data_HVV
# 
_chem_comp.id                                    HVV 
_chem_comp.name                                  "(4S,5R)-4,5-dihydroxy-5-[(3E,6E)-octa-3,6-dien-1-yl]pyrrolidin-2-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "cerulenin, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-07-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        225.284 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HVV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6E6T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HVV CAP C1  C 0 1 N N N N N N 2.457  22.076 4.576 6.934  1.132  0.581  CAP HVV 1  
HVV CAO C2  C 0 1 N N N N N N 3.269  23.097 5.334 6.074  -0.016 0.120  CAO HVV 2  
HVV CAN C3  C 0 1 N N N N N N 4.091  22.614 6.499 4.855  0.208  -0.305 CAN HVV 3  
HVV CAM C4  C 0 1 N N N N N N 4.843  23.584 7.281 3.995  -0.940 -0.766 CAM HVV 4  
HVV CAL C5  C 0 1 N N N N N N 6.297  23.375 6.814 2.698  -0.937 0.003  CAL HVV 5  
HVV CAK C6  C 0 1 N N N N N N 7.287  24.106 7.571 1.556  -0.916 -0.639 CAK HVV 6  
HVV CAJ C7  C 0 1 N N N N N N 8.734  24.053 7.238 0.260  -0.912 0.130  CAJ HVV 7  
HVV CAI C8  C 0 1 N N N N N N 9.023  25.498 6.977 -0.587 0.285  -0.305 CAI HVV 8  
HVV CAH C9  C 0 1 N N R N N N 10.503 25.618 6.545 -1.903 0.289  0.476  CAH HVV 9  
HVV OAC O1  O 0 1 N N N N N N 10.792 24.799 5.431 -1.646 0.394  1.877  OAC HVV 10 
HVV NAD N1  N 0 1 N N N N N N 11.511 25.175 7.606 -2.666 -0.932 0.190  NAD HVV 11 
HVV CAE C10 C 0 1 N N N N N N 11.920 26.220 8.276 -3.967 -0.659 -0.014 CAE HVV 12 
HVV OAB O2  O 0 1 N N N N N N 12.766 26.167 9.211 -4.820 -1.485 -0.261 OAB HVV 13 
HVV CAF C11 C 0 1 N N N N N N 11.274 27.395 7.786 -4.211 0.829  0.109  CAF HVV 14 
HVV CAG C12 C 0 1 N N S N N N 10.914 27.045 6.282 -2.800 1.455  0.006  CAG HVV 15 
HVV OAA O3  O 0 1 N N N N N N 9.876  27.884 5.817 -2.500 1.820  -1.343 OAA HVV 16 
HVV H1  H1  H 0 1 N N N N N N 1.913  22.573 3.759 7.907  0.754  0.895  H1  HVV 17 
HVV H2  H2  H 0 1 N N N N N N 3.128  21.311 4.158 7.067  1.838  -0.239 H2  HVV 18 
HVV H3  H3  H 0 1 N N N N N N 1.738  21.600 5.259 6.451  1.635  1.419  H3  HVV 19 
HVV H4  H4  H 0 1 N N N N N N 3.261  24.139 5.050 6.462  -1.024 0.140  H4  HVV 20 
HVV H5  H5  H 0 1 N N N N N N 4.122  21.564 6.751 4.467  1.215  -0.325 H5  HVV 21 
HVV H6  H6  H 0 1 N N N N N N 4.505  24.609 7.067 3.786  -0.834 -1.830 H6  HVV 22 
HVV H7  H7  H 0 1 N N N N N N 4.743  23.383 8.358 4.518  -1.880 -0.591 H7  HVV 23 
HVV H8  H8  H 0 1 N N N N N N 6.556  22.732 5.986 2.711  -0.952 1.083  H8  HVV 24 
HVV H10 H10 H 0 1 N N N N N N 6.965  24.711 8.406 1.544  -0.900 -1.718 H10 HVV 25 
HVV H12 H12 H 0 1 N N N N N N 8.920  23.437 6.346 -0.284 -1.835 -0.071 H12 HVV 26 
HVV H13 H13 H 0 1 N N N N N N 9.328  23.668 8.080 0.471  -0.840 1.197  H13 HVV 27 
HVV H14 H14 H 0 1 N N N N N N 8.852  26.084 7.892 -0.043 1.208  -0.104 H14 HVV 28 
HVV H15 H15 H 0 1 N N N N N N 8.369  25.871 6.175 -0.798 0.213  -1.372 H15 HVV 29 
HVV H16 H16 H 0 1 N N N N N N 10.526 23.906 5.616 -1.103 -0.323 2.233  H16 HVV 30 
HVV H17 H17 H 0 1 N N N N N N 11.810 24.234 7.763 -2.282 -1.822 0.154  H17 HVV 31 
HVV H18 H18 H 0 1 N N N N N N 11.951 28.261 7.833 -4.845 1.181  -0.705 H18 HVV 32 
HVV H19 H19 H 0 1 N N N N N N 10.364 27.609 8.365 -4.664 1.063  1.072  H19 HVV 33 
HVV H20 H20 H 0 1 N N N N N N 11.816 27.093 5.654 -2.705 2.313  0.671  H20 HVV 34 
HVV H21 H21 H 0 1 N N N N N N 10.215 28.760 5.677 -3.038 2.548  -1.683 H21 HVV 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HVV CAP CAO SING N N 1  
HVV CAO CAN DOUB N E 2  
HVV OAC CAH SING N N 3  
HVV OAA CAG SING N N 4  
HVV CAG CAH SING N N 5  
HVV CAG CAF SING N N 6  
HVV CAN CAM SING N N 7  
HVV CAH CAI SING N N 8  
HVV CAH NAD SING N N 9  
HVV CAL CAM SING N N 10 
HVV CAL CAK DOUB N E 11 
HVV CAI CAJ SING N N 12 
HVV CAJ CAK SING N N 13 
HVV NAD CAE SING N N 14 
HVV CAF CAE SING N N 15 
HVV CAE OAB DOUB N N 16 
HVV CAP H1  SING N N 17 
HVV CAP H2  SING N N 18 
HVV CAP H3  SING N N 19 
HVV CAO H4  SING N N 20 
HVV CAN H5  SING N N 21 
HVV CAM H6  SING N N 22 
HVV CAM H7  SING N N 23 
HVV CAL H8  SING N N 24 
HVV CAK H10 SING N N 25 
HVV CAJ H12 SING N N 26 
HVV CAJ H13 SING N N 27 
HVV CAI H14 SING N N 28 
HVV CAI H15 SING N N 29 
HVV OAC H16 SING N N 30 
HVV NAD H17 SING N N 31 
HVV CAF H18 SING N N 32 
HVV CAF H19 SING N N 33 
HVV CAG H20 SING N N 34 
HVV OAA H21 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HVV SMILES           ACDLabs              12.01 "C\C=C\CC=[C@H]CCC1(NC(=O)CC1O)O"                                                                                                  
HVV InChI            InChI                1.03  "InChI=1S/C12H19NO3/c1-2-3-4-5-6-7-8-12(16)10(14)9-11(15)13-12/h2-3,5-6,10,14,16H,4,7-9H2,1H3,(H,13,15)/b3-2+,6-5+/t10-,12+/m0/s1" 
HVV InChIKey         InChI                1.03  VIMHNMLESUAQPL-JFDNTZKISA-N                                                                                                        
HVV SMILES_CANONICAL CACTVS               3.385 "C\C=C\C\C=C\CC[C@]1(O)NC(=O)C[C@@H]1O"                                                                                            
HVV SMILES           CACTVS               3.385 "CC=CCC=CCC[C]1(O)NC(=O)C[CH]1O"                                                                                                   
HVV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C/C=C/C/C=C/CC[C@]1([C@H](CC(=O)N1)O)O"                                                                                           
HVV SMILES           "OpenEye OEToolkits" 2.0.6 "CC=CCC=CCCC1(C(CC(=O)N1)O)O"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HVV "SYSTEMATIC NAME" ACDLabs              12.01 "(4S,5R)-4,5-dihydroxy-5-[(3E,6E)-octa-3,6-dien-1-yl]pyrrolidin-2-one"              
HVV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(4~{S},5~{R})-5-[(3~{E},6~{E})-octa-3,6-dienyl]-4,5-bis(oxidanyl)pyrrolidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HVV "Create component" 2018-07-26 RCSB 
HVV "Modify synonyms"  2018-07-26 RCSB 
HVV "Initial release"  2019-07-31 RCSB 
HVV "Modify synonyms"  2021-03-13 RCSB 
HVV "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      HVV 
_pdbx_chem_comp_synonyms.name         "cerulenin, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            HVV 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAF 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
