data_M1V
# 
_chem_comp.id                                    M1V 
_chem_comp.name                                  "mesobiliverdin IX(alpha)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H38 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-07-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        586.678 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M1V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4LMS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M1V OA  OA  O 0 1 N N N N N N -3.053 -19.724 28.150 -3.657 -0.092 2.481  OA  M1V 1  
M1V C1A C1A C 0 1 N N N N N N -2.303 -19.432 27.136 -3.473 0.830  1.706  C1A M1V 2  
M1V NA  NA  N 0 1 N N N N N N -2.433 -18.360 26.340 -2.283 1.208  1.204  NA  M1V 3  
M1V C2A C2A C 0 1 N N N N N N -1.172 -20.260 26.658 -4.476 1.678  1.177  C2A M1V 4  
M1V CMA CMA C 0 1 N N N N N N -0.663 -21.545 27.255 -5.951 1.598  1.476  CMA M1V 5  
M1V C3A C3A C 0 1 N N N N N N -0.631 -19.552 25.490 -3.877 2.575  0.356  C3A M1V 6  
M1V CAA CAA C 0 1 N N N N N N 0.552  -20.020 24.692 -4.563 3.668  -0.422 CAA M1V 7  
M1V CBA CBA C 0 1 N N N N N N 1.604  -18.917 24.673 -4.509 4.973  0.376  CBA M1V 8  
M1V C4A C4A C 0 1 N N N N N N -1.493 -18.354 25.333 -2.488 2.292  0.360  C4A M1V 9  
M1V CHA CHA C 0 1 N N N N N N -1.323 -17.334 24.290 -1.518 2.970  -0.345 CHA M1V 10 
M1V C1B C1B C 0 1 Y N N N N N -2.053 -16.087 24.080 -0.192 2.485  -0.366 C1B M1V 11 
M1V C2B C2B C 0 1 Y N N N N N -2.721 -15.221 25.065 0.939  3.215  -0.733 C2B M1V 12 
M1V CMB CMB C 0 1 N N N N N N -2.808 -15.356 26.558 0.962  4.655  -1.174 CMB M1V 13 
M1V C3B C3B C 0 1 Y N N N N N -3.253 -14.113 24.294 2.034  2.380  -0.618 C3B M1V 14 
M1V CAB CAB C 0 1 N N N N N N -4.041 -12.922 24.775 3.467  2.746  -0.911 CAB M1V 15 
M1V CBB CBB C 0 1 N N N N N N -5.410 -13.401 25.260 4.126  3.286  0.359  CBB M1V 16 
M1V CGB CGB C 0 1 N N N N N N -6.231 -13.738 24.052 5.558  3.651  0.065  CGB M1V 17 
M1V O2B O2B O 0 1 N N N N N N -6.521 -14.936 23.841 6.337  4.150  1.038  O2B M1V 18 
M1V O1B O1B O 0 1 N N N N N N -6.575 -12.799 23.300 6.006  3.495  -1.046 O1B M1V 19 
M1V NB  NB  N 0 1 Y N N N N N -2.154 -15.570 22.832 0.205  1.220  -0.024 NB  M1V 20 
M1V C4B C4B C 0 1 Y N N N N N -2.855 -14.417 22.910 1.572  1.135  -0.179 C4B M1V 21 
M1V CHB CHB C 0 1 N N N N N N -3.222 -13.550 21.814 2.359  0.006  0.067  CHB M1V 22 
M1V C1C C1C C 0 1 N N N N N N -2.982 -13.781 20.398 1.758  -1.256 0.185  C1C M1V 23 
M1V C2C C2C C 0 1 N N N N N N -3.361 -12.774 19.386 2.411  -2.455 0.571  C2C M1V 24 
M1V CAC CAC C 0 1 N N N N N N -4.019 -11.439 19.558 3.867  -2.611 0.927  CAC M1V 25 
M1V CBC CBC C 0 1 N N N N N N -5.484 -11.546 19.180 4.685  -2.817 -0.349 CBC M1V 26 
M1V CGC CGC C 0 1 N N N N N N -6.066 -10.177 19.391 6.141  -2.973 0.007  CGC M1V 27 
M1V O2C O2C O 0 1 N N N N N N -5.902 -9.329  18.482 6.489  -2.924 1.164  O2C M1V 28 
M1V O1C O1C O 0 1 N N N N N N -6.651 -9.959  20.481 7.052  -3.165 -0.960 O1C M1V 29 
M1V C3C C3C C 0 1 N N N N N N -2.975 -13.361 18.120 1.471  -3.435 0.557  C3C M1V 30 
M1V CMC CMC C 0 1 N N N N N N -3.130 -12.722 16.771 1.686  -4.889 0.890  CMC M1V 31 
M1V NC  NC  N 0 1 N N N N N N -2.391 -14.871 19.820 0.468  -1.535 -0.041 NC  M1V 32 
M1V C4C C4C C 0 1 N N N N N N -2.375 -14.654 18.488 0.251  -2.831 0.164  C4C M1V 33 
M1V CHC CHC C 0 1 N N N N N N -1.801 -15.644 17.584 -0.993 -3.496 0.019  CHC M1V 34 
M1V C1D C1D C 0 1 N N N N N N -2.401 -16.140 16.366 -2.079 -2.820 -0.490 C1D M1V 35 
M1V C2D C2D C 0 1 N N N N N N -1.827 -17.245 15.571 -3.403 -3.308 -0.573 C2D M1V 36 
M1V CMD CMD C 0 1 N N N N N N -0.559 -18.010 15.792 -3.883 -4.663 -0.121 CMD M1V 37 
M1V ND  ND  N 0 1 N N N N N N -3.543 -15.673 15.825 -2.075 -1.529 -1.010 ND  M1V 38 
M1V C4D C4D C 0 1 N N N N N N -3.849 -16.387 14.717 -3.327 -1.227 -1.403 C4D M1V 39 
M1V OD  OD  O 0 1 N N N N N N -4.873 -16.206 13.962 -3.680 -0.174 -1.905 OD  M1V 40 
M1V C3D C3D C 0 1 N N N N N N -2.785 -17.396 14.475 -4.163 -2.332 -1.134 C3D M1V 41 
M1V CAD CAD C 0 1 N N N N N N -2.707 -18.397 13.358 -5.640 -2.414 -1.420 CAD M1V 42 
M1V CBD CBD C 0 1 N N N N N N -2.006 -17.821 12.132 -6.423 -1.900 -0.211 CBD M1V 43 
M1V H1  H1  H 0 1 N N N N N N -1.281 -21.817 28.123 -6.149 0.726  2.099  H1  M1V 44 
M1V H2  H2  H 0 1 N N N N N N -0.716 -22.345 26.502 -6.264 2.500  2.003  H2  M1V 45 
M1V H3  H3  H 0 1 N N N N N N 0.381  -21.412 27.576 -6.507 1.512  0.542  H3  M1V 46 
M1V H4  H4  H 0 1 N N N N N N 0.237  -20.247 23.663 -4.057 3.806  -1.378 H4  M1V 47 
M1V H5  H5  H 0 1 N N N N N N 0.974  -20.925 25.154 -5.602 3.393  -0.598 H5  M1V 48 
M1V H6  H6  H 0 1 N N N N N N 2.475  -19.251 24.090 -5.014 4.835  1.332  H6  M1V 49 
M1V H7  H7  H 0 1 N N N N N N 1.179  -18.013 24.212 -3.469 5.248  0.552  H7  M1V 50 
M1V H8  H8  H 0 1 N N N N N N 1.917  -18.691 25.703 -5.004 5.764  -0.186 H8  M1V 51 
M1V H9  H9  H 0 1 N N N N N N -0.542 -17.536 23.572 -1.772 3.873  -0.881 H9  M1V 52 
M1V H11 H11 H 0 1 N N N N N N -1.942 -14.862 27.022 1.092  5.300  -0.305 H11 M1V 53 
M1V H12 H12 H 0 1 N N N N N N -3.735 -14.883 26.915 1.789  4.810  -1.867 H12 M1V 54 
M1V H13 H13 H 0 1 N N N N N N -2.812 -16.422 26.830 0.022  4.899  -1.669 H13 M1V 55 
M1V H14 H14 H 0 1 N N N N N N -3.505 -12.434 25.603 4.005  1.861  -1.252 H14 M1V 56 
M1V H15 H15 H 0 1 N N N N N N -4.171 -12.206 23.950 3.495  3.509  -1.689 H15 M1V 57 
M1V H16 H16 H 0 1 N N N N N N -5.902 -12.604 25.837 3.588  4.171  0.699  H16 M1V 58 
M1V H17 H17 H 0 1 N N N N N N -5.292 -14.293 25.893 4.097  2.523  1.136  H17 M1V 59 
M1V H18 H18 H 0 1 N N N N N N -7.028 -15.003 23.041 7.248  4.370  0.802  H18 M1V 60 
M1V H19 H19 H 0 1 N N N N N N -1.776 -15.972 21.998 -0.378 0.502  0.270  H19 M1V 61 
M1V H20 H20 H 0 1 N N N N N N -3.729 -12.632 22.074 3.430  0.106  0.167  H20 M1V 62 
M1V H22 H22 H 0 1 N N N N N N -3.526 -10.701 18.909 4.213  -1.714 1.441  H22 M1V 63 
M1V H23 H23 H 0 1 N N N N N N -3.933 -11.120 20.607 3.990  -3.474 1.581  H23 M1V 64 
M1V H24 H24 H 0 1 N N N N N N -5.992 -12.281 19.822 4.339  -3.714 -0.862 H24 M1V 65 
M1V H25 H25 H 0 1 N N N N N N -5.586 -11.847 18.127 4.562  -1.953 -1.003 H25 M1V 66 
M1V H26 H26 H 0 1 N N N N N N -6.947 -9.057  20.507 7.973  -3.260 -0.682 H26 M1V 67 
M1V H27 H27 H 0 1 N N N N N N -3.629 -11.748 16.881 0.745  -5.429 0.783  H27 M1V 68 
M1V H28 H28 H 0 1 N N N N N N -2.138 -12.577 16.318 2.427  -5.311 0.211  H28 M1V 69 
M1V H29 H29 H 0 1 N N N N N N -3.736 -13.373 16.124 2.042  -4.978 1.916  H29 M1V 70 
M1V H31 H31 H 0 1 N N N N N N -0.834 -16.045 17.850 -1.088 -4.532 0.307  H31 M1V 71 
M1V H33 H33 H 0 1 N N N N N N -0.069 -17.652 16.710 -3.046 -5.228 0.289  H33 M1V 72 
M1V H34 H34 H 0 1 N N N N N N -0.790 -19.081 15.893 -4.648 -4.541 0.646  H34 M1V 73 
M1V H35 H35 H 0 1 N N N N N N 0.114  -17.859 14.935 -4.304 -5.202 -0.970 H35 M1V 74 
M1V H36 H36 H 0 1 N N N N N N -3.727 -18.698 13.077 -5.876 -1.804 -2.292 H36 M1V 75 
M1V H37 H37 H 0 1 N N N N N N -2.148 -19.278 13.707 -5.915 -3.451 -1.617 H37 M1V 76 
M1V H38 H38 H 0 1 N N N N N N -1.969 -18.582 11.339 -6.187 -2.510 0.661  H38 M1V 77 
M1V H39 H39 H 0 1 N N N N N N -2.561 -16.942 11.771 -6.149 -0.864 -0.014 H39 M1V 78 
M1V H40 H40 H 0 1 N N N N N N -0.982 -17.523 12.402 -7.492 -1.960 -0.417 H40 M1V 79 
M1V H41 H41 H 0 1 N N N N N N -3.128 -17.651 26.463 -1.427 0.794  1.398  H41 M1V 80 
M1V H10 H10 H 0 1 N N N N N N -4.083 -14.913 16.188 -1.302 -0.947 -1.078 H10 M1V 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M1V CBD CAD SING N N 1  
M1V CAD C3D SING N N 2  
M1V OD  C4D DOUB N N 3  
M1V C3D C4D SING N N 4  
M1V C3D C2D DOUB N N 5  
M1V C4D ND  SING N N 6  
M1V C2D CMD SING N N 7  
M1V C2D C1D SING N N 8  
M1V ND  C1D SING N N 9  
M1V C1D CHC DOUB N Z 10 
M1V CMC C3C SING N N 11 
M1V CHC C4C SING N N 12 
M1V C3C C4C SING N N 13 
M1V C3C C2C DOUB N N 14 
M1V O2C CGC DOUB N N 15 
M1V C4C NC  DOUB N N 16 
M1V CBC CGC SING N N 17 
M1V CBC CAC SING N N 18 
M1V C2C CAC SING N N 19 
M1V C2C C1C SING N N 20 
M1V CGC O1C SING N N 21 
M1V NC  C1C SING N N 22 
M1V C1C CHB DOUB N Z 23 
M1V CHB C4B SING N N 24 
M1V NB  C4B SING Y N 25 
M1V NB  C1B SING Y N 26 
M1V C4B C3B DOUB Y N 27 
M1V O1B CGB DOUB N N 28 
M1V O2B CGB SING N N 29 
M1V CGB CBB SING N N 30 
M1V C1B CHA SING N N 31 
M1V C1B C2B DOUB Y N 32 
M1V CHA C4A DOUB N Z 33 
M1V C3B CAB SING N N 34 
M1V C3B C2B SING Y N 35 
M1V CBA CAA SING N N 36 
M1V CAA C3A SING N N 37 
M1V CAB CBB SING N N 38 
M1V C2B CMB SING N N 39 
M1V C4A C3A SING N N 40 
M1V C4A NA  SING N N 41 
M1V C3A C2A DOUB N N 42 
M1V NA  C1A SING N N 43 
M1V C2A C1A SING N N 44 
M1V C2A CMA SING N N 45 
M1V C1A OA  DOUB N N 46 
M1V CMA H1  SING N N 47 
M1V CMA H2  SING N N 48 
M1V CMA H3  SING N N 49 
M1V CAA H4  SING N N 50 
M1V CAA H5  SING N N 51 
M1V CBA H6  SING N N 52 
M1V CBA H7  SING N N 53 
M1V CBA H8  SING N N 54 
M1V CHA H9  SING N N 55 
M1V CMB H11 SING N N 56 
M1V CMB H12 SING N N 57 
M1V CMB H13 SING N N 58 
M1V CAB H14 SING N N 59 
M1V CAB H15 SING N N 60 
M1V CBB H16 SING N N 61 
M1V CBB H17 SING N N 62 
M1V O2B H18 SING N N 63 
M1V NB  H19 SING N N 64 
M1V CHB H20 SING N N 65 
M1V CAC H22 SING N N 66 
M1V CAC H23 SING N N 67 
M1V CBC H24 SING N N 68 
M1V CBC H25 SING N N 69 
M1V O1C H26 SING N N 70 
M1V CMC H27 SING N N 71 
M1V CMC H28 SING N N 72 
M1V CMC H29 SING N N 73 
M1V CHC H31 SING N N 74 
M1V CMD H33 SING N N 75 
M1V CMD H34 SING N N 76 
M1V CMD H35 SING N N 77 
M1V CAD H36 SING N N 78 
M1V CAD H37 SING N N 79 
M1V CBD H38 SING N N 80 
M1V CBD H39 SING N N 81 
M1V CBD H40 SING N N 82 
M1V NA  H41 SING N N 83 
M1V ND  H10 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M1V InChI            InChI                1.03  "InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h13-15,35H,7-12H2,1-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-,28-15-" 
M1V InChIKey         InChI                1.03  CXQHEXWJGZEPFP-BBROENKCSA-N                                                                                                                                                                                                                   
M1V SMILES_CANONICAL CACTVS               3.385 "CCC1=C(C)\C(NC1=O)=C\C2=NC(=C\c3[nH]c(\C=C4/NC(=O)C(=C4CC)C)c(C)c3CCC(O)=O)/C(=C2C)CCC(O)=O"                                                                                                                                                 
M1V SMILES           CACTVS               3.385 "CCC1=C(C)C(NC1=O)=CC2=NC(=Cc3[nH]c(C=C4NC(=O)C(=C4CC)C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O"                                                                                                                                                       
M1V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC1=C(/C(=C/C2=N/C(=C\c3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)C)CC)C)CCC(=O)O)/C(=C2C)CCC(=O)O)/NC1=O)C"                                                                                                                                          
M1V SMILES           "OpenEye OEToolkits" 1.7.6 "CCC1=C(C(=CC2=NC(=Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)C)CC)C)CCC(=O)O)C(=C2C)CCC(=O)O)NC1=O)C"                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           M1V 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   1.7.6 
_pdbx_chem_comp_identifier.identifier        "3-[5-[(Z)-(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(Z)-[5-[(Z)-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M1V "Create component" 2013-07-31 RCSB 
M1V "Initial release"  2014-06-18 RCSB 
M1V "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            M1V 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAA 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
