data_JRV
#

_chem_comp.id                                   JRV
_chem_comp.name                                 "methyl 6-S-beta-D-glucopyranosyl-6-thio-beta-D-glucopyranoside"
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H24 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "METHYL 6-THIO-BETA-GENTIOBIOSIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-09-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       372.389
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JRV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MI1
_chem_comp.pdbx_subcomponent_list               "U1Y BGC"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
JRV  S1   S1   S  0  1  N  N  N  26.293  28.119  36.605   0.410   0.784   0.481  S6    U1Y   1  1  polymer  1  
JRV  C11  C7   C  0  1  N  N  R  25.909  31.477  33.601  -3.947   1.078   0.191  C1    U1Y   2  1  polymer  1  
JRV  O1   O6   O  0  1  N  N  N  24.688  31.256  32.968  -4.392   2.331  -0.331  O1    U1Y   3  1  polymer  1  
JRV  C7   C8   C  0  1  N  N  N  24.477  32.433  32.162  -3.678   3.460   0.177  C7    U1Y   4  1  polymer  1  
JRV  O51  O7   O  0  1  N  N  N  25.601  30.553  34.598  -2.605   0.833  -0.237  O5    U1Y   5  1  polymer  1  
JRV  C51  C9   C  0  1  N  N  S  26.501  30.393  35.636  -2.050  -0.389   0.253  C5    U1Y   6  1  polymer  1  
JRV  C41  C10  C  0  1  N  N  S  27.134  31.719  36.102  -2.884  -1.567  -0.257  C4    U1Y   7  1  polymer  1  
JRV  O41  O8   O  0  1  N  N  N  28.497  31.613  36.604  -2.366  -2.786   0.278  O4    U1Y   8  1  polymer  1  
JRV  C31  C11  C  0  1  N  N  S  27.407  32.690  35.015  -4.337  -1.387   0.193  C3    U1Y   9  1  polymer  1  
JRV  O31  O9   O  0  1  N  N  N  27.868  33.847  35.688  -5.137  -2.444  -0.341  O3    U1Y  10  1  polymer  1  
JRV  C21  C12  C  0  1  N  N  R  26.160  32.848  34.231  -4.857  -0.041  -0.322  C2    U1Y  11  1  polymer  1  
JRV  O21  O10  O  0  1  N  N  N  26.441  33.849  33.292  -6.188   0.170   0.153  O2    U1Y  12  1  polymer  1  
JRV  C61  C13  C  0  1  N  N  N  25.517  29.684  36.579  -0.610  -0.530  -0.242  C6    U1Y  13  1  polymer  1  
JRV  C2   C3   C  0  1  N  N  R  24.934  25.730  36.967   3.019   1.564   0.209  C2    BGC  14  2  polymer  1  
JRV  C3   C6   C  0  1  N  N  S  24.262  24.574  36.187   4.417   1.247  -0.330  C3    BGC  15  2  polymer  1  
JRV  C4   C4   C  0  1  N  N  S  23.739  25.033  34.808   4.852  -0.127   0.186  C4    BGC  16  2  polymer  1  
JRV  C5   C1   C  0  1  N  N  R  24.929  25.597  34.031   3.816  -1.173  -0.235  C5    BGC  17  2  polymer  1  
JRV  C6   C2   C  0  1  N  N  N  24.644  26.006  32.591   4.212  -2.539   0.328  C6    BGC  18  2  polymer  1  
JRV  C1   C5   C  0  1  N  N  S  25.889  26.486  36.012   2.053   0.454  -0.213  C1    BGC  19  2  polymer  1  
JRV  O2   O5   O  0  1  N  N  N  25.665  25.304  38.160   2.573   2.813  -0.325  O2    BGC  20  2  polymer  1  
JRV  O3   O4   O  0  1  N  N  N  23.223  23.951  36.962   5.340   2.241   0.121  O3    BGC  21  2  polymer  1  
JRV  O4   O3   O  0  1  N  N  N  23.120  23.984  34.041   6.124  -0.466  -0.369  O4    BGC  22  2  polymer  1  
JRV  O5   O2   O  0  1  N  N  N  25.347  26.766  34.716   2.532  -0.802   0.273  O5    BGC  23  2  polymer  1  
JRV  O6   O1   O  0  1  N  N  N  23.770  27.132  32.595   3.310  -3.535  -0.159  O6    BGC  24  2  polymer  1  
JRV  H12  H12  H  0  1  N  N  N  26.768  31.170  32.987  -3.982   1.104   1.280  H1    U1Y  25  1  polymer  1  
JRV  H13  H13  H  0  1  N  N  N  23.524  32.342  31.621  -4.076   4.372  -0.267  H71   U1Y  26  1  polymer  1  
JRV  H14  H14  H  0  1  N  N  N  24.447  33.321  32.811  -3.792   3.504   1.260  H72   U1Y  27  1  polymer  1  
JRV  H15  H15  H  0  1  N  N  N  25.300  32.535  31.439  -2.622   3.364  -0.073  H73   U1Y  28  1  polymer  1  
JRV  H16  H16  H  0  1  N  N  N  27.303  29.692  35.362  -2.061  -0.382   1.343  H5    U1Y  29  1  polymer  1  
JRV  H17  H17  H  0  1  N  N  N  26.484  32.180  36.860  -2.840  -1.600  -1.346  H4    U1Y  30  1  polymer  1  
JRV  H18  H18  H  0  1  N  N  N  28.519  31.007  37.335  -2.847  -3.576  -0.004  HO4   U1Y  31  1  polymer  1  
JRV  H19  H19  H  0  1  N  N  N  28.197  32.290  34.362  -4.387  -1.407   1.281  H3    U1Y  32  1  polymer  1  
JRV  H20  H20  H  0  1  N  N  N  28.668  33.643  36.158  -6.071  -2.393  -0.096  HO3   U1Y  33  1  polymer  1  
JRV  H21  H21  H  0  1  N  N  N  25.320  33.122  34.886  -4.853  -0.043  -1.412  H2    U1Y  34  1  polymer  1  
JRV  H22  H22  H  0  1  N  N  N  26.587  34.673  33.741  -6.578   1.007  -0.132  HO2   U1Y  35  1  polymer  1  
JRV  H23  H23  H  0  1  N  N  N  25.485  30.150  37.575  -0.590  -0.449  -1.329  H61   U1Y  36  1  polymer  1  
JRV  H24  H24  H  0  1  N  N  N  24.500  29.638  36.162  -0.216  -1.502   0.057  H62   U1Y  37  1  polymer  1  
JRV  H5   H5   H  0  1  N  N  N  24.143  26.431  37.270   3.052   1.625   1.297  H2    BGC  38  2  polymer  1  
JRV  H9   H9   H  0  1  N  N  N  25.043  23.823  35.997   4.395   1.238  -1.420  H3    BGC  39  2  polymer  1  
JRV  H6   H6   H  0  1  N  N  N  23.015  25.846  34.970   4.922  -0.102   1.273  H4    BGC  40  2  polymer  1  
JRV  H1   H1   H  0  1  N  N  N  25.735  24.849  34.032   3.774  -1.226  -1.323  H5    BGC  41  2  polymer  1  
JRV  H2   H2   H  0  1  N  N  N  24.167  25.171  32.057   5.226  -2.782   0.012  H6C1  BGC  42  2  polymer  1  
JRV  H3   H3   H  0  1  N  N  N  25.586  26.272  32.089   4.167  -2.510   1.417  H6C2  BGC  43  2  polymer  1  
JRV  H7   H7   H  0  1  N  N  N  26.837  25.934  35.932   1.989   0.422  -1.301  H1    BGC  44  2  polymer  1  
JRV  H11  H11  H  0  1  N  N  N  25.076  24.840  38.744   1.691   3.075  -0.027  HB    BGC  45  2  polymer  1  
JRV  H10  H10  H  0  1  N  N  N  23.573  23.680  37.802   5.125   3.138  -0.170  HC    BGC  46  2  polymer  1  
JRV  H8   H8   H  0  1  N  N  N  22.380  23.633  34.523   6.830   0.156  -0.142  HD    BGC  47  2  polymer  1  
JRV  H4   H4   H  0  1  N  N  N  23.587  27.394  31.701   3.501  -4.428   0.158  H6    BGC  48  2  polymer  1  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JRV  C7   O1   SING  N  N   1  
JRV  C6   O6   SING  N  N   2  
JRV  C6   C5   SING  N  N   3  
JRV  O1   C11  SING  N  N   4  
JRV  O21  C21  SING  N  N   5  
JRV  C11  C21  SING  N  N   6  
JRV  C11  O51  SING  N  N   7  
JRV  C5   O5   SING  N  N   8  
JRV  C5   C4   SING  N  N   9  
JRV  O4   C4   SING  N  N  10  
JRV  C21  C31  SING  N  N  11  
JRV  O51  C51  SING  N  N  12  
JRV  O5   C1   SING  N  N  13  
JRV  C4   C3   SING  N  N  14  
JRV  C31  O31  SING  N  N  15  
JRV  C31  C41  SING  N  N  16  
JRV  C51  C41  SING  N  N  17  
JRV  C51  C61  SING  N  N  18  
JRV  C1   S1   SING  N  N  19  
JRV  C1   C2   SING  N  N  20  
JRV  C41  O41  SING  N  N  21  
JRV  C3   O3   SING  N  N  22  
JRV  C3   C2   SING  N  N  23  
JRV  C61  S1   SING  N  N  24  
JRV  C2   O2   SING  N  N  25  
JRV  C5   H1   SING  N  N  26  
JRV  C6   H2   SING  N  N  27  
JRV  C6   H3   SING  N  N  28  
JRV  O6   H4   SING  N  N  29  
JRV  C2   H5   SING  N  N  30  
JRV  C4   H6   SING  N  N  31  
JRV  C1   H7   SING  N  N  32  
JRV  O4   H8   SING  N  N  33  
JRV  C3   H9   SING  N  N  34  
JRV  O3   H10  SING  N  N  35  
JRV  O2   H11  SING  N  N  36  
JRV  C11  H12  SING  N  N  37  
JRV  C7   H13  SING  N  N  38  
JRV  C7   H14  SING  N  N  39  
JRV  C7   H15  SING  N  N  40  
JRV  C51  H16  SING  N  N  41  
JRV  C41  H17  SING  N  N  42  
JRV  O41  H18  SING  N  N  43  
JRV  C31  H19  SING  N  N  44  
JRV  O31  H20  SING  N  N  45  
JRV  C21  H21  SING  N  N  46  
JRV  O21  H22  SING  N  N  47  
JRV  C61  H23  SING  N  N  48  
JRV  C61  H24  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JRV  SMILES            ACDLabs               12.01  "C1(OC(C(O)C(C1O)O)SCC2OC(C(C(C2O)O)O)OC)CO"  
JRV  InChI             InChI                 1.03   "InChI=1S/C13H24O10S/c1-21-12-10(19)8(17)7(16)5(22-12)3-24-13-11(20)9(18)6(15)4(2-14)23-13/h4-20H,2-3H2,1H3/t4-,5-,6-,7-,8+,9+,10-,11-,12-,13+/m1/s1"  
JRV  InChIKey          InChI                 1.03   WUUCBSYQRSZRQS-VHGSIDFWSA-N  
JRV  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1O[C@H](CS[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@H]1O"  
JRV  SMILES            CACTVS                3.385  "CO[CH]1O[CH](CS[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
JRV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CS[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O)O"  
JRV  SMILES            "OpenEye OEToolkits"  2.0.6  "COC1C(C(C(C(O1)CSC2C(C(C(C(O2)CO)O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JRV  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 6-S-beta-D-glucopyranosyl-6-thio-beta-D-glucopyranoside"  
JRV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[[(2~{S},3~{S},4~{S},5~{R},6~{R})-6-methoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methylsulfanyl]oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JRV  "Create component"    2018-09-19  RCSB  
JRV  "Initial release"     2019-05-29  RCSB  
JRV  "Other modification"  2020-07-03  RCSB  
JRV  "Obsolete component"  2020-07-17  RCSB  
##
