data_LNV
#

_chem_comp.id                                   LNV
_chem_comp.name                                 "5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H22 N4 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid;
Laninamivir
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-09-01
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       346.336
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LNV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3TI3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  LNV  "5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid"  PDB  ?  
2  LNV  Laninamivir                                                                                                      PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LNV  C2    CAA   C  0  1  N  N  N  29.446  13.207  -22.779  -0.203  -2.156  -0.147  C2    LNV   1  
LNV  C3    CAB   C  0  1  N  N  N  30.878  13.723  -22.626  -1.424  -1.718   0.124  C3    LNV   2  
LNV  C4    CAC   C  0  1  N  N  S  31.221  14.531  -21.369  -1.708  -0.275   0.440  C4    LNV   3  
LNV  C5    CAD   C  0  1  N  N  R  30.019  14.857  -20.440  -0.533   0.591  -0.026  C5    LNV   4  
LNV  C6    CAE   C  0  1  N  N  R  28.581  14.562  -20.941   0.768  -0.065   0.456  C6    LNV   5  
LNV  O6    OAF   O  0  1  N  N  N  28.367  13.762  -22.088   0.884  -1.346  -0.170  O6    LNV   6  
LNV  C1    CAG   C  0  1  N  N  N  29.045  12.568  -24.061  -0.017  -3.589  -0.431  C1    LNV   7  
LNV  O1B   OAH   O  0  1  N  N  N  30.014  11.973  -24.835   1.211  -4.068  -0.711  O1B   LNV   8  
LNV  O1A   OAI   O  0  1  N  N  N  27.852  12.496  -24.328  -0.972  -4.341  -0.414  O1A   LNV   9  
LNV  C7    CAJ   C  0  1  N  N  R  27.489  14.428  -19.942   1.962   0.809   0.065  C7    LNV  10  
LNV  C8    CAK   C  0  1  N  N  R  26.126  14.687  -20.546   3.262   0.092   0.437  C8    LNV  11  
LNV  C9    CAL   C  0  1  N  N  N  25.006  14.368  -19.585   4.450   1.018   0.168  C9    LNV  12  
LNV  O9    OAM   O  0  1  N  N  N  24.972  15.189  -18.437   5.668   0.315   0.420  O9    LNV  13  
LNV  O7    OAW   O  0  1  N  N  N  27.619  13.167  -19.416   1.936   1.049  -1.343  O7    LNV  14  
LNV  C13   CAX   C  0  1  N  N  N  27.665  13.010  -18.039   2.238   2.397  -1.709  C13   LNV  15  
LNV  O8    OAY   O  0  1  N  N  N  26.021  15.941  -21.113   3.234  -0.258   1.822  O8    LNV  16  
LNV  N4    NAZ   N  0  1  N  N  N  32.543  14.365  -20.813  -2.929   0.146  -0.253  N4    LNV  17  
LNV  C12   CBA   C  0  1  N  N  N  33.307  15.399  -20.170  -4.157  -0.085   0.319  C12   LNV  18  
LNV  N12   NBB   N  0  1  N  N  N  34.402  15.035  -19.540  -4.236  -0.677   1.477  N12   LNV  19  
LNV  N13   NBC   N  0  1  N  N  N  32.974  16.684  -20.271  -5.303   0.310  -0.331  N13   LNV  20  
LNV  C10   CBD   C  0  1  N  N  N  30.832  15.429  -18.086  -1.408   2.865  -0.067  C10   LNV  21  
LNV  C11   CBE   C  0  1  N  N  N  30.968  16.584  -17.148  -1.529   4.246   0.523  C11   LNV  22  
LNV  O10   OBF   O  0  1  N  N  N  31.060  14.278  -17.725  -1.992   2.591  -1.094  O10   LNV  23  
LNV  N5    NBG   N  0  1  N  N  N  30.153  15.730  -19.308  -0.650   1.934   0.547  N5    LNV  24  
LNV  H3    HAB   H  0  1  N  N  N  31.625  13.524  -23.381  -2.243  -2.421   0.117  H3    LNV  25  
LNV  H4    HAC   H  0  1  N  N  N  31.412  15.544  -21.752  -1.842  -0.157   1.515  H4    LNV  26  
LNV  H5    HAD   H  0  1  N  N  N  30.280  13.956  -19.866  -0.531   0.654  -1.115  H5    LNV  27  
LNV  H6    HAE   H  0  1  N  N  N  28.491  15.581  -21.345   0.739  -0.186   1.538  H6    LNV  28  
LNV  H7    HAJ   H  0  1  N  N  N  27.571  15.186  -19.149   1.906   1.758   0.597  H7    LNV  29  
LNV  H8    HAK   H  0  1  N  N  N  26.015  13.982  -21.383   3.363  -0.812  -0.164  H8    LNV  30  
LNV  H91   HAL   H  0  1  N  N  N  24.054  14.498  -20.121   4.427   1.346  -0.871  H91   LNV  31  
LNV  H92   HALA  H  0  1  N  N  N  25.133  13.327  -19.252   4.389   1.886   0.825  H92   LNV  32  
LNV  HO9   HOAM  H  0  1  N  N  N  24.245  14.930  -17.883   6.465   0.843   0.270  HO9   LNV  33  
LNV  H131  HAX   H  0  0  N  N  N  27.770  11.943  -17.794   3.272   2.621  -1.447  H131  LNV  34  
LNV  H132  HAXA  H  0  0  N  N  N  28.525  13.565  -17.635   2.100   2.522  -2.783  H132  LNV  35  
LNV  H133  HAXB  H  0  0  N  N  N  26.736  13.398  -17.595   1.573   3.076  -1.175  H133  LNV  36  
LNV  HO8   HOAY  H  0  1  N  N  N  25.150  16.053  -21.476   3.145   0.499   2.417  HO8   LNV  37  
LNV  HN4   HNAZ  H  0  1  N  N  N  32.960  13.459  -20.881  -2.870   0.586  -1.115  HN4   LNV  38  
LNV  HN12  HNBB  H  0  0  N  N  N  34.904  15.820  -19.178  -5.103  -0.840   1.881  HN12  LNV  39  
LNV  HN14  HNBC  H  0  0  N  N  N  33.560  17.386  -19.865  -5.244   0.751  -1.193  HN14  LNV  40  
LNV  HN13  HNBA  H  0  0  N  N  N  32.138  16.948  -20.753  -6.170   0.147   0.073  HN13  LNV  41  
LNV  H111  HBE   H  0  0  N  N  N  31.285  16.219  -16.160  -2.177   4.855  -0.108  H111  LNV  42  
LNV  H112  HBEA  H  0  0  N  N  N  31.719  17.286  -17.538  -1.955   4.178   1.523  H112  LNV  43  
LNV  H113  HBEB  H  0  0  N  N  N  29.999  17.097  -17.055  -0.542   4.705   0.579  H113  LNV  44  
LNV  HN5   HNBG  H  0  1  N  N  N  29.732  16.634  -19.381  -0.183   2.154   1.368  HN5   LNV  45  
LNV  HOB1  HOAH  H  0  0  N  N  N  29.605  11.526  -25.567   1.283  -5.015  -0.890  HOB1  LNV  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LNV  C2   C3    DOUB  N  N   1  
LNV  C2   O6    SING  N  N   2  
LNV  C2   C1    SING  N  N   3  
LNV  C3   C4    SING  N  N   4  
LNV  C4   C5    SING  N  N   5  
LNV  C4   N4    SING  N  N   6  
LNV  C5   C6    SING  N  N   7  
LNV  C5   N5    SING  N  N   8  
LNV  C6   O6    SING  N  N   9  
LNV  C6   C7    SING  N  N  10  
LNV  C1   O1B   SING  N  N  11  
LNV  C1   O1A   DOUB  N  N  12  
LNV  C7   C8    SING  N  N  13  
LNV  C7   O7    SING  N  N  14  
LNV  C8   C9    SING  N  N  15  
LNV  C8   O8    SING  N  N  16  
LNV  C9   O9    SING  N  N  17  
LNV  O7   C13   SING  N  N  18  
LNV  N4   C12   SING  N  N  19  
LNV  C12  N12   DOUB  N  N  20  
LNV  C12  N13   SING  N  N  21  
LNV  C10  C11   SING  N  N  22  
LNV  C10  O10   DOUB  N  N  23  
LNV  C10  N5    SING  N  N  24  
LNV  C3   H3    SING  N  N  25  
LNV  C4   H4    SING  N  N  26  
LNV  C5   H5    SING  N  N  27  
LNV  C6   H6    SING  N  N  28  
LNV  C7   H7    SING  N  N  29  
LNV  C8   H8    SING  N  N  30  
LNV  C9   H91   SING  N  N  31  
LNV  C9   H92   SING  N  N  32  
LNV  O9   HO9   SING  N  N  33  
LNV  C13  H131  SING  N  N  34  
LNV  C13  H132  SING  N  N  35  
LNV  C13  H133  SING  N  N  36  
LNV  O8   HO8   SING  N  N  37  
LNV  N4   HN4   SING  N  N  38  
LNV  N12  HN12  SING  N  N  39  
LNV  N13  HN14  SING  N  N  40  
LNV  N13  HN13  SING  N  N  41  
LNV  C11  H111  SING  N  N  42  
LNV  C11  H112  SING  N  N  43  
LNV  C11  H113  SING  N  N  44  
LNV  N5   HN5   SING  N  N  45  
LNV  O1B  HOB1  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LNV  SMILES            ACDLabs               12.01  "O=C(O)C=1OC(C(OC)C(O)CO)C(NC(=O)C)C(C=1)NC(=[N@H])N"  
LNV  InChI             InChI                 1.03   "InChI=1S/C13H22N4O7/c1-5(19)16-9-6(17-13(14)15)3-8(12(21)22)24-11(9)10(23-2)7(20)4-18/h3,6-7,9-11,18,20H,4H2,1-2H3,(H,16,19)(H,21,22)(H4,14,15,17)/t6-,7+,9+,10+,11+/m0/s1"  
LNV  InChIKey          InChI                 1.03   QNRRHYPPQFELSF-CNYIRLTGSA-N  
LNV  SMILES_CANONICAL  CACTVS                3.370  "CO[C@H]([C@H](O)CO)[C@@H]1OC(=C[C@H](NC(N)=N)[C@H]1NC(C)=O)C(O)=O"  
LNV  SMILES            CACTVS                3.370  "CO[CH]([CH](O)CO)[CH]1OC(=C[CH](NC(N)=N)[CH]1NC(C)=O)C(O)=O"  
LNV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "[H]/N=C(\N)/N[C@H]1C=C(O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](CO)O)OC)C(=O)O"  
LNV  SMILES            "OpenEye OEToolkits"  1.7.2  "CC(=O)NC1C(C=C(OC1C(C(CO)O)OC)C(=O)O)NC(=N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LNV  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid"  
LNV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  
;(2R,3R,4S)-3-acetamido-4-carbamimidamido-2-[(1R,2R)-1-methoxy-2,3-bis(oxidanyl)propyl]-3,4-dihydro-2H-pyran-6-carboxyli
c acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
LNV  "CARBOHYDRATE ISOMER"                  D             PDB  ?  
LNV  "CARBOHYDRATE RING"                    dihydropyran  PDB  ?  
LNV  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose        PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LNV  "Create component"          2011-09-01  PDBJ  
LNV  "Other modification"        2020-07-03  RCSB  
LNV  "Modify name"               2020-07-17  RCSB  
LNV  "Modify synonyms"           2020-07-17  RCSB  
LNV  "Modify internal type"      2020-07-17  RCSB  
LNV  "Modify linking type"       2020-07-17  RCSB  
LNV  "Modify atom id"            2020-07-17  RCSB  
LNV  "Modify component atom id"  2020-07-17  RCSB  
##
