data_PNV
#

_chem_comp.id                                   PNV
_chem_comp.name                                 "(2S,5R,6R)-3,3-DIMETHYL-7-OXO-6-(2-PHENOXYACETAMIDO)-4-THIA-1- AZABICYCLO(3.2.0)HEPTANE-2-CARBOXYLIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H18 N2 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PENICILLIN V"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-11-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       350.390
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PNV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2Z71
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PNV  C24  C1   C  0  1  Y  N  N  13.666  52.150  33.119   6.110   0.731   0.169  C24  PNV   1  
PNV  C23  C2   C  0  1  Y  N  N  12.534  51.925  32.336   7.256   0.016   0.460  C23  PNV   2  
PNV  C22  C3   C  0  1  Y  N  N  12.010  52.958  31.571   7.183  -1.343   0.701  C22  PNV   3  
PNV  C21  C4   C  0  1  Y  N  N  12.609  54.212  31.594   5.962  -1.991   0.651  C21  PNV   4  
PNV  C20  C5   C  0  1  Y  N  N  13.744  54.433  32.376   4.813  -1.282   0.361  C20  PNV   5  
PNV  C19  C6   C  0  1  Y  N  N  14.287  53.403  33.153   4.884   0.083   0.119  C19  PNV   6  
PNV  O1   O1   O  0  1  N  N  N  15.410  53.669  33.922   3.755   0.784  -0.161  O1   PNV   7  
PNV  C2   C7   C  0  1  N  N  N  15.949  52.860  34.983   2.528   0.052  -0.196  C2   PNV   8  
PNV  C3   C8   C  0  1  N  N  N  15.270  52.991  36.341   1.393   0.988  -0.520  C3   PNV   9  
PNV  O18  O2   O  0  1  N  N  N  15.511  53.932  37.073   1.612   2.167  -0.702  O18  PNV  10  
PNV  N4   N1   N  0  1  N  N  N  14.448  51.969  36.616   0.133   0.516  -0.606  N4   PNV  11  
PNV  C5   C9   C  0  1  N  N  R  13.559  51.550  37.726  -0.970   1.426  -0.920  C5   PNV  12  
PNV  C6   C10  C  0  1  N  N  N  12.677  52.458  38.537  -1.823   1.769   0.276  C6   PNV  13  
PNV  O17  O3   O  0  1  N  N  N  11.673  53.112  38.265  -1.690   2.463   1.263  O17  PNV  14  
PNV  C8   C11  C  0  1  N  N  R  14.286  51.198  39.059  -2.178   0.724  -1.534  C8   PNV  15  
PNV  N7   N2   N  0  1  N  N  N  13.380  52.184  39.623  -2.804   0.970  -0.223  N7   PNV  16  
PNV  S11  S1   S  0  1  N  N  N  15.707  52.027  39.704  -2.018  -1.097  -1.654  S11  PNV  17  
PNV  C10  C12  C  0  1  N  N  N  15.047  52.466  41.301  -3.333  -1.445  -0.410  C10  PNV  18  
PNV  C12  C13  C  0  1  N  N  N  15.319  51.315  42.283  -4.723  -1.415  -1.048  C12  PNV  19  
PNV  C15  C14  C  0  1  N  N  N  15.766  53.708  41.830  -3.082  -2.772   0.308  C15  PNV  20  
PNV  C9   C15  C  0  1  N  N  S  13.544  52.745  40.977  -3.123  -0.240   0.544  C9   PNV  21  
PNV  C13  C16  C  0  1  N  N  N  12.466  52.393  41.995  -4.383  -0.008   1.338  C13  PNV  22  
PNV  O14  O4   O  0  1  N  N  N  12.617  51.447  42.807  -4.673  -0.801   2.382  O14  PNV  23  
PNV  O16  O5   O  0  1  N  N  N  11.421  53.092  41.998  -5.131   0.891   1.036  O16  PNV  24  
PNV  H1   H1   H  0  1  N  N  N  14.071  51.342  33.710   6.168   1.793  -0.014  H1   PNV  25  
PNV  H2   H2   H  0  1  N  N  N  12.067  50.951  32.325   8.211   0.520   0.499  H2   PNV  26  
PNV  H3   H3   H  0  1  N  N  N  11.137  52.787  30.958   8.080  -1.900   0.927  H3   PNV  27  
PNV  H4   H4   H  0  1  N  N  N  12.195  55.017  31.005   5.907  -3.053   0.839  H4   PNV  28  
PNV  H5   H5   H  0  1  N  N  N  14.208  55.408  32.382   3.860  -1.788   0.322  H5   PNV  29  
PNV  H6   H6   H  0  1  N  N  N  15.877  51.807  34.672   2.589  -0.723  -0.960  H6   PNV  30  
PNV  H7   H7   H  0  1  N  N  N  17.007  53.133  35.109   2.353  -0.410   0.776  H7   PNV  31  
PNV  H8   H8   H  0  1  N  N  N  14.429  51.307  35.867  -0.042  -0.427  -0.460  H8   PNV  32  
PNV  H9   H9   H  0  1  N  N  N  12.975  50.673  37.410  -0.646   2.301  -1.485  H9   PNV  33  
PNV  H10  H10  H  0  1  N  N  N  14.204  50.155  39.400  -2.632   1.216  -2.394  H10  PNV  34  
PNV  H11  H11  H  0  1  N  N  N  14.916  51.574  43.273  -4.788  -2.188  -1.814  H11  PNV  35  
PNV  H12  H12  H  0  1  N  N  N  14.832  50.399  41.918  -5.478  -1.599  -0.283  H12  PNV  36  
PNV  H13  H13  H  0  1  N  N  N  16.403  51.148  42.361  -4.895  -0.439  -1.501  H13  PNV  37  
PNV  H14  H14  H  0  1  N  N  N  15.357  53.977  42.815  -2.110  -2.742   0.799  H14  PNV  38  
PNV  H15  H15  H  0  1  N  N  N  16.841  53.497  41.925  -3.861  -2.935   1.052  H15  PNV  39  
PNV  H16  H16  H  0  1  N  N  N  15.617  54.544  41.131  -3.097  -3.586  -0.418  H16  PNV  40  
PNV  H17  H17  H  0  1  N  N  N  13.481  53.837  40.856  -2.303  -0.460   1.227  H17  PNV  41  
PNV  H18  H18  H  0  1  N  N  N  11.850  51.382  43.364  -5.492  -0.613   2.860  H18  PNV  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PNV  C22  C21  DOUB  Y  N   1  
PNV  C22  C23  SING  Y  N   2  
PNV  C21  C20  SING  Y  N   3  
PNV  C23  C24  DOUB  Y  N   4  
PNV  C20  C19  DOUB  Y  N   5  
PNV  C24  C19  SING  Y  N   6  
PNV  C19  O1   SING  N  N   7  
PNV  O1   C2   SING  N  N   8  
PNV  C2   C3   SING  N  N   9  
PNV  C3   N4   SING  N  N  10  
PNV  C3   O18  DOUB  N  N  11  
PNV  N4   C5   SING  N  N  12  
PNV  C5   C6   SING  N  N  13  
PNV  C5   C8   SING  N  N  14  
PNV  O17  C6   DOUB  N  N  15  
PNV  C6   N7   SING  N  N  16  
PNV  C8   N7   SING  N  N  17  
PNV  C8   S11  SING  N  N  18  
PNV  N7   C9   SING  N  N  19  
PNV  S11  C10  SING  N  N  20  
PNV  C9   C10  SING  N  N  21  
PNV  C9   C13  SING  N  N  22  
PNV  C10  C15  SING  N  N  23  
PNV  C10  C12  SING  N  N  24  
PNV  C13  O16  DOUB  N  N  25  
PNV  C13  O14  SING  N  N  26  
PNV  C24  H1   SING  N  N  27  
PNV  C23  H2   SING  N  N  28  
PNV  C22  H3   SING  N  N  29  
PNV  C21  H4   SING  N  N  30  
PNV  C20  H5   SING  N  N  31  
PNV  C2   H6   SING  N  N  32  
PNV  C2   H7   SING  N  N  33  
PNV  N4   H8   SING  N  N  34  
PNV  C5   H9   SING  N  N  35  
PNV  C8   H10  SING  N  N  36  
PNV  C12  H11  SING  N  N  37  
PNV  C12  H12  SING  N  N  38  
PNV  C12  H13  SING  N  N  39  
PNV  C15  H14  SING  N  N  40  
PNV  C15  H15  SING  N  N  41  
PNV  C15  H16  SING  N  N  42  
PNV  C9   H17  SING  N  N  43  
PNV  O14  H18  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PNV  SMILES            ACDLabs               12.01  "c1c(cccc1)OCC(NC2C(N3C2SC(C)(C)C3C(=O)O)=O)=O"  
PNV  InChI             InChI                 1.03   "InChI=1S/C16H18N2O5S/c1-16(2)12(15(21)22)18-13(20)11(14(18)24-16)17-10(19)8-23-9-6-4-3-5-7-9/h3-7,11-12,14H,8H2,1-2H3,(H,17,19)(H,21,22)/t11-,12+,14-/m1/s1"  
PNV  InChIKey          InChI                 1.03   BPLBGHOLXOTWMN-MBNYWOFBSA-N  
PNV  SMILES_CANONICAL  CACTVS                3.385  "CC1(C)S[C@@H]2[C@H](NC(=O)COc3ccccc3)C(=O)N2[C@H]1C(O)=O"  
PNV  SMILES            CACTVS                3.385  "CC1(C)S[CH]2[CH](NC(=O)COc3ccccc3)C(=O)N2[CH]1C(O)=O"  
PNV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)COc3ccccc3)C(=O)O)C"  
PNV  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1(C(N2C(S1)C(C2=O)NC(=O)COc3ccccc3)C(=O)O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PNV  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,5R,6R)-3,3-dimethyl-7-oxo-6-[(phenoxyacetyl)amino]-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
PNV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S},5~{R},6~{R})-3,3-dimethyl-7-oxidanylidene-6-(2-phenoxyethanoylamino)-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PNV  "Create component"               2005-11-14  RCSB  
PNV  "Modify descriptor"              2011-06-04  RCSB  
PNV  "Modify model coordinates code"  2016-11-02  RCSB  
PNV  "Modify synonyms"                2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PNV
_pdbx_chem_comp_synonyms.name        "PENICILLIN V"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
