  SING  N  N  72  
Q2V  C28  H34  SING  N  N  73  
Q2V  C28  H33  SING  N  N  74  
Q2V  C29  H35  SING  N  N  75  
Q2V  C29  H36  SING  N  N  76  
Q2V  C30  H38  SING  N  N  77  
Q2V  C30  H37  SING  N  N  78  
Q2V  O2   H39  SING  N  N  79  
Q2V  C31  H4   SING  N  N  80  
Q2V  N7   H40  SING  N  N  81  
Q2V  N7   H42  SING  N  N  82  
Q2V  C7   H2   SING  N  N  83  
Q2V  O1   H10  SING  N  N  84  
Q2V  O    H9   SING  N  N  85  
Q2V  C5   H    SING  N  N  86  
Q2V  C1   H7   SING  N  N  87  
Q2V  C4   H8   SING  N  N  88  
Q2V  N    H5   SING  N  N  89  
Q2V  N    H6   SING  N  N  90  
Q2V  C14  H20  SING  N  N  91  
Q2V  C14  H21  SING  N  N  92  
Q2V  C15  H22  SING  N  N  93  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q2V  SMILES            ACDLabs               12.01  "n6cnc5n(C4OC(CN(CC3CN(CCC(c1ccccc1)c2ccccc2)C3)CCC(C(=O)O)N)C(C4O)O)cnc5c6N"  
Q2V  InChI             InChI                 1.03   "InChI=1S/C33H42N8O5/c34-25(33(44)45)12-14-40(18-26-28(42)29(43)32(46-26)41-20-38-27-30(35)36-19-37-31(27)41)17-21-15-39(16-21)13-11-24(22-7-3-1-4-8-22)23-9-5-2-6-10-23/h1-10,19-21,24-26,28-29,32,42-43H,11-18,34H2,(H,44,45)(H2,35,36,37)/t25-,26+,28+,29+,32+/m0/s1"  
Q2V  InChIKey          InChI                 1.03   VHPRRJZGFMSHQV-JUCHKJSUSA-N  
Q2V  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCN(CC1CN(CCC(c2ccccc2)c3ccccc3)C1)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(O)=O"  
Q2V  SMILES            CACTVS                3.385  "N[CH](CCN(CC1CN(CCC(c2ccccc2)c3ccccc3)C1)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(O)=O"  
Q2V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C(CCN2CC(C2)CN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)c6ccccc6"  
Q2V  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C(CCN2CC(C2)CN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)c6ccccc6"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Q2V  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-([(3S)-3-amino-3-carboxypropyl]{[1-(3,3-diphenylpropyl)azetidin-3-yl]methyl}amino)-5'-deoxyadenosine"  
Q2V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[1-(3,3-diphenylpropyl)azetidin-3-yl]methyl]amino]-2-azanyl-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q2V  "Create component"  2019-09-11  RCSB  
Q2V  "Initial release"   2020-07-01  RCSB  
##
