data_P5V
#

_chem_comp.id                                   P5V
_chem_comp.name                                 "(3S)-1'-(cyclopropanecarbonyl)-5-(quinoxalin-6-yl)spiro[indole-3,2'-pyrrolidin]-2(1H)-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H20 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-31
_chem_comp.pdbx_modified_date                   2019-08-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       384.431
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P5V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6PYU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P5V  C2   C1   C  0  1  N  N  N  42.557  12.497  36.237  -3.609  -1.719   0.041  C2   P5V   1  
P5V  C4   C2   C  0  1  Y  N  N  40.414  12.087  35.671  -1.477  -2.009   0.783  C4   P5V   2  
P5V  C5   C3   C  0  1  Y  N  N  39.167  11.502  35.519  -0.345  -2.451   1.468  C5   P5V   3  
P5V  C6   C4   C  0  1  Y  N  N  38.133  12.246  34.993   0.891  -1.916   1.187  C6   P5V   4  
P5V  C7   C5   C  0  1  Y  N  N  38.319  13.594  34.604   1.022  -0.926   0.213  C7   P5V   5  
P5V  C8   C6   C  0  1  Y  N  N  39.587  14.176  34.788  -0.108  -0.482  -0.475  C8   P5V   6  
P5V  C11  C7   C  0  1  N  N  N  42.072  14.979  36.552  -2.779  -1.095  -2.239  C11  P5V   7  
P5V  C12  C8   C  0  1  N  N  N  42.351  16.189  35.630  -3.758  -0.017  -2.777  C12  P5V   8  
P5V  C15  C9   C  0  1  N  N  N  43.307  13.193  33.503  -3.234   1.250   0.634  C15  P5V   9  
P5V  C17  C10  C  0  1  N  N  N  44.160  13.646  32.360  -3.671   2.692   0.675  C17  P5V  10  
P5V  C18  C11  C  0  1  N  N  N  44.511  12.606  31.300  -3.765   3.362   2.047  C18  P5V  11  
P5V  C19  C12  C  0  1  N  N  N  43.505  13.722  30.986  -2.631   3.734   1.089  C19  P5V  12  
P5V  C21  C13  C  0  1  Y  N  N  36.117  13.737  33.447   3.466  -0.792   0.601  C21  P5V  13  
P5V  C24  C14  C  0  1  Y  N  N  33.018  14.564  31.907   6.984  -0.109   0.682  C24  P5V  14  
P5V  C27  C15  C  0  1  Y  N  N  35.066  15.895  33.033   4.832   0.776  -0.670  C27  P5V  15  
P5V  O1   O1   O  0  1  N  N  N  43.674  12.305  36.628  -4.809  -1.845  -0.080  O1   P5V  16  
P5V  N3   N1   N  0  1  N  N  N  41.581  11.570  36.193  -2.814  -2.394   0.892  N3   P5V  17  
P5V  C9   C16  C  0  1  Y  N  N  40.607  13.426  35.300  -1.339  -1.024  -0.192  C9   P5V  18  
P5V  C10  C17  C  0  1  N  N  S  42.038  13.767  35.611  -2.721  -0.781  -0.735  C10  P5V  19  
P5V  C13  C18  C  0  1  N  N  N  43.113  15.543  34.440  -3.417   1.195  -1.874  C13  P5V  20  
P5V  N14  N2   N  0  1  N  N  N  42.874  14.078  34.451  -3.132   0.611  -0.548  N14  P5V  21  
P5V  O16  O2   O  0  1  N  N  N  43.058  12.001  33.564  -2.973   0.666   1.664  O16  P5V  22  
P5V  C20  C19  C  0  1  Y  N  N  37.191  14.377  34.035   2.353  -0.345  -0.086  C20  P5V  23  
P5V  C22  C20  C  0  1  Y  N  N  35.054  14.480  32.951   4.724  -0.236   0.318  C22  P5V  24  
P5V  N23  N3   N  0  1  Y  N  N  34.026  13.850  32.378   5.820  -0.647   0.966  N23  P5V  25  
P5V  C25  C21  C  0  1  Y  N  N  33.012  15.962  32.005   7.091   0.887  -0.290  C25  P5V  26  
P5V  N26  N4   N  0  1  Y  N  N  34.035  16.611  32.546   6.030   1.303  -0.944  N26  P5V  27  
P5V  C28  C22  C  0  1  Y  N  N  36.150  16.514  33.633   3.681   1.201  -1.359  C28  P5V  28  
P5V  C29  C23  C  0  1  Y  N  N  37.176  15.779  34.100   2.473   0.654  -1.066  C29  P5V  29  
P5V  H1   H1   H  0  1  N  N  N  39.007  10.474  35.810  -0.440  -3.217   2.223  H1   P5V  30  
P5V  H2   H2   H  0  1  N  N  N  37.161  11.791  34.875   1.762  -2.263   1.722  H2   P5V  31  
P5V  H3   H3   H  0  1  N  N  N  39.753  15.210  34.526  -0.015   0.284  -1.230  H3   P5V  32  
P5V  H4   H4   H  0  1  N  N  N  41.106  15.098  37.065  -3.174  -2.096  -2.409  H4   P5V  33  
P5V  H5   H5   H  0  1  N  N  N  42.873  14.868  37.298  -1.794  -0.988  -2.694  H5   P5V  34  
P5V  H6   H6   H  0  1  N  N  N  42.973  16.940  36.139  -3.555   0.207  -3.824  H6   P5V  35  
P5V  H7   H7   H  0  1  N  N  N  41.414  16.656  35.294  -4.794  -0.328  -2.640  H7   P5V  36  
P5V  H8   H8   H  0  1  N  N  N  44.929  14.401  32.579  -4.404   2.983  -0.078  H8   P5V  37  
P5V  H9   H9   H  0  1  N  N  N  44.165  11.568  31.411  -4.559   4.095   2.196  H9   P5V  38  
P5V  H10  H10  H  0  1  N  N  N  45.505  12.613  30.830  -3.510   2.761   2.920  H10  P5V  39  
P5V  H11  H11  H  0  1  N  N  N  43.778  14.529  30.290  -1.630   3.378   1.331  H11  P5V  40  
P5V  H12  H12  H  0  1  N  N  N  42.437  13.484  30.871  -2.679   4.711   0.608  H12  P5V  41  
P5V  H13  H13  H  0  1  N  N  N  36.104  12.660  33.373   3.368  -1.560   1.354  H13  P5V  42  
P5V  H14  H14  H  0  1  N  N  N  32.185  14.061  31.439   7.868  -0.441   1.206  H14  P5V  43  
P5V  H15  H15  H  0  1  N  N  N  41.689  10.625  36.501  -3.133  -3.069   1.510  H15  P5V  44  
P5V  H16  H16  H  0  1  N  N  N  44.190  15.742  34.540  -2.539   1.717  -2.255  H16  P5V  45  
P5V  H17  H17  H  0  1  N  N  N  42.748  15.969  33.494  -4.267   1.875  -1.814  H17  P5V  46  
P5V  H18  H18  H  0  1  N  N  N  32.163  16.518  31.635   8.056   1.318  -0.510  H18  P5V  47  
P5V  H19  H19  H  0  1  N  N  N  36.172  17.590  33.726   3.756   1.971  -2.112  H19  P5V  48  
P5V  H20  H20  H  0  1  N  N  N  38.020  16.287  34.542   1.594   0.992  -1.594  H20  P5V  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P5V  C19  C18  SING  N  N   1  
P5V  C19  C17  SING  N  N   2  
P5V  C18  C17  SING  N  N   3  
P5V  C24  C25  DOUB  Y  N   4  
P5V  C24  N23  SING  Y  N   5  
P5V  C25  N26  SING  Y  N   6  
P5V  C17  C15  SING  N  N   7  
P5V  N23  C22  DOUB  Y  N   8  
P5V  N26  C27  DOUB  Y  N   9  
P5V  C22  C27  SING  Y  N  10  
P5V  C22  C21  SING  Y  N  11  
P5V  C27  C28  SING  Y  N  12  
P5V  C21  C20  DOUB  Y  N  13  
P5V  C15  O16  DOUB  N  N  14  
P5V  C15  N14  SING  N  N  15  
P5V  C28  C29  DOUB  Y  N  16  
P5V  C20  C29  SING  Y  N  17  
P5V  C20  C7   SING  N  N  18  
P5V  C13  N14  SING  N  N  19  
P5V  C13  C12  SING  N  N  20  
P5V  N14  C10  SING  N  N  21  
P5V  C7   C8   DOUB  Y  N  22  
P5V  C7   C6   SING  Y  N  23  
P5V  C8   C9   SING  Y  N  24  
P5V  C6   C5   DOUB  Y  N  25  
P5V  C9   C10  SING  N  N  26  
P5V  C9   C4   DOUB  Y  N  27  
P5V  C5   C4   SING  Y  N  28  
P5V  C10  C2   SING  N  N  29  
P5V  C10  C11  SING  N  N  30  
P5V  C12  C11  SING  N  N  31  
P5V  C4   N3   SING  N  N  32  
P5V  N3   C2   SING  N  N  33  
P5V  C2   O1   DOUB  N  N  34  
P5V  C5   H1   SING  N  N  35  
P5V  C6   H2   SING  N  N  36  
P5V  C8   H3   SING  N  N  37  
P5V  C11  H4   SING  N  N  38  
P5V  C11  H5   SING  N  N  39  
P5V  C12  H6   SING  N  N  40  
P5V  C12  H7   SING  N  N  41  
P5V  C17  H8   SING  N  N  42  
P5V  C18  H9   SING  N  N  43  
P5V  C18  H10  SING  N  N  44  
P5V  C19  H11  SING  N  N  45  
P5V  C19  H12  SING  N  N  46  
P5V  C21  H13  SING  N  N  47  
P5V  C24  H14  SING  N  N  48  
P5V  N3   H15  SING  N  N  49  
P5V  C13  H16  SING  N  N  50  
P5V  C13  H17  SING  N  N  51  
P5V  C25  H18  SING  N  N  52  
P5V  C28  H19  SING  N  N  53  
P5V  C29  H20  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P5V  SMILES            ACDLabs               12.01  "C2(=O)Nc1ccc(cc1C24CCCN4C(=O)C3CC3)c5cc6c(cc5)nccn6"  
P5V  InChI             InChI                 1.03   "InChI=1S/C23H20N4O2/c28-21(14-2-3-14)27-11-1-8-23(27)17-12-15(4-6-18(17)26-22(23)29)16-5-7-19-20(13-16)25-10-9-24-19/h4-7,9-10,12-14H,1-3,8,11H2,(H,26,29)/t23-/m0/s1"  
P5V  InChIKey          InChI                 1.03   PXPGVPPGCPSCSN-QHCPKHFHSA-N  
P5V  SMILES_CANONICAL  CACTVS                3.385  "O=C1Nc2ccc(cc2[C@@]13CCCN3C(=O)C4CC4)c5ccc6nccnc6c5"  
P5V  SMILES            CACTVS                3.385  "O=C1Nc2ccc(cc2[C]13CCCN3C(=O)C4CC4)c5ccc6nccnc6c5"  
P5V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1c3ccc4c(c3)[C@@]5(CCCN5C(=O)C6CC6)C(=O)N4)nccn2"  
P5V  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1c3ccc4c(c3)C5(CCCN5C(=O)C6CC6)C(=O)N4)nccn2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P5V  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3S)-1'-(cyclopropanecarbonyl)-5-(quinoxalin-6-yl)spiro[indole-3,2'-pyrrolidin]-2(1H)-one"  
P5V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{S})-1'-cyclopropylcarbonyl-5-quinoxalin-6-yl-spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P5V  "Create component"  2019-07-31  RCSB  
P5V  "Initial release"   2019-08-28  RCSB  
##
