data_NCV
# 
_chem_comp.id                                    NCV 
_chem_comp.name                                  "N-Methyl-6-(1,3-dihydroxy-isobutyl)thymine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "6-[3-hydroxy-2-(hydroxymethyl)propyl]-1,5-dimethylpyrimidine-2,4(1H,3H)-dione; N-methyl-DHBT" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-29 
_chem_comp.pdbx_modified_date                    2020-05-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        228.245 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NCV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3F0T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NCV N1   N1   N 0 1 N N N 45.914 83.844 54.581 -1.037 1.227  -0.232 N1   NCV 1  
NCV C6   C6   C 0 1 N N N 47.018 84.163 55.499 -0.328 2.499  -0.390 C6   NCV 2  
NCV C5   C5   C 0 1 N N N 46.109 82.774 53.601 -0.446 0.065  -0.650 C5   NCV 3  
NCV C11  C11  C 0 1 N N N 47.503 82.120 53.693 0.924  0.095  -1.276 C11  NCV 4  
NCV C12  C12  C 0 1 N N N 48.649 82.313 52.662 1.983  0.224  -0.178 C12  NCV 5  
NCV C14  C14  C 0 1 N N N 49.879 82.817 53.442 1.972  -1.035 0.691  C14  NCV 6  
NCV O4   O4   O 0 1 N N N 49.606 84.076 54.079 2.876  -0.867 1.785  O4   NCV 7  
NCV C13  C13  C 0 1 N N N 48.992 80.967 51.983 3.363  0.390  -0.817 C13  NCV 8  
NCV O3   O3   O 0 1 N N N 49.979 80.273 52.766 4.335  0.626  0.203  O3   NCV 9  
NCV C3   C3   C 0 1 N N N 45.013 82.586 52.803 -1.098 -1.108 -0.500 C3   NCV 10 
NCV C4   C4   C 0 1 N N N 44.947 81.546 51.700 -0.463 -2.397 -0.954 C4   NCV 11 
NCV C2   C2   C 0 1 N N N 43.791 83.475 53.051 -2.384 -1.110 0.091  C2   NCV 12 
NCV O2   O2   O 0 1 N N N 42.827 83.285 52.340 -2.991 -2.156 0.237  O2   NCV 13 
NCV N2   N2   N 0 1 N N N 43.720 84.432 53.988 -2.932 0.056  0.490  N2   NCV 14 
NCV C1   C1   C 0 1 N N N 44.747 84.634 54.752 -2.260 1.211  0.327  C1   NCV 15 
NCV O1   O1   O 0 1 N N N 44.732 85.488 55.622 -2.764 2.254  0.697  O1   NCV 16 
NCV H6   H6   H 0 1 N N N 47.957 84.243 54.931 -0.982 3.319  -0.094 H6   NCV 17 
NCV H6A  H6A  H 0 1 N N N 46.812 85.119 56.002 0.562  2.499  0.239  H6A  NCV 18 
NCV H6B  H6B  H 0 1 N N N 47.111 83.366 56.251 -0.036 2.626  -1.433 H6B  NCV 19 
NCV H11  H11  H 0 1 N N N 47.920 82.489 54.642 1.090  -0.826 -1.834 H11  NCV 20 
NCV H11A H11A H 0 0 N N N 47.249 81.063 53.526 0.997  0.947  -1.952 H11A NCV 21 
NCV H12  H12  H 0 1 N N N 48.347 83.027 51.881 1.762  1.094  0.440  H12  NCV 22 
NCV H14  H14  H 0 1 N N N 50.142 82.077 54.212 0.965  -1.204 1.074  H14  NCV 23 
NCV H14A H14A H 0 0 N N N 50.710 82.955 52.735 2.280  -1.893 0.092  H14A NCV 24 
NCV HO4  HO4  H 0 1 N N N 49.546 83.950 55.019 2.920  -1.629 2.379  HO4  NCV 25 
NCV H13  H13  H 0 1 N N N 48.083 80.351 51.909 3.622  -0.517 -1.363 H13  NCV 26 
NCV H13A H13A H 0 0 N N N 49.390 81.156 50.975 3.345  1.236  -1.505 H13A NCV 27 
NCV HO3  HO3  H 0 1 N N N 50.753 80.120 52.237 5.235  0.742  -0.131 HO3  NCV 28 
NCV H4   H4   H 0 1 N N N 44.931 82.049 50.722 0.192  -2.776 -0.169 H4   NCV 29 
NCV H4A  H4A  H 0 1 N N N 45.828 80.891 51.761 -1.241 -3.131 -1.163 H4A  NCV 30 
NCV H4B  H4B  H 0 1 N N N 44.034 80.945 51.818 0.119  -2.217 -1.858 H4B  NCV 31 
NCV HN2  HN2  H 0 1 N N N 42.890 84.979 54.095 -3.813 0.062  0.895  HN2  NCV 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NCV C5  N1   SING N N 1  
NCV N1  C1   SING N N 2  
NCV N1  C6   SING N N 3  
NCV C6  H6   SING N N 4  
NCV C6  H6A  SING N N 5  
NCV C6  H6B  SING N N 6  
NCV C3  C5   DOUB N N 7  
NCV C5  C11  SING N N 8  
NCV C12 C11  SING N N 9  
NCV C11 H11  SING N N 10 
NCV C11 H11A SING N N 11 
NCV C13 C12  SING N N 12 
NCV C12 C14  SING N N 13 
NCV C12 H12  SING N N 14 
NCV C14 O4   SING N N 15 
NCV C14 H14  SING N N 16 
NCV C14 H14A SING N N 17 
NCV O4  HO4  SING N N 18 
NCV C13 O3   SING N N 19 
NCV C13 H13  SING N N 20 
NCV C13 H13A SING N N 21 
NCV O3  HO3  SING N N 22 
NCV C4  C3   SING N N 23 
NCV C3  C2   SING N N 24 
NCV C4  H4   SING N N 25 
NCV C4  H4A  SING N N 26 
NCV C4  H4B  SING N N 27 
NCV O2  C2   DOUB N N 28 
NCV C2  N2   SING N N 29 
NCV N2  C1   SING N N 30 
NCV N2  HN2  SING N N 31 
NCV C1  O1   DOUB N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NCV SMILES           ACDLabs              10.04 "O=C1C(=C(N(C(=O)N1)C)CC(CO)CO)C"                                                                  
NCV SMILES_CANONICAL CACTVS               3.341 "CN1C(=O)NC(=O)C(=C1CC(CO)CO)C"                                                                    
NCV SMILES           CACTVS               3.341 "CN1C(=O)NC(=O)C(=C1CC(CO)CO)C"                                                                    
NCV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=C(N(C(=O)NC1=O)C)CC(CO)CO"                                                                    
NCV SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=C(N(C(=O)NC1=O)C)CC(CO)CO"                                                                    
NCV InChI            InChI                1.03  "InChI=1S/C10H16N2O4/c1-6-8(3-7(4-13)5-14)12(2)10(16)11-9(6)15/h7,13-14H,3-5H2,1-2H3,(H,11,15,16)" 
NCV InChIKey         InChI                1.03  FMPCUJIPAJPVKR-UHFFFAOYSA-N                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NCV "SYSTEMATIC NAME" ACDLabs              10.04 "6-[3-hydroxy-2-(hydroxymethyl)propyl]-1,5-dimethylpyrimidine-2,4(1H,3H)-dione" 
NCV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "6-[3-hydroxy-2-(hydroxymethyl)propyl]-1,5-dimethyl-pyrimidine-2,4-dione"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NCV "Create component"  2008-10-29 RCSB 
NCV "Modify descriptor" 2011-06-04 RCSB 
NCV "Modify synonyms"   2020-05-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 NCV "6-[3-hydroxy-2-(hydroxymethyl)propyl]-1,5-dimethylpyrimidine-2,4(1H,3H)-dione" ? ? 
2 NCV N-methyl-DHBT                                                                   ? ? 
# 
